Simultaneous Fluorescence and Atomic Force Microscopy to study Mechanically-Induced Bacterial Death in Real Time

Tesis doctoral inédita leída en la Universidad Autónoma de Madrid, Facultad de Ciencias, Departamento de Física de la Materia Condensada. Fecha de lectura: 18-09-2020In the last decades, advanced imaging techniques have improved our ability to analyze biological systems at the micro and nanoscale, and in real time. Microscopy techniques have their own strengths and limitations, so their combination has the potential to provide a more comprehensive understanding of biological processes. This thesis is focused on the development and application of simultaneous fluorescence and atomic force microscopy (AFM) to study mechanically-induced bacterial death. The results reported here provide a quantitative understanding of the mechanical interactions between the AFM tip and bacteria, in the context of emerging mechano-bactericidal nanomaterials. This manuscript is divided into six chapters and one appendix. Chapter 1 provides an overview of the bacterial world and the strategies used over the years to combat the increasing bacterial contamination of surfaces, emphasizing the recent strategy based on mechanical damage. It also describes the microscopy techniques used, highlighting the strengths and weaknesses of each one, and discussing why correlative microscopy is more suitable to study this kind of processes. Chapter 2 describes the general materials and methods applied in this thesis and the software used to analyze experimental data. Chapter 3 provides the groundwork to develop a methodology to successfully combine AFM nanoindentation and fluorescence microscopy simultaneously using fluorescent polymer beads, focusing on the challenges that may arise when simultaneous measurements are performed. In Chapter 4, the methodology was adapted to image bacteria in physiological conditions, and optimal protocols to perform reproducible experiments on living bacteria were found. This optimized methodology in combination with a fluorescent cell membrane integrity marker was successfully applied to quantify the forces needed to rupture the bacterial cell wall. Moreover, a correlation between the forces exerted on bacteria and the kinetics of the fluorescence response is found. Chapter 4 is complemented by Appendix A, which provides the mechanical characterization of the bacterial wall below the rupture point, in order to give a more complete overview of the mechanical properties of the bacterial surface. Chapter 5 explores a different method to assess bacterial viability upon nanoindentation by monitoring the oscillation of the Min system, which reflects bacterial physiology. This method reveals that forces below the breakage point of the cell wall produce a fatigue effect, and provides a quantitative framework to understand low force collisions between bacteria and nanomaterials. These experiments also emphasize the limitation of integrity markers to provide a comprehensive view of bacterial response. The aim of Chapter 6 is to provide coherence and perspective to the main results of the thesis, as well as an outlook on how advanced microscopy methods and future experiments may impact the study of interactions between bacteria and nanotopographical features in the context of mechano-bactericidal nanomaterial

Comparative analysis between a respeaking captioning system and a captioning system without human intervention

People living with deafness or hearing impairment have limited access to information broadcast live on television. Live closed captioning is a currently active area of study; to our knowledge, there is no system developed thus far that produces high-quality captioning results without using scripts or human interaction. This paper presents a comparative analysis of the quality of captions generated for four Spanish news programs by two captioning systems: a semiautomatic system based on respeaking (system currently used by a Spanish TV station) and an automatic system without human interaction proposed and developed by the authors. The analysis is conducted by measuring and comparing the accuracy, latency and speed of the captions generated by both captioning systems. The captions generated by the system presented higher quality considering the accuracy in terms of Word Error Rate (WER between 3.76 and 7.29%) and latency of the captions (approximately 4 s) at an acceptable speed to access the information. We contribute a first study focused on the development and analysis of an automatic captioning system without human intervention with promising quality results. These results reinforce the importance of continuing to study these automatic systems

Structural connectivity in schizophrenia and bipolar disorder: Effects of chronicity and antipsychotic treatment

Previous studies based on graph theory parameters applied to diffusion tensor imaging support an alteration of the global properties of structural connectivity network in schizophrenia. However, the specificity of this alteration and its possible relation with chronicity and treatment have received small attention. We have assessed small-world (SW) and connectivity strength indexes of the structural network built using fractional anisotropy values of the white matter tracts connecting 84 cortical and subcortical regions in 25 chronic and 18 first episode (FE) schizophrenia and 24 bipolar patients and 28 healthy controls. Chronic schizophrenia and bipolar patients showed significantly smaller SW and connectivity strength indexes in comparison with controls and FE patients. SW reduction was driven by increased averaged path-length (PL) values. Illness duration but not treatment doses were negatively associated with connectivity strength, SW and PL in patients. Bipolar patients exposed to antipsychotics did not differ in SW or connectivity strength from bipolar patients without such an exposure. Executive functions and social cognition were related to SW index in the schizophrenia group. Our results support a role for chronicity but not treatment in structural network alterations in major psychoses, which may not differ between schizophrenia and bipolar disorder, and may hamper cognition

