Is all of the endoplasmic reticulum created equal? The effects of the heterogeneous distribution of endoplasmic reticulum Ca2+-handling proteins

The endoplasmic reticulum is a heterogeneous compartment with respect to the distribution of its Ca2+-handling proteins, namely the Ca2+-binding proteins, the Ca2+ pumps and the Ca2+ release channels. The nonuniform distribution of these proteins may explain the functional heterogeneity of the endoplasmic reticulum, such as the generation of spatially complex Ca2+ signals, Ca2+ homeostasis, and protein folding and quality control

Use of measurement theory for operationalization and quantification of psychological constructs in systems dynamics modelling

The analytical tools available to social scientists have traditionally been adapted from tools originally designed for analysis of natural science phenomena. This article discusses the applicability of systems dynamics - a qualitative based modelling approach, as a possible analysis and simulation tool that bridges the gap between social and natural sciences. After a brief overview of the systems dynamics modelling methodology, the advantages as well as limiting factors of systems dynamics to the potential applications in the field of social sciences and human interactions are discussed. The issues arise with regards to operationalization and quantification of latent constructs at the simulation building stage of the systems dynamics methodology and measurement theory is proposed as a ready and waiting solution to the problem of dynamic model calibration, with a view of improving simulation model reliability and validity and encouraging the development of standardised, modular system dynamics models that can be used in social science research

Sounds from airguns and fin whales recorded in the mid-Atlantic Ocean, 1999-2009

Between 1999 and 2009, autonomous hydrophones were deployed to monitor seismic activity from 16° N to 50° N along the Mid-Atlantic Ridge. These data were examined for airgun sounds produced during offshore surveys for oil and gas deposits, as well as the 20 Hz pulse sounds from fin whales, which may be masked by airgun noise. An automatic detection algorithm was used to identify airgun sound patterns, and fin whale calling levels were summarized via long-term spectral analysis. Both airgun and fin whale sounds were recorded at all sites. Fin whale calling rates were higher at sites north of 32° N, increased during the late summer and fall months at all sites, and peaked during the winter months, a time when airgun noise was often prevalent. Seismic survey vessels were acoustically located off the coasts of three major areas: Newfoundland, northeast Brazil, and Senegal and Mauritania in West Africa. In some cases, airgun sounds were recorded almost 4000 km from the survey vessel in areas that are likely occupied by fin whales, and at some locations airgun sounds were recorded more than 80% days/month for more than 12 consecutive months

Mineral maturity and crystallinity index are distinct characteristics of bone mineral

The purpose of this study was to test the hypothesis that mineral maturity and crystallinity index are two different characteristics of bone mineral. To this end, Fourier transform infrared microspectroscopy (FTIRM) was used. To test our hypothesis, synthetic apatites and human bone samples were used for the validation of the two parameters using FTIRM. Iliac crest samples from seven human controls and two with skeletal fluorosis were analyzed at the bone structural unit (BSU) level by FTIRM on sections 2–4 lm thick. Mineral maturity and crystallinity index were highly correlated in synthetic apatites but poorly correlated in normal human bone. In skeletal fluorosis, crystallinity index was increased and maturity decreased, supporting the fact of separate measurement of these two parameters. Moreover, results obtained in fluorosis suggested that mineral characteristics can be modified independently of bone remodeling. In conclusion, mineral maturity and crystallinity index are two different parameters measured separately by FTIRM and offering new perspectives to assess bone mineral traits in osteoporosis

Eruptive modes and hiatus of volcanism at West Mata seamount, NE Lau basin : 1996–2012

Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 15 (2014): 4093–4115, doi:10.1002/2014GC005387.We present multiple lines of evidence for years to decade-long changes in the location and character of volcanic activity at West Mata seamount in the NE Lau basin over a 16 year period, and a hiatus in summit eruptions from early 2011 to at least September 2012. Boninite lava and pyroclasts were observed erupting from its summit in 2009, and hydroacoustic data from a succession of hydrophones moored nearby show near-continuous eruptive activity from January 2009 to early 2011. Successive differencing of seven multibeam bathymetric surveys of the volcano made in the 1996–2012 period reveals a pattern of extended constructional volcanism on the summit and northwest flank punctuated by eruptions along the volcano's WSW rift zone (WSWRZ). Away from the summit, the volumetrically largest eruption during the observational period occurred between May 2010 and November 2011 at ∼2920 m depth near the base of the WSWRZ. The (nearly) equally long ENE rift zone did not experience any volcanic activity during the 1996–2012 period. The cessation of summit volcanism recorded on the moored hydrophone was accompanied or followed by the formation of a small summit crater and a landslide on the eastern flank. Water column sensors, analysis of gas samples in the overlying hydrothermal plume and dives with a remotely operated vehicle in September 2012 confirmed that the summit eruption had ceased. Based on the historical eruption rates calculated using the bathymetric differencing technique, the volcano could be as young as several thousand years.Support for R.W.E. during this study was by internal NOAA funding to the NOAA Vents Program (now Earth-Ocean Interactions Program). The NSF Ridge 2000 and MARGINS programs played a major role in the planning and justification for the 2009 rapid response proposal that funded the May 2009 expedition. MBARI provided support and outstanding postprocessing of the multibeam bathymetry from the D. Allan B. AUV multibeam sonar used in this study. NSF also provided major funding for the 2009 expedition (OCE930025 and OCE-0934660 to JAR) and for the 210Po-210Pb radiometric dating (OCE-0929881 and for the 210Po-210Pb radiometric dating (OCE-0929881 to KHR)). The NOAA Office of Exploration and Research provided major funding for the 2009 and 2012 field programs.2015-04-3

