Exploring a New Paradigm for Accelerators and Large Experimental Apparatus Control Systems

International audienceThe integration of web technologies and web services has been, in the recent years, one of the major trends in upgrading and developing control systems for accelerators and large experimental apparatuses. Usually, web technologies have been introduced to complement the control systems with smart add-ons and user friendly services or, for instance, to safely allow access to the control system to users from remote sites. In spite of this still narrow spectrum of employment, some software technologies developed for high performance web services, although originally intended and optimized for these particular applications, deserve some features that would allow their deeper integration in a control system and, eventually, use them to develop some of the control system's core components. In this paper we present the conclusion of the preliminary investigations of a new paradigm for an accelerator control system and associated machine data acquisition system (DAQ), based on a synergic combination of network distributed cache memory and a non-relational key/value database. We investigated these technologies with particular interest on performances, namely speed of data storage and retrieve for the network memory, data throughput and queries execution time for the database and, especially, how much this performances can benefit from their inherent scalability. The work has been developed in a collaboration between INFN-LNF and INFN-Roma Tor Vergata

Noise Reduction in the Swept Sine Identification Procedure of Nonlinear Systems

The Hammerstein model identification technique based on swept sine excitation signals proved in numerous applications to be particularly effective for the definition of a model for nonlinear systems. In this paper we address the problem of the robustness of this model parameter estimation procedure in the presence of noise in the measurement step. The relationship between the different functions that enter the identification procedure is analyzed to assess how the presence of additive noise affects model parameters estimation. This analysis allows us to propose an original technique to mitigate the effects of additive noise in order to improve the accuracy of model parameters estimation. The different aspects addressed in the paper and the technique for mitigating the effects of noise on the accuracy of parameter estimation are verified on both synthetic and experimental data acquired with an ultrasonic system. The results of both simulations and experiments on laboratory data confirm the correctness of the assumptions made and the effectiveness of the proposed mitigation methodology

Expression and visualization of Green Fluorescent Protein (GFP) in Neurospora crassa

We report the first successful imaging of GFP expression in Neurospora crassa. GFP was expressed under the control of the heterologous ToxA promoter from Pyrenophora tritici-repentis in transformants carrying multiple or single copies of the GFP construct. GFP was also detected in ascospores but not during earlier stages of the sexual cycle

I libri di Subiaco, il commercio della carta e la civiltà appenninica, secoli XIV-XVI

none1noIl saggio mette in risalto i legami e i collegamenti che ci sono tra i principali centri di produzione della carta in Italia, in particolare il sito di Fabriano, e la prototipografia di Subiaco, dove si stampa il primo libro italiano con la tecnica dei caratteri mobili, nel corso del XV secolo. Tali importanti innovazioni contribuiscono a definire, nel lungo periodo, tra medioevo ed età moderna, i caratteri di una vera e propria civiltà dell'Appennino centrale.openAugusto CiuffettiCiuffetti, August

Necrotrophic Effector Epistasis in the Pyrenophora tritici-repentis-Wheat Interaction

Pyrenophora tritici-repentis, the causal agent of tan spot disease of wheat, mediates disease by the production of host-selective toxins (HST). The known toxins are recognized in an 'inverse' gene-for-gene manner, where each is perceived by the product of a unique locus in the host and recognition leads to disease susceptibility. Given the importance of HSTs in disease development, we would predict that the loss of any of these major pathogenicity factors would result in reduced virulence and disease development. However, after either deletion of the gene encoding the HST ToxA or, reciprocally, heterologous expression of ToxA in a race that does not normally produce the toxin followed by inoculation of ToxA-sensitive and insensitive wheat cultivars, we demonstrate that ToxA symptom development can be epistatic to other HST-induced symptoms. ToxA epistasis on certain ToxA-sensitive wheat cultivars leads to genotype-specific increases in total leaf area affected by disease. These data indicate a complex interplay between host responses to HSTs in some genotypes and underscore the challenge of identifying additional HSTs whose activity may be masked by other toxins. Also, through mycelial staining, we acquire preliminary evidence that ToxA may provide additional benefits to fungal growth in planta in the absence of its cognate recognition partner in the host

Small secreted proteins of pyrenophora tritici-repentis and their role in wheat Infection

Host-selective toxins (HSTs) secreted by the pathogenic isolate of Pyrenophora tritici-repentis, BFP, are major pathogenicity factors in tan spot disease of wheat. Along with characterized HSTs such as Ptr ToxA (ToxA), BFP secretes at least two more uncharacterized toxic components. In an attempt to identify these additional components, 12 candidate genes predicted by comparative genomics were further analyzed by comparing their gene expression with ToxA. Four candidate genes (PTRG-B, -C, -D, and -E) were identified and cloned. PTRG-C was successfully expressed using Pichia pastoris expression system and its protein product shown to be a secreted protein

Evaluating the importance of the tan spot ToxA–Tsn1 interaction in Australian wheat varieties

The necrotrophic fungal pathogen Pyrenophora tritici-repentis (Ptr) causes the major wheat disease tan spot, and produces multiple necrotrophic effectors that contribute to virulence. The proteinaceous effector ToxA induces necrosis in wheat genotypes possessing the Tsn1 gene, although the importance of the ToxA–Tsn1 interaction itself in varietal disease development has not been well studied. Here, 40 Australian spring wheat varieties were assessed for ToxA sensitivity and disease response to a race 1 wildtype Ptr isolate and ToxA-deleted strain at both seedling and tillering growth stages. ToxA sensitivity was generally associated with disease susceptibility, but did not always predict spreading necrotic symptoms. Whilst the majority of Tsn1 varieties exhibited lower disease scores following toxa mutant infection, several exhibited no distinct differences between wildtype and toxa symptoms. This implies that ToxA is not the major determinant in tan spot disease development in some host backgrounds and indicates the presence of additional effectors. Unexpectedly, several tsn1 varieties exhibited a reduction in disease severity following toxa mutant inoculation, which may suggest an indirect role for ToxA in pathogen fitness. Additionally, increased chlorosis was observed following toxa mutant infection in three varieties, and further work is required to determine whether this is likely to be due to ToxA epistasis of ToxC symptoms. Taken together, these observations demonstrate that Ptr interacts with the host in a complex and intricate manner, leading to a variety of disease reactions that are dependent or independent of the ToxA–Tsn1 interaction

Comparative genomics of a plant-pathogenic fungus, pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence

Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of host-selective toxins (HST), which are recognized by their host in a genotype-specific manner. To better understand the mechanisms that have led to the increase in disease incidence related to this pathogen, we sequenced the genomes of three P. tritici-repentis isolates. A pathogenic isolate that produces two known HSTs was used to assemble a reference nuclear genome of approximately 40 Mb composed of 11 chromosomes that encode 12,141 predicted genes. Comparison of the reference genome with those of a pathogenic isolate that produces a third HST, and a nonpathogenic isolate, showed the nonpathogen genome to be more diverged than those of the two pathogens. Examination of gene-coding regions has provided candidate pathogen-specific proteins and revealed gene families that may play a role in a necrotrophic lifestyle. Analysis of transposable elements suggests that their presence in the genome of pathogenic isolates contributes to the creation of novel genes, effector diversification, possible horizontal gene transfer events, identified copy number variation, and the first example of transduplication by DNA transposable elements in fungi.Overall, comparative analysis of these genomes provides evidence that pathogenicity in this species arose through an influx of transposable elements, which created a genetically flexible landscape that can easily respond to environmental changes