Editorial Introduction: Embracing the uniqueness

The Co-Editors provide an introduction to the 2021 issue of CCJ

Editorial Introduction

Editorial introduction to CCJ Volume 6:1 202

Editorial Introduction: Transitions Abound

Introduction to the 8th volume of CCJ and reflection on transitions

A conjugate gradient method for the solution of the non-LTE line radiation transfer problem

This study concerns the fast and accurate solution of the line radiation transfer problem, under non-LTE conditions. We propose and evaluate an alternative iterative scheme to the classical ALI-Jacobi method, and to the more recently proposed Gauss-Seidel and Successive Over-Relaxation (GS/SOR) schemes. Our study is indeed based on the application of a preconditioned bi-conjugate gradient method (BiCG-P). Standard tests, in 1D plane parallel geometry and in the frame of the two-level atom model, with monochromatic scattering, are discussed. Rates of convergence between the previously mentioned iterative schemes are compared, as well as their respective timing properties. The smoothing capability of the BiCG-P method is also demonstrated.Comment: Research note: 4 pages, 5 figures, accepted to A&

Identifying the main drivers for the production and maturation of Scots pine tracheids along a temperature gradient

Even though studies monitoring the phenology and seasonal dynamics of the wood formation have accumulated for several conifer species across the Northern Hemisphere, the environmental control of tracheid production and differentiation is still fragmentary. With microcore and environmental data from six stands in Finland and France, we built auto-calibrated data-driven black box models for analyzing the most important factors controlling the tracheid production and maturation in Scots pine stem. In the best models, estimation was accurate to within a fraction of a tracheid per week. We compared the relative results of models built using different predictors, and found that the rate of tracheid production was partly regular but current and previous air temperature had influence on the sites in the middle of the temperature range and photosynthetic production in the coldest ones. The rate of mature cell production was more difficult to relate to the predictors but recent photosynthetic production was included in all successful models.Peer reviewe

Fluorescence polarization assay for inhibitors of the kinase domain of receptor interacting protein 1

Necrotic cell death is prevalent in many different pathological disease states and in traumatic injury. Necroptosis is a form of necrosis that stems from specific signaling pathways, with the key regulator being receptor interacting protein 1 (RIP1), a serine/threonine kinase. Specific inhibitors of RIP1, termed necrostatins, are potent inhibitors of necroptosis. Necrostatins are structurally distinct from one another yet still possess the ability to inhibit RIP1 kinase activity. To further understand the differences in the binding of the various necrostatins to RIP1 and to develop a robust high-throughput screening (HTS) assay, which can be used to identify new classes of RIP1 inhibitors, we synthesized fluorescein derivatives of Necrostatin-1 (Nec-1) and Nec-3. These compounds were used to establish a fluorescence polarization (FP) assay to directly measure the binding of necrostatins to RIP1 kinase. The fluorescein-labeled compounds are well suited for HTS because the assays have a dimethyl sulfoxide (DMSO) tolerance up to 5% and Z? scores of 0.62 (fluorescein–Nec-1) and 0.57 (fluorescein–Nec-3). In addition, results obtained from the FP assays and ligand docking studies provide insights into the putative binding sites of Nec-1, Nec-3, and Nec-4

A new chondrichthyan fauna from the Late Jurassic of the Swiss Jura (Kimmeridgian) dominated by hybodonts, chimaeroids and guitarfishes

© 2017 The Authors. Palaeontology published by John Wiley & Sons Ltd on behalf of The Palaeontological Association. The fossil record of chondrichthyans (sharks, rays and chimaeroids) principally consists of isolated teeth, spines and dermal denticles, their cartilaginous skeleton being rarely preserved. Several Late Jurassic chondrichthyan assemblages have been studied in Europe based on large bulk samples, mainly in England, France, Germany and Spain. The first study of this kind in Switzerland is based on controlled excavations in Kimmeridgian deposits related to the construction of the A16 motorway in the Swiss Jura (Porrentruy, NW Switzerland). This study is based on more than 2000 isolated chondrichthyan remains (teeth, dental plates, spines and dermal denticles) and adds to our knowledge of the chondrichthyan distribution at a regional scale in Europe. We describe and identify this new fauna, define a new species of hybodont with crushing-type dentition (Asteracanthus udulfensis sp. nov.) and report for the first time the carcharhiniform Corysodon cirinensis in Switzerland. By the Late Jurassic, modern neoselachian sharks had overtaken hybodonts in European marine realms, the latter being gradually confined to brackish or freshwater environments. However, while the associated fauna of the Porrentruy platform indicates marine conditions, neoselachian sharks are surprisingly rare. The chondrichthyan assemblage is largely dominated by hybodonts, guitarfishes (rays) and chimaeroids that are all known to be euryhaline. This unexpected chondrichthyan faunal composition questions the presence of fresh to brackish water in the vicinity of the platform, and the occurrence of salinity fluctuations within a general context marine. This could explain the scarcity of neoselachian sharks and the extended success of hybodonts in the Porrentruy area as late as the Late Jurassic

Small-molecule inhibitors of phosphatidylcholine transfer protein/StarD2 identified by high-throughput screening

Phosphatidylcholine transfer protein (PC–TP, also referred to as StarD2) is a highly specific intracellular lipid-binding protein that catalyzes the transfer of phosphatidylcholines between membranes in vitro. Recent studies have suggested that PC–TP in vivo functions to regulate fatty acid and glucose metabolism, possibly via interactions with selected other proteins. To begin to address the relationship between activity in vitro and biological function, we undertook a high-throughput screen to identify small-molecule inhibitors of the phosphatidylcholine transfer activity of PC–TP. After adapting a fluorescence quench assay to measure phosphatidylcholine transfer activity, we screened 114,752 compounds of a small-molecule library. The high-throughput screen identified 14 potential PC–TP inhibitors. Of these, 6 compounds exhibited characteristics consistent with specific inhibition of PC–TP activity, with IC50 values that ranged from 4.1 to 95.0 ?M under conditions of the in vitro assay. These compounds should serve as valuable reagents to elucidate the biological function of PC–TP. Because mice with homozygous disruption of the PC–TP gene (Pctp) are sensitized to insulin action and relatively resistant to the development of atherosclerosis, these inhibitors may also prove to be of value in the management of diabetes and atherosclerotic cardiovascular diseases