Multiple parallel cell lineages in the developing mammalian cerebral cortex

Cortical neurogenesis follows a simple lineage: apical radial glia cells (RGCs) generate basal progenitors, and these produce neurons. How this occurs in species with expanded germinal zones and a folded cortex, such as human, remains unclear. We used single-cell RNA sequencing from individual cortical germinal zones in ferret and barcoded lineage tracking to determine the molecular diversity of progenitor cells and their lineages. We identified multiple RGC classes that initiate parallel lineages, converging onto a common class of newborn neuron. Parallel RGC classes and transcriptomic trajectories were repeated across germinal zones and conserved in ferret and human, but not in mouse. Neurons followed parallel differentiation trajectories in the gyrus and sulcus, with different expressions of human cortical malformation genes. Progenitor cell lineage multiplicity is conserved in the folded mammalian cerebral cortex.This work was supported by ERC-AdG grant Neurocentro-885382 to M.G. and by Spanish State Research Agency grants SAF2015-69168-R, PGC2018-102172-B, and PDI2021-125618NB and “Severo Ochoa” Programme for Centers of Excellence in R&D (CEX-2021-00165-S) to V.B. Additional support was provided by Spanish State Research Agency FPI contract (BES-2016-077737) to L.D.-V.-A., “JdC incorporación” fellowship (IJC2020-044653-I) to V.F., and by Fundación Tatiana Pérez de Guzmán el Bueno fellowship to A.P.-C.With funding from the Spanish government through the "Severo Ochoa Centre of Excellence" accreditation (CEX-2021-00165-S).Peer reviewe

Treatment with tocilizumab or corticosteroids for COVID-19 patients with hyperinflammatory state: a multicentre cohort study (SAM-COVID-19)

Objectives: The objective of this study was to estimate the association between tocilizumab or corticosteroids and the risk of intubation or death in patients with coronavirus disease 19 (COVID-19) with a hyperinflammatory state according to clinical and laboratory parameters. Methods: A cohort study was performed in 60 Spanish hospitals including 778 patients with COVID-19 and clinical and laboratory data indicative of a hyperinflammatory state. Treatment was mainly with tocilizumab, an intermediate-high dose of corticosteroids (IHDC), a pulse dose of corticosteroids (PDC), combination therapy, or no treatment. Primary outcome was intubation or death; follow-up was 21 days. Propensity score-adjusted estimations using Cox regression (logistic regression if needed) were calculated. Propensity scores were used as confounders, matching variables and for the inverse probability of treatment weights (IPTWs). Results: In all, 88, 117, 78 and 151 patients treated with tocilizumab, IHDC, PDC, and combination therapy, respectively, were compared with 344 untreated patients. The primary endpoint occurred in 10 (11.4%), 27 (23.1%), 12 (15.4%), 40 (25.6%) and 69 (21.1%), respectively. The IPTW-based hazard ratios (odds ratio for combination therapy) for the primary endpoint were 0.32 (95%CI 0.22-0.47; p < 0.001) for tocilizumab, 0.82 (0.71-1.30; p 0.82) for IHDC, 0.61 (0.43-0.86; p 0.006) for PDC, and 1.17 (0.86-1.58; p 0.30) for combination therapy. Other applications of the propensity score provided similar results, but were not significant for PDC. Tocilizumab was also associated with lower hazard of death alone in IPTW analysis (0.07; 0.02-0.17; p < 0.001). Conclusions: Tocilizumab might be useful in COVID-19 patients with a hyperinflammatory state and should be prioritized for randomized trials in this situatio

Gestión del conocimiento. Perspectiva multidisciplinaria. Volumen 3

El libro “Gestión del Conocimiento. Perspectiva Multidisciplinaria”, de la colección Unión global, es una publicación internacional, seriada, continua, arbitrada de acceso abierto a todas las áreas del conocimiento, es el esfuerzo de investigadores de varios países del mundo, orientada a contribuir con procesos de gestión del conocimiento científico, tecnológico y humanístico que consoliden la transformación del conocimiento en diferentes escenarios, tanto organizacionales como universitarios, para el desarrollo de habilidades cognitivas del quehacer diario. En este sentido, se presenta a la comunidad internacional el libro Gestión del Conocimiento. Perspectiva Multidisciplinaria Volumen 3, con aportes teóricos y prácticos de autores, cuyos resultados de trabajos de investigación, son análisis de diversas teorías, propuestas, enfoques y experiencias sobre el tema de gestión del conocimiento, lo cual permite el posicionamiento de las organizaciones en la utilización del conocimiento, su apropiación y transformación. Los conceptos o criterios emitidos en cada capítulo del libro, son responsabilidad exclusiva de sus autores

