Reconstruction of semileptonically decaying beauty hadrons produced in high energy pp collisions

It is well known that in $b$ hadron decays with a single unreconstructible final state particle, the decay kinematics can be solved up to a quadratic ambiguity, without any knowledge of the $b$ hadron momentum. We present a method to infer the momenta of $b$ hadrons produced in hadron collider experiments using information from their reconstructed flight vectors. Our method is strictly agnostic to the decay itself, which implies that it can be validated with control samples of topologically similar decays to fully reconstructible final states. A multivariate regression algorithm based on the flight information provides a $b$ hadron momentum estimate with a resolution of around 60% which is sufficient to select the correct solution to the quadratic equation in around 70% of cases. This will improve the ability of hadron collider experiments to make differential decay rate measurements with semileptonic $b$ hadron decays.Comment: 18 pages, 17 figures. Updated version to be published in JHE

Phylotranscriptomic investigation into the evolution of endothermy in fish

Regional endothermy, where metabolically-derived heat is used to maintain elevated temperatures in parts of the body, has independently evolved in several lineages of pelagic, predatory fish, including billfish, tuna, lamnid sharks and the opah. The lamnid sharks and tunas demonstrate a striking phenotypic convergence, despite 450 million years of independent evolution. This is characterised by a distinctive muscle morphology, which has enabled them to utilise a unique stiff-bodied swimming style and maintain elevated muscular temperatures and metabolic capacities. This has facilitated expansions in thermal niche and increases in swimming speed and exercise recovery rate. We find selection has acted on one gene independently in both groups, glycogenin-1, which is associated with post-exercise glycogen replenishment. Different metabolic pathways have been targeted by selection in either group. Amongst the endothermic fish, there is considerable variability between species in endothermic capacity and cold-tolerance. By investigating diversification among the eight Thunnus tuna species, we find that the three highly cold-tolerant and endothermic bluefin tuna species are paraphyletic. We infer that parallel selection on ancestral genetic variation is likely to have enabled their evolution. This includes selection for variants in genes associated with metabolism and thermogenesis in other animals. Adaptations in the cardiac system of bluefin tuna are crucial to their ability to tolerate cold-water, as their heart operates at ambient temperature yet must supply oxygen for metabolically demanding warm muscle. We show that this elevated cardiac capacity is associated with increased expression of a key sarcoplasmic reticulum calcium-cycling gene, SERCA2b, in the atrium. Tuna muscle has a thermal gradient, with temperatures highest in the centre of the body. We found no upregulation of metabolic or thermogenesis genes in regions of warm muscle, indicating that intrinsic muscular contraction is sufficient for heat production. Our results provide insight into the genomic basis of endothermy in fish.Open Acces

A Challenge to Lepton Universality in B Meson Decays

One of the key assumptions of the Standard Model of fundamental particles is that the interactions of the charged leptons, namely electrons, muons, and taus, differ only because of their different masses. While precision tests comparing processes involving electrons and muons have not revealed any significant violation of this assumption, recent studies involving the higher-mass tau lepton have resulted in observations that challenge lepton universality at the level of four standard deviations. A confirmation of these results would point to new particles or interactions, and could have profound implications for our understanding of particle physics.Comment: 10 pages, 7 figures. Accepted for publication in Natur

Development of the Topological Trigger for LHCb Run 3

The data-taking conditions expected in Run 3 of the LHCb experiment at CERN are unprecedented and challenging for the software and computing systems. Despite that, the LHCb collaboration pioneers the use of a software-only trigger system to cope with the increased event rate efficiently. The beauty physics programme of LHCb is heavily reliant on topological triggers. These are devoted to selecting beauty-hadron candidates inclusively, based on the characteristic decay topology and kinematic properties expected from beauty decays. The following proceeding describes the current progress of the Run 3 implementation of the topological triggers using Lipschitz monotonic neural networks. This architecture offers robustness under varying detector conditions and sensitivity to long-lived candidates, improving the possibility of discovering New Physics at LHCb

Speciation in Howea palms occurred in sympatry, was preceded by ancestral admixture, and was associated with edaphic and phenological adaptation

