Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018.

Over the past decade, the Nomenclature Committee on Cell Death (NCCD) has formulated guidelines for the definition and interpretation of cell death from morphological, biochemical, and functional perspectives. Since the field continues to expand and novel mechanisms that orchestrate multiple cell death pathways are unveiled, we propose an updated classification of cell death subroutines focusing on mechanistic and essential (as opposed to correlative and dispensable) aspects of the process. As we provide molecularly oriented definitions of terms including intrinsic apoptosis, extrinsic apoptosis, mitochondrial permeability transition (MPT)-driven necrosis, necroptosis, ferroptosis, pyroptosis, parthanatos, entotic cell death, NETotic cell death, lysosome-dependent cell death, autophagy-dependent cell death, immunogenic cell death, cellular senescence, and mitotic catastrophe, we discuss the utility of neologisms that refer to highly specialized instances of these processes. The mission of the NCCD is to provide a widely accepted nomenclature on cell death in support of the continued development of the field

On the Fundamental Causes of High Environmental Alkalinity (pH ≥ 9): An Assessment of Its Drivers and Global Distribution

Very alkaline environments exceeding calcite buffering are globally rare but conspicuous in many sedimentary plains of the World. While the deleterious effects of high alkalinity on soils are well understood, less agreement exists on its causes. We revise these causes to understand these exceptional environments and explain the pervasiveness of calcite buffering elsewhere. We argue that the injection of respired CO2 into stagnant hydrological systems subject to evaporative discharge is the key context for high alkalinization. The evolution of evaporites in nature reaches highly alkaline stages only when excess of (bi)carbonate with respect to divalent cations occurs. In most dry landscapes, evaporating groundwater solutions lose this condition as respired inorganic carbon (recharge zone supply) equilibrates with divalent cations from rocks (whole hydro-trajectory supply). Groundwater in stagnant landscapes avoids this limitation owing to short/shallow trajectories sustaining (bi)carbonate excess until evaporative discharge zones are reached. Flat sedimentary landscapes that are (i) wet enough to develop stagnation and have shallow water tables but (ii) sufficiently dry to expose them to evaporative concentration should host very alkaline soils. This is confirmed with >9,000 soil profiles from the global WISE database, which shows that profiles with pH ≥ 9 in the top meter are 2·7% globally but 18% in areas with low slope (<0·05%, 25-km radius, SRTM digital elevation model (SRTM DEM)) and semiarid–subhumid climate (annual precipitation to potential evapotranspiration ratio = 0·2–1, CRU database). Understanding how climate and vegetation change as well as irrigation practices influence hydrological stagnation and evaporative concentration may provide the key to manage very alkaline environments.Fil: Jobbagy Gampel, Esteban Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - San Luis. Instituto de Matemática Aplicada de San Luis ; ArgentinaFil: Tóth, Tibor. Hungarian Academy of Sciences. Centre for Agricultural Research. Institute for Soil Sciences and Agricultural Chemistry; HungríaFil: Nosetto, Marcelo Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - San Luis. Instituto de Matemática Aplicada de San Luis ; ArgentinaFil: Earman, Sam. Millersville University; Estados Unido