Production and measurement of H2 in rovibrationally excited states

This work describes experiments conducted to achieve a stimulated Raman pumping (SRP) scheme for the state-selective detection of decelerated H2 molecules from a molecular beam. An optical Stark deceleration technique is proposed consisting of trapping H2 molecules in optical lattices. To achieve SRP, two separate experiments were carried out: a (2+1) resonance enhanced multiphoton ionization (REMPI) scheme and a coherent anti-Stokes Raman spectroscopy (CARS) scheme. The (2+1) REMPI experiment was conducted in a non-equilibrium DC glow discharge where ro-vibrationally excited H2 molecules at v = 1 are produced. We successfully measure the H2 (2+1) REMPI spectra at v = 1 vibrational state in this non-equilibrium discharge. In a separate CARS experiment, in which one of the lattice beams is used as a Stokes beam, we verify the pump laser wavelength for the SRP scheme. The outcome of both CARS and REMPI experiments shows good verification of the pump and probe wavelengths respectively. Furthermore, radial temperature measurements for H2 molecules are conducted in the non-equilibrium DC glow discharge using the (2+1) REMPI process. In this experiment, radial vibrational temperature of hydrogen molecules is measured to be over thousands of Kelvin for the first time. The rotational and translational temperatures are determined to be hundreds of Kelvin in these measurements as well

Resolving genetic relationships in manna group of lichens from genus Aspicilia

As in many lichen-forming fungi, species of Aspicilia genus are widely distributed all over the world, but no reports exist about their phylogenetic relations based on molecular biological methods. In thecurrent study the phylogenetic relations of some Aspicilia species mainly manna group of lichens were investigated. The ITS rDNA sequence information of 12 samples from six species were generated. The samples examined were collected from different provinces of Anatolia and all the sequences were aligned with the other allied groups; Pertusaria sp., Thamnolia sp., Dibaeis sp., Diploschistes sp.,Ochrolechia sp. and Lecanora sp. sequence data obtained from GenBank. The phylogenetic tree obtained by minimum evolution analysis displayed two major branches. One of the branches with itssix members (Aspicilia contorta subsp. contorta, A. contorta subsp. hoffmanniana, Aspicilia hispida, Aspicilia fruticulosa, Aspicilia desertorum Aspicilia calcarea) composed solely of Aspicilia samplesfrom Anatolia. Three of the manna groups of lichens were placed in this branch of the tree. The other related taxa from Ostropomycetidae and Lecanoromycetidae took place in the other branch of the treewith Aspicilia samples from Anatolia. Results displayed that manna group of lichens, although do not represent taxonomical unit tend to form a group especially apperent by the Neigbour Joining analysiswith Anatolian samples. Also the sequence information from Anatolian samples displayed that Aspicilia genus is phylogenetically closer to the orders and families from Ostropomycetidae subclass rather than Lecanoromycetidae which support the placement of Hymeneliaceae within Ostropomycetidae

Formation of the sural nerve in foetal cadavers

The purpose of this study was to provide a morphologic description and assessmenton the formation level of the sural nerve (SN) and its components. Alsowe aimed to reveal histological features of the SN components. An anatomicalstudy of the formation of the SN was carried out on 100 limbs from 50 embalmedfoetuses. The results showed that the SN was formed by the union ofthe medial sural cutaneous nerve (MSCN) and the peroneal communicatingbranch (PCB) in 71% of the cases (Type A); the MSCN and PCB are branches ofthe tibial and common peroneal nerve (CPN) or lateral sural cutaneous nerves(LSCN), respectively. Formation level of the SN was at the distal third of the legin 43% of the cases, at the middle third of the leg in 46% of the cases, and atthe upper third of the leg in 11% of the cases. The PCB originated in the CPN in68% and the PCB originated in the LSCN in 3% of the cases. The SN wasformed only by the MSCN in 20% of the cases (Type B). Type C was divided intofour subgroups: in the first group the PCB and fibres of the posterior femoralcutaneous nerve joined the MSCN in 4% of cases; in the second group theMSCN, PCB, and sciatic nerve did not unite and coursed separately in 1% ofcases; in the third group the SN arose directly from the sciatic nerve alone andthe MSCN made a little contribution in 2% of cases; and in the fourth groupthe PCB, fibres of the sciatic nerve, and the MSCN formed the SN in 1% of thecases. The SN was formed only by the PCB in 1% of the cases (Type D). Distancesof the formation level of the SN to the intercondylar line and the lateralmalleolus were measured and also noted. A detailed knowledge of the anatomyof the SN and its contributing nerves are important in many interventionalprocedures

Discovery of non-climacteric and suppressed climacteric bud sport mutations originating from a climacteric Japanese plum cultivar (Prunus salicina Lindl.).