Howea palms are viewed as one of the most clear-cut cases of speciation in sympatry. The sister species H. belmoreana and H. forsteriana are endemic to the oceanic Lord Howe Island, Australia, where they have overlapping distributions and are reproductively isolated mainly by flowering time differences. However, the potential role of introgression from Australian mainland relatives had not previously been investigated, a process that has recently put other examples of sympatric speciation into question. Furthermore, the drivers of flowering time-based reproductive isolation remain unclear. We sequenced an RNA-seq dataset that comprehensively sampled Howea and their closest mainland relatives (Linospadix, Laccospadix), and collected detailed soil chemistry data on Lord Howe Island to evaluate whether secondary gene flow had taken place and to examine the role of soil preference in speciation. D-statistics analyses strongly support a scenario whereby ancestral Howea hybridised frequently with its mainland relatives, but this only occurred prior to speciation. Expression analysis, population genetic and phylogenetic tests of selection, identified several flowering time genes with evidence of adaptive divergence between the Howea species. We found expression plasticity in flowering time genes in response to soil chemistry as well as adaptive expression and sequence divergence in genes pleiotropically linked to soil adaptation and flowering time. Ancestral hybridisation may have provided the genetic diversity that promoted their subsequent adaptive divergence and speciation, a process that may be common for rapid ecological speciation

Improved performance of the LHCb Outer Tracker in LHC Run 2

The LHCb Outer Tracker is a gaseous detector covering an area of $5\times 6 m^2$ with 12 double layers of straw tubes. The performance of the detector is presented based on data of the LHC Run 2 running period from 2015 and 2016. Occupancies and operational experience for data collected in $p p$, pPb and PbPb collisions are described. An updated study of the ageing effects is presented showing no signs of gain deterioration or other radiation damage effects. In addition several improvements with respect to LHC Run 1 data taking are introduced. A novel real-time calibration of the time-alignment of the detector and the alignment of the single monolayers composing detector modules are presented, improving the drift-time and position resolution of the detector by 20\%. Finally, a potential use of the improved resolution for the timing of charged tracks is described, showing the possibility to identify low-momentum hadrons with their time-of-flight.Comment: 29 pages, 20 figures, minor changes to match the published versio

Extensive genome introgression between domestic ferret and European polecat during population recovery in Great Britain.

peer reviewedThe European polecat (Mustela putorius) is a mammalian predator which occurs across much of Europe east to the Ural Mountains. In Great Britain, following years of persecution the European polecat has recently undergone a population increase due to legal protection and its range now overlaps that of feral domestic ferrets (Mustela putorius furo). During this range expansion, European polecats hybridised with feral domestic ferrets producing viable offspring. Here we carry out population-level whole genome sequencing on domestic ferrets, British European polecats, and European polecats from the European mainland and find high degrees of genome introgression in British polecats outside their previous stronghold, even in those individuals phenotyped as pure polecats. We quantify this introgression and find introgressed genes under selection that may assist in cognitive function and sight

Extensive genome introgression between domestic ferret and European polecat during population recovery in Great Britain

The European polecat (Mustela putorius) is a mammalian predator which occurs across much of Europe east to the Ural Mountains. In Great Britain, following years of persecution the range of the European polecat contracted and by the early 1900s was restricted to unmanaged forests of central Wales. The European polecat has recently undergone a population increase due to legal protection and its range now overlaps that of feral domestic ferrets (Mustela putorius furo). During this range expansion, European polecats hybridized with feral domestic ferrets producing viable offspring. Here, we carry out population-level whole-genome sequencing on 8 domestic ferrets, 19 British European polecats, and 15 European polecats from the European mainland. We used a range of population genomics methods to examine the data, including phylogenetics, phylogenetic graphs, model-based clustering, phylogenetic invariants, ABBA-BABA tests, topology weighting, and Fst. We found high degrees of genome introgression in British polecats outside their previous stronghold, even in those individuals phenotyped as "pure" polecats. These polecats ranged from presumed F1 hybrids (gamma = 0.53) to individuals that were much less introgressed (gamma = 0.2). We quantify this introgression and find introgressed genes containing Fst outliers associated with cognitive function and sight

Differential branching fraction and angular analysis of the decay B0→K∗0μ+μ−

The angular distribution and differential branching fraction of the decay B 0→ K ∗0 μ + μ − are studied using a data sample, collected by the LHCb experiment in pp collisions at s√=7 TeV, corresponding to an integrated luminosity of 1.0 fb−1. Several angular observables are measured in bins of the dimuon invariant mass squared, q 2. A first measurement of the zero-crossing point of the forward-backward asymmetry of the dimuon system is also presented. The zero-crossing point is measured to be q20=4.9±0.9GeV2/c4 , where the uncertainty is the sum of statistical and systematic uncertainties. The results are consistent with the Standard Model predictions