Japan Sea, opening history and mechanism: A synthesis

Laurent Jolivet est Professeur à l'Université d'Orléans au 1er Septembre 2009International audienceThe respective tectonic effects of back arc spreading and continental collision in Asia are considered either as two independent processes or as closely interrelated. Extrusion tectonics assumes that the opening of the South China Sea and the left-lateral motion along the Red River fault are geometrically linked in a pull-apart manner. This model is not accepted by several workers because the structural link between the two processes is not clearly demonstrated. In the case of the Japan Sea, we can show without ambiguity that back arc opening was controlled by large intracontinental strike-slip faults which can be easily understood as effects of the India-Asia collision far from the indenter. The Japan Sea opened in the early Miocene in a broad pull-apart zone between two major dextral strike-slip shear zones. The first one extends from north Sakhalin to central Japan along 2000 km, it has accommodated about 400 km of finite displacement. Deformation along it varies from dextral transpression in the north to dextral transtension in the south. The second is between Korea and SW Japan and has accommodated a smaller displacement of about 200 km. The extensional domain in between lies in the back arc region of Japan. Distributed stretching of the arc crust resulted in the formation of most of the Japan Sea, while localized oceanic spreading at the southern termination of the eastern transpressional shear zone shaped the Japan Basin. The first oceanic crust was formed in a small triangle based on the eastern shear zone, and spreading propagated westward inside the pull-apart region. Timing of oceanic crust formation, of formation of the dextral shear zones and of block rotation in between, as well as the internal structure of the basins and the geometry of deformation along the master shear zones are used to reconstruct the opening history. This evolution is discussed by comparison to other manifestations of the arc and back arc activity, such as the history of sedimentation and volcanism. The paper then suggests that the collision of India can have tectonic consequences as far north as Japan and Sakhalin and describes the geometrical relation of back arc opening there and diffuse extrusion

Timescales for the growth of sediment diapirs in subduction zones

Author Posting. © The Author(s), 2012. This article is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 190 (2012): 1361–1377, doi:10.1111/j.1365-246X.2012.05565.x.In this study, we calculate timescales for the growth of gravitational instabilities forming in the sediment layer on the downgoing slab at subduction zones. Subducted metasediments are buoyant with respect to the overlying mantle and may form diapirs that detach from the slab and rise upwards into the mantle wedge. We use a particle-in-cell, finite-difference method to calculate growth rates for instabilities forming within a buoyant, wet-quartz metasediment layer underlying a dense mantle half-space composed of wet olivine. These growth rates are used to determine where sediment diapirs initiate and detach from the slab over a range of subduction zone thermal structures. We find that, given a sufficient layer thickness (200–800 m, depending on slab-surface and mantle-wedge temperatures), sediment diapirs begin to grow rapidly at depths of ∼80 km and detach from the slab within 1–3 Myr at temperatures ≤900 °C and at depths roughly corresponding to the location of the slab beneath the arc. Diapir growth is most sensitive to absolute slab temperature, however it is also affected by the viscosity ratio between the sediment layer and the mantle wedge and the length-scale over which viscosity decays above the slab. These secondary affects are most pronounced in colder subduction systems with old slabs and faster subduction rates. For a broad range of subduction zone thermal conditions, we find that diapirs can efficiently transport sediments into the mantle wedge, where they would melt and be incorporated into arc magmas. Thus, we conclude that sediment diapirism is a common feature of many subduction zones, providing a potential explanation for the ‘sediment signature’ in the chemistry of arc magmas.This work was supported by NSF Grant EAR-0652707 and a WHOI Deep Ocean Exploration Institute Fellowship to MB

Phylogeography of Supralittoral Rocky Intertidal Ligia Isopods in the Pacific Region from Central California to Central Mexico