The 1874-1876 volcano-tectonic episode at Askja, North Iceland: Lateral flow revisited

The Askja volcanic system, North Iceland, experienced a volcano-tectonic episode between 1874 and 1876, the climax of which was a rhyolitic, phreatoplinian to Plinian eruption at Askja central volcano on 28–29 March 1875. Fissure eruptions also occurred in 1875, producing the Nýjahraun lava, 45–65 km north of Askja. The Nýjahraun basalt is indistinguishable, in terms of whole-rock major elements, from the small-volume basaltic eruptions that took place at Askja in the early 20th century. It has been suggested that all of these basalts originated from a shallow magma chamber beneath Askja, with the Nýjahraun eruptions being fed by northward-propagating lateral dykes. It has also been conjectured that the Holuhraun lava, located at the southern tip of the Askja volcanic system 15–25 km south of Askja, was connected with the 1874–1876 Askja volcano-tectonic episode. We re-examine these interpretations in light of new whole-rock, glass and melt inclusion analyses from samples collected along the length of the Askja volcanic system. Glasses from Nýjahraun and the Askja 20th century eruptions are geochemically distinct. We suggest that the Askja 20th century basalts mixed with evolved melts in the crust, while the Nýjahraun magma evolved without such interactions. The Holuhraun basalt is more similar to lavas erupted on the Bárðarbunga-Veiðivötn volcanic system than to postglacial basalts from Askja, indicating that particular geochemical signatures are not necessarily confined to the tectonic or structural surface expression of single volcanic systems. This has important implications for the identification and delineation of individual volcanic systems beneath the northwest sector of Vatnajökull.Access to the Edinburgh Ion Microprobe Facility was funded by NERC grant IMF386/1109. MEH was supported by NERC studentship NE/F008929/1.This is the published version of an article originally published in Geochemistry, Geophysics, Geosystems and is also available at http://onlinelibrary.wiley.com/doi/10.1002/ggge.20151/abstract. Copyright 2013 American Geophysical Union

The Cascadia Initiative : a sea change In seismological studies of subduction zones

Author Posting. © The Oceanography Society, 2014. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 27, no. 2 (2014): 138-150, doi:10.5670/oceanog.2014.49.Increasing public awareness that the Cascadia subduction zone in the Pacific Northwest is capable of great earthquakes (magnitude 9 and greater) motivates the Cascadia Initiative, an ambitious onshore/offshore seismic and geodetic experiment that takes advantage of an amphibious array to study questions ranging from megathrust earthquakes, to volcanic arc structure, to the formation, deformation and hydration of the Juan De Fuca and Gorda Plates. Here, we provide an overview of the Cascadia Initiative, including its primary science objectives, its experimental design and implementation, and a preview of how the resulting data are being used by a diverse and growing scientific community. The Cascadia Initiative also exemplifies how new technology and community-based experiments are opening up frontiers for marine science. The new technology—shielded ocean bottom seismometers—is allowing more routine investigation of the source zone of megathrust earthquakes, which almost exclusively lies offshore and in shallow water. The Cascadia Initiative offers opportunities and accompanying challenges to a rapidly expanding community of those who use ocean bottom seismic data.The Cascadia Initiative is supported by the National Science Foundation; the CIET is supported under grants OCE- 1139701, OCE-1238023, OCE‐1342503, OCE-1407821, and OCE-1427663 to the University of Oregon

Flux measurements of explosive degassing using a yearlong hydroacoustic record at an erupting submarine volcano

