On the usefulness of finding charts Or the runaway carbon stars of the Blanco & McCarthy field 37

We have been recently faced with the problem of cross--identifying stars recorded in historical catalogues with those extracted from recent fully digitized surveys (such as DENIS and 2MASS). Positions mentioned in the old catalogues are frequently of poor precision, but are generally accompanied by finding charts where the interesting objects are flagged. Those finding charts are sometimes our only link with the accumulated knowledge of past literature. While checking the identification of some of these objects in several catalogues, we had the surprise to discover a number of discrepancies in recent works.The main reason for these discrepancies was generally the blind application of the smallest difference in position as the criterion to identify sources from one historical catalogue to those in more recent surveys. In this paper we give examples of such misidentifications, and show how we were able to find and correct them.We present modern procedures to discover and solve cross--identification problems, such as loading digitized images of the sky through the Aladin service at CDS, and overlaying entries from historical catalogues and modern surveys. We conclude that the use of good finding charts still remains the ultimate (though time--consuming) tool to ascertain cross--identifications in difficult cases.Comment: 4 pages, 1 figure, accepted by A&

Hydrodynamics of Suspensions of Passive and Active Rigid Particles: A Rigid Multiblob Approach

We develop a rigid multiblob method for numerically solving the mobility problem for suspensions of passive and active rigid particles of complex shape in Stokes flow in unconfined, partially confined, and fully confined geometries. As in a number of existing methods, we discretize rigid bodies using a collection of minimally-resolved spherical blobs constrained to move as a rigid body, to arrive at a potentially large linear system of equations for the unknown Lagrange multipliers and rigid-body motions. Here we develop a block-diagonal preconditioner for this linear system and show that a standard Krylov solver converges in a modest number of iterations that is essentially independent of the number of particles. For unbounded suspensions and suspensions sedimented against a single no-slip boundary, we rely on existing analytical expressions for the Rotne-Prager tensor combined with a fast multipole method or a direct summation on a Graphical Processing Unit to obtain an simple yet efficient and scalable implementation. For fully confined domains, such as periodic suspensions or suspensions confined in slit and square channels, we extend a recently-developed rigid-body immersed boundary method to suspensions of freely-moving passive or active rigid particles at zero Reynolds number. We demonstrate that the iterative solver for the coupled fluid and rigid body equations converges in a bounded number of iterations regardless of the system size. We optimize a number of parameters in the iterative solvers and apply our method to a variety of benchmark problems to carefully assess the accuracy of the rigid multiblob approach as a function of the resolution. We also model the dynamics of colloidal particles studied in recent experiments, such as passive boomerangs in a slit channel, as well as a pair of non-Brownian active nanorods sedimented against a wall.Comment: Under revision in CAMCOS, Nov 201

Identification and geographic distribution of genetic groups of Erysiphe necator in Chilean vineyards

The grapevine powdery mildew, caused by the biotrophic fungus Erysiphe necator, is one of the most important diseases of this crop in Chile. We converted existing single nucleotide polymorphisms in β-tubulin, rDNA intergenic spacer region 1 and eburicol 14-α-demethylase into three cleaved amplified polymorphic sequences (CAPS). These CAPS markers were used for the genetic characterization of Erysiphe necator isolates collected on clusters of Vitis vinifera cv. 'Cabernet Sauvignon' in 23 vineyards across Chile. Among the 105 Chilean isolates analyzed, 103 revealed to belong to genetic group B and 2 to genetic group A. These results correspond to the first report of the presence of genetic groups A and B of E. necator in Chile