Ligia isopods are widely distributed in the Pacific rocky intertidal shores from central California to central Mexico, including the Gulf of California. Yet, their biological characteristics restrict them to complete their life cycles in a very narrow range of the rocky intertidal supralittoral. Herein, we examine phylogeographic patterns of Ligia isopods from 122 localities between central California and central Mexico. We expect to find high levels of allopatric diversity. In addition, we expect the phylogeographic patterns to show signatures of past vicariant events that occurred in this geologically dynamic region.We sequenced two mitochondrial genes (Cytochrome Oxidase I and 16S ribosomal DNA). We conducted Maximum Likelihood and Bayesian phylogenetic analyses. We found many divergent clades that, in general, group according to geography. Some of the most striking features of the Ligia phylogeographic pattern include: (1) deep mid-peninsular phylogeographic breaks on the Pacific and Gulf sides of Baja peninsula; (2) within the Gulf lineages, the northern peninsula is most closely related to the northern mainland, while the southern peninsula is most closely related to the central-southern mainland; and, (3) the southernmost portion of the peninsula (Cape Region) is most closely related to the southernmost portion of mainland.Our results shed light on the phylogenetic relationships of Ligia populations in the study area. This study probably represents the finest-scale phylogeographic examination for any organism to date in this region. Presence of highly divergent lineages suggests multiple Ligia species exist in this region. The phylogeographic patterns of Ligia in the Gulf of California and Baja peninsula are incongruent with a widely accepted vicariant scenario among phylogeographers, but consistent with aspects of alternative geological hypotheses and phylo- and biogeographic patterns of several other taxa. Our findings contribute to the ongoing debate regarding the geological origin of this important biogeographic region

Do trench sediments affect great earthquake occurrence in subduction zones?

Seismic energy release is dominated by the underthrusting earthquakes in subduction zones, and this energy release is further concentrated in a few subduction zones. While some subduction zones are characterized by the occurrence of great earthquakes, others are relatively aseismic. This variation in maximum earthquake size between subduction zones is one of the most important features of global seismicity. Previous work has shown that the variation in maximum earthquake size is correlated with the variation in two other subduction zone properties: age of the subducting lithosphere and convergence rate. These two properties do not explain all the variance in maximum earthquake size. I propose that a third subduction zone property, “trench sediments”, explains part of the remaining variance in maximum earthquake size. Subduction zones are divided into two groups: (1) those with excess trench sediments, and (2) those with horst and graben structure at the trench. Thirteen of the 19 largest subduction zone events, including the three largest, occur in zones with excess trench sediments. About half the zones with excess trench sediments are characterized by great earthquake occurrence. Most of the other zones with excess trench sediments but without great earthquakes are predicted to have small earthquakes by the age-rate correlation. Two notable exceptions are the Oregon-Washington and Middle America zones. Overall, the presence of excess trench sediments appears to enhance great earthquake occurrence. One speculative physical mechanism that connects trench sediments and earthquake size is that excess trench sediments are associated with the subduction of a coherent sedimentary layer, which at elevated temperature and pressure, forms a homogeneous and strong contact zone between the plates.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/43133/1/24_2004_Article_BF00874629.pd

Principles of genetic circuit design

Cells navigate environments, communicate and build complex patterns by initiating gene expression in response to specific signals. Engineers seek to harness this capability to program cells to perform tasks or create chemicals and materials that match the complexity seen in nature. This Review describes new tools that aid the construction of genetic circuits. Circuit dynamics can be influenced by the choice of regulators and changed with expression 'tuning knobs'. We collate the failure modes encountered when assembling circuits, quantify their impact on performance and review mitigation efforts. Finally, we discuss the constraints that arise from circuits having to operate within a living cell. Collectively, better tools, well-characterized parts and a comprehensive understanding of how to compose circuits are leading to a breakthrough in the ability to program living cells for advanced applications, from living therapeutics to the atomic manufacturing of functional materials.National Institute of General Medical Sciences (U.S.) (Grant P50 GM098792)National Institute of General Medical Sciences (U.S.) (Grant R01 GM095765)National Science Foundation (U.S.). Synthetic Biology Engineering Research Center (EEC0540879)Life Technologies, Inc. (A114510)National Science Foundation (U.S.). Graduate Research FellowshipUnited States. Office of Naval Research. Multidisciplinary University Research Initiative (Grant 4500000552

Cell-free synthetic biology for in vitro prototype engineering

Cell-free transcription-translation is an expanding field in synthetic biology as a rapid prototyping platform for blueprinting the design of synthetic biological devices. Exemplar efforts include translation of prototype designs into medical test-kits for onsite identification of viruses (Zika, Ebola), whilst gene circuit cascades can be tested, debugged and re-designed within rapid turnover times. Coupled with mathematical modelling, this discipline lends itself towards the precision engineering of new synthetic life. The next stages of cell-free look set to unlock new microbial hosts that remain slow to engineer and unsuited to rapid iterative design cycles. It is hoped that the development of such systems will provide new tools to aid the transition from cell-free prototype designs to functioning synthetic genetic circuits and engineered natural product pathways in living cells