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry Geophysics Geosystems 13 (2012): Q0AF07, doi:10.1029/2012GC004211.The output of gas and tephra from volcanoes is an inherently disorganized process that makes reliable flux estimates challenging to obtain. Continuous monitoring of gas flux has been achieved in only a few instances at subaerial volcanoes, but never for submarine volcanoes. Here we use the first sustained (yearlong) hydroacoustic monitoring of an erupting submarine volcano (NW Rota-1, Mariana arc) to make calculations of explosive gas flux from a volcano into the ocean. Bursts of Strombolian explosive degassing at the volcano summit (520 m deep) occurred at 1–2 min intervals during the entire 12-month hydrophone record and commonly exhibited cyclic step-function changes between high and low intensity. Total gas flux calculated from the hydroacoustic record is 5.4 ± 0.6 Tg a−1, where the magmatic gases driving eruptions at NW Rota-1 are primarily H2O, SO2, and CO2. Instantaneous fluxes varied by a factor of ∼100 over the deployment. Using melt inclusion information to estimate the concentration of CO2 in the explosive gases as 6.9 ± 0.7 wt %, we calculate an annual CO2 eruption flux of 0.4 ± 0.1 Tg a−1. This result is within the range of measured CO2 fluxes at continuously erupting subaerial volcanoes, and represents ∼0.2–0.6% of the annual estimated output of CO2from all subaerial arc volcanoes, and ∼0.4–0.6% of the mid-ocean ridge flux. The multiyear eruptive history of NW Rota-1 demonstrates that submarine volcanoes can be significant and sustained sources of CO2 to the shallow ocean.The National Oceanic and Atmospheric Administration Office of Ocean Exploration and Research, the NOAA Vents Program, and the National Science Foundation (OCE-0751776) for support.2013-05-2

Long-term Explosive Degassing, Debris Flows and Volatile Release at West Mata Submarine Volcano

West Mata is a 1200 m deep submarine volcano where explosive boninite eruptions were observed in 2009. The acoustic signatures from the volcano’s summit eruptive vents Hades and Prometheus were recorded with an in situ (~25m range) hydrophone during ROV dives in May 2009 and with local (~5km range) moored hydrophones between December 2009 and August 2011. The sensors recorded low frequency (1–40 Hz), short duration explosions consistent with magma bubble bursts from Hades,and broadband, 1–5 min duration signals associated with episodes of fragmentation degassing from Prometheus. Long-term eruptive degassing signals, recorded through May 2010, preceded a several month period of declining activity. Degassing episodes were not recorded acoustically after early 2011, although quieter effusive eruption activity may have continued. Synchronous optical measurements of turbidity made between December 2009 and April 2010 indicate that turbidity maxima resulted from occasional south flank slope failures triggered by the collapse of accumulated debris during eruption intervals

Globally aligned photomosaic of the Lucky Strike hydrothermal vent field (Mid-Atlantic Ridge, 37°18.5′N) : release of georeferenced data, mosaic construction, and viewing software

Author Posting. © American Geophysical Union, 2008. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry Geophysics Geosystems 9 (2008): Q12009, doi:10.1029/2008GC002204.We present a georeferenced photomosaic of the Lucky Strike hydrothermal vent field (Mid-Atlantic Ridge, 37°18′N). The photomosaic was generated from digital photographs acquired using the ARGO II seafloor imaging system during the 1996 LUSTRE cruise, which surveyed a ∼1 km2 zone and provided a coverage of ∼20% of the seafloor. The photomosaic has a pixel resolution of 15 mm and encloses the areas with known active hydrothermal venting. The final mosaic is generated after an optimization that includes the automatic detection of the same benthic features across different images (feature-matching), followed by a global alignment of images based on the vehicle navigation. We also provide software to construct mosaics from large sets of images for which georeferencing information exists (location, attitude, and altitude per image), to visualize them, and to extract data. Georeferencing information can be provided by the raw navigation data (collected during the survey) or result from the optimization obtained from image matching. Mosaics based solely on navigation can be readily generated by any user but the optimization and global alignment of the mosaic requires a case-by-case approach for which no universally software is available. The Lucky Strike photomosaics (optimized and navigated-only) are publicly available through the Marine Geoscience Data System (MGDS, http://www.marine-geo.org). The mosaic-generating and viewing software is available through the Computer Vision and Robotics Group Web page at the University of Girona (http://eia.udg.es/∼rafa/mosaicviewer.html).This work has been supported by the EU Marie Curie RTNs MOMARNet (OD, RG, JE, LN, JF, NG) and FREESUBNet (RG, NG, XC), the Spanish Ministry of Science and Innovation (grant CTM2007–64751; RG, JE), CNRS and ANR (grant ANR NT05–3_42212, JE), ICREA (LN), and by the Generalitat de Catalunya (JE, RG). JF has been funded by MICINN under FPI grant BES-2006-12733 and NG has been supported by MICINN under the ‘‘Ramon y Cajal’’ program