Tempo and mode of early gene loss in endosymbiotic bacteria from insects

BACKGROUND: Understanding evolutionary processes that drive genome reduction requires determining the tempo (rate) and the mode (size and types of deletions) of gene losses. In this study, we analysed five endosymbiotic genome sequences of the gamma-proteobacteria (three different Buchnera aphidicola strains, Wigglesworthia glossinidia, Blochmannia floridanus) to test if gene loss could be driven by the selective importance of genes. We used a parsimony method to reconstruct a minimal ancestral genome of insect endosymbionts and quantified gene loss along the branches of the phylogenetic tree. To evaluate the selective or functional importance of genes, we used a parameter that measures the level of adaptive codon bias in E. coli (i.e. codon adaptive index, or CAI), and also estimates of evolutionary rates (Ka) between pairs of orthologs either in free-living bacteria or in pairs of symbionts. RESULTS: Our results demonstrate that genes lost in the early stages of symbiosis were on average less selectively constrained than genes conserved in any of the extant symbiotic strains studied. These results also extend to more recent events of gene losses (i.e. among Buchnera strains) that still tend to concentrate on genes with low adaptive bias in E. coli and high evolutionary rates both in free-living and in symbiotic lineages. In addition, we analyzed the physical organization of gene losses for early steps of symbiosis acquisition under the hypothesis of a common origin of different symbioses. In contrast with previous findings we show that gene losses mostly occurred through loss of rather small blocks and mostly in syntenic regions between at least one of the symbionts and present-day E. coli. CONCLUSION: At both ancient and recent stages of symbiosis evolution, gene loss was at least partially influenced by selection, highly conserved genes being retained more readily than lowly conserved genes: although losses might result from drift due to the bottlenecking of endosymbiontic populations, we demonstrated that purifying selection also acted by retaining genes of greater selective importance

Obstacles, levers and impacts of organic farming development in Camargue

We are presenting an analysis of the obstacles and levers for the development of organic cropping systems in Camargue, documented with a multicriteria analysis of scenarios of organic farming (OF) development. This communication is built using results from on-farm agronomic monitoring, stakeholders and farmers’ interviews and the use of models for integrated assessment of scenarios. At the farm level, the obstacles are related to identification of profitable cropping systems and rotations that include enough rice, conversion being therefore risky as impacting financial management and requiring a labour reorganisation. At the regional level, the constraints are related to the absence of advisory services for technical issues, and to the lack of coordination among the different stakeholders, to the low incentive of the public policies to convert, and to a relatively opaque organization of the supply chains. At the regional level, we analysed the consequences of two scenarios related to OF development on criteria such as the rice surface area, the quantity and quality of water, energy consumption or the employment generated. These results are expected to contribute to the definition of an action plan about OF development by the local stakeholders

Improved Procedures for Purification of the Bandeiraea simplicifolia I Isolectins and Bandeiraea simplicifolia II Lectin by Affinity Chromatography

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/66350/1/j.1432-1033.1980.tb07197.x.pd

Climate dependent contrast in surface mass balance in East Antarctica over the past 216 ka

ABSTRACTDocumenting past changes in the East Antarctic surface mass balance is important to improve ice core chronologies and to constrain the ice-sheet contribution to global mean sea-level change. Here we reconstruct past changes in the ratio of surface mass balance (SMB ratio) between the EPICA Dome C (EDC) and Dome Fuji (DF) East Antarctica ice core sites, based on a precise volcanic synchronization of the two ice cores and on corrections for the vertical thinning of layers. During the past 216 000 a, this SMB ratio, denoted SMBEDC/SMBDF, varied between 0.7 and 1.1, being small during cold periods and large during warm periods. Our results therefore reveal larger amplitudes of changes in SMB at EDC compared with DF, consistent with previous results showing larger amplitudes of changes in water stable isotopes and estimated surface temperature at EDC compared with DF. Within the last glacial inception (Marine Isotope Stages, MIS-5c and MIS-5d), the SMB ratio deviates by up to 0.2 from what is expected based on differences in water stable isotope records. Moreover, the SMB ratio is constant throughout the late parts of the current and last interglacial periods, despite contrasting isotopic trends.This is the accepted manuscript. It is currently embargoed pending publication