Innovación del Diseño para el Desarrollo Social

Una labor de síntesis alrededor de la gran temática de este libro que surge a partir de una serie de reflexiones y propuestas encaminadas desde la innovación del diseño para el desarrollo social, refleja una invitación al lector para enunciar a partir de su lectura nuevas discusiones sobre el quehacer del diseño con una perspectiva de innovación para este tipo de desarrollo, es pues este texto una invitación a enunciar nuevos retos y diálogos partiendo de reconocer al desarrollo social como uno de los pilares fundamentales desde la Organización de las Naciones Unidas (ONU) como parte fundamental para garantizar el mejoramiento de la vida de las personas. Desde la disciplina del diseño y retomado como eje para su discusión se pretendería establecer una serie de reflexiones y acciones que permitan atender situaciones para grupos minoritarios y vulnerables, así como apoyar esfuerzos encaminados a mejorar la calidad de vida de los integrantes de grupos y sociedades establecidas y recuperar el patrimonio cultural como parte fundamental de las identidades culturales y por tanto de la historia de la humanidad.A lo largo de la historia, el diseño, en cualquiera de sus manifestaciones, ha estado presente en todos los ámbitos. Se ha convertido en una disciplina que evoluciona al ritmo de las sociedades, que se pone al servicio de las necesidades de mercado pero también de las que requieren un abordaje distinto, observadas desde una mirada que concierne a lo social, entendido éste como lo que se reproduce o se instaura en el colectivo, en el grupo, en las comunidades, en las sociedades como parte significativa de sus cotidianeidades. El Diseño desde esta perspectiva acompaña al ser humano produciendo una significación de los objetos como parte fundamental de sus vidas, que transforma una realidad deseada en una realidad concreta, de aquí la importancia de crear una conciencia social para la praxis laboral de esta disciplina. En este sentido el campo profesional, académico y de investigación del diseño debe ocuparse de crear, difundir y divulgar el quehacer de la misma, manifestando un equilibrio entre conciencia, racionalidad y la realidad. Desde el contexto planteado, la Universidad Autónoma del Estado de México, a través de su Facultad de Arquitectura y Diseño presenta en esta obra una serie de reflexiones en torno al papel que desempeña el diseño humanístico, científico y tecnológico desde un enfoque de vanguardia e innovación para el desarrollo social, como resultado de la experiencia vertida en el Coloquio Internacional de Diseño que organiza éste año este espacio académico, en donde cada una de las aportaciones refleja la experiencia de cada uno de sus participantes; con base en ello, el presente libro integrado por una compilación de trabajos ofrece descripciones, análisis y propuestas que contribuyen a la solución de problemas procurando un desarrollo social

Miradas desde la historia social y la historia intelectual: América Latina en sus culturas: de los procesos independistas a la globalización

Fil: Benito Moya, Silvano G. A. Universidad Católica de Córdoba. Facultad de Filosofía y Humanidades; Argentina.Fil: Universidad Católica de Córdoba. Facultad de Filosofía y Humanidades; Argentina

Modelo de opciones reales y aplicación al mercado petrolero

We build a Con di tio nal Real Options mo del VORC which allows for cash flows to be probabilistic and contingent on the average behavior of an external va ria ble; and we apply our mo del to the cru de oil mar ket whe re the in flows on an in vest ment pro ject are con tin gent on the sta te of the base —the dif ference bet ween the fu tu res con tract on an un derl ying as set and it’s pri ce for im me dia te de li very at pre sent (or spot pri ce)—. Our main re sult is that the VORC is a better criteria when evaluating projects with conditional, stochastic cashflows

Modelo Econométrico sobre un Instrumento Estocástico Óptimo de Tasa de Referencia para el Crecimiento de una Economía como la Mexicana.

Considerando que la economía mexicana en los últimos años ha experimentado un crecimiento menor al esperado, pronosticando en los Criterios Generales de Política Económica publicados por el Gobierno Federal cada año, es importante analizar el comportamiento que ha tenido el producto interno bruto (PIB) en relación con la política monetaria restrictiva implementado por el Banco de México (BANXICO). Aplicamos los estudios de Poole [1970] para estudiar posteriormente las reglas de tipo Taylor y desarrollados por Hernández-del-Valle [2004] para probar de manera formal el instrumento óptimo, como es la tasa de referencia. En este sentido utilizamos un modelo econométrico que arroja una función de reacción óptima que muestra el instrumento para un controlador de la variancia de la brecha del producto en una economía como la mexicana, y simulamos nuestra política monetaria en el periodo 1998-2003. Los resultados fundamentales se refieren a que la tasa de interés es un instrumento óptimo para controlar la variancia de la brecha del producto, y que, de haber empleado la función de reacción óptima se hubiera logrado una alta eficiencia en el cumplimiento de nuestro objetivo de crecimiento del producto del 7%