Japanese plums are classified as climacteric; however, some economically important cultivars selected in California produce very little ethylene and require long ripening both "on" and "off" the tree to reach eating-ripe firmness. To unravel the ripening behavior of different Japanese plum cultivars, ripening was examined in the absence (air) or in the presence of ethylene or propylene (an ethylene analog) following a treatment or not with 1-methylcyclopropene (1-MCP, an ethylene action inhibitor). Detailed physiological studies revealed for the first time three distinct ripening types in plum fruit: climacteric, suppressed-climacteric, and non-climacteric. Responding to exogenous ethylene or propylene, the slow-softening supressed-climacteric cultivars produced detectable amounts of ethylene, in contrast to the novel non-climacteric cultivar that produced no ethylene and softened extremely slowly. Genetic analysis using microsatellite markers produced identical DNA profiles for the climacteric cultivars "Santa Rosa" and "July Santa Rosa," the suppressed-climacteric cultivars "Late Santa Rosa," "Casselman," and "Roysum" and the novel non-climacteric "Sweet Miriam," as expected since historic records present most of these cultivars as bud-sport mutations derived initially from "Santa Rosa." This present study provides a novel fruit system to address the molecular basis of ripening and to develop markers that assist breeders in providing high-quality stone fruit cultivars that can remain "on-tree," increasing fruit flavor, saving harvesting costs, and potentially reducing the need for low-temperature storage during postharvest handling

Migratory corridors and foraging hotspots: Critical habitats identified for Mediterranean green turtles

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this recordAim: Levels of sea turtle bycatch in the Mediterranean are thought to be unsustainable. We provide a comprehensive overview of adult green turtle (Chelonia mydas) distribution during nesting, migration and foraging phases, highlighting transitory as well as residential areas of high use to facilitate adequate protection for this long-lived, migratory species. Location: Mediterranean Sea. Methods: Thirty-four females were satellite tracked from breeding grounds in the four countries with major nesting (Cyprus, Turkey, Israel and Syria) for a total of 8521 (mean: 251) tracking days in a collaborative effort to summarize the most comprehensive set of distribution data thus far assembled for this species in the Mediterranean. Results: Ten foraging grounds are identified, with two major hotspots in Libya accounting for >50% of turtles tracked to conclusive endpoints. The coastlines of Egypt and Libya contain high densities of migrating turtles following the nesting season, particularly July-September, and likely also pre-nesting (April-June). A high-use seasonal pelagic corridor running south-west from Turkey and Cyprus to Egypt is also evident, used by >50% of all tracked turtles. Main conclusions: Bycatch levels and mortality rates for the key foraging areas and high-density seasonal pathways identified here are largely unknown and should be investigated as a priority. We recommend that the Gulf of Sirte in Libya be explored as a potential biodiversity hotspot and considered for proposal as a marine protected area (MPA). Green turtle fidelity to nesting beaches, foraging areas and migratory pathways renders them vulnerable to localized threats but enables targeted mitigation measures and protection

Diagnostic value of combined serum biomarkers for the evaluation of liver fibrosis in chronic hepatitis C infection: A multicenter, noninterventional, observational study

Background/Aims: The hepatitis C virus (HCV) infection is important cause of chronic hepatitis. Liver biopsy is considered the gold standard for assessment of fibrosis but this procedure is an invasive procedure. We aimed to evaluate the diagnostic efficiency of non-invasive serum biomarkers, separately and in combinations, on liver fibrosis in treatment-naive chronic hepatitis C (CHC) patients. Materials and Methods: Two hundred and sixteen treatment-naive CHC patients were enrolled from 32 locations across Turkey in this open-labelled, non-interventional prospective observational study. FibroTest®, aspartate aminotransferase-to-platelet ratio index(APRI), aspartate aminotransferase and alanine aminotransferase ratio (AAR), fibrosis index based on four factors (FIB-4), Age-platelet(AP) index and Forns index were measured and compared with Metavir scores got from liver biopsies. Results: Data from 182 patients with baseline liver biopsy were suitable for analysis. One hundred and twenty patients (65.9%) had F0-F1 fibrosis and 62 patients (34.1%) had F2-F4 fibrosis. APRI 0.732 area under the curve(AUC) indicated advanced fibrosis with 69% sensitivity and 77% specificity. FIB-4 0.732 AUC and FibroTest 0.715 AUC indicated advanced fibrosis with 69% and 78.4% sensitivity, and 75% and 71.4% specificity, respectively. The combined use of tests also led to an increase in AUC and specificity. Combinations of FibroTest with APRI and/or FIB-4, and FIB-4 with APRI were optimal for the evaluation of liver fibrosis. Conclusion: Fibrotest, FIB-4, APRI, AP index and Forns index exhibit good diagnostic performance for determining liver fibrosis in CHC patients, and the use of at least two tests together will increase their diagnostic value still further. © Copyright 2018 by The Turkish Society of Gastroenterology

Linear canonical transformations and quantum phase:a unified canonical and algebraic approach

The algebra of generalized linear quantum canonical transformations is examined in the prespective of Schwinger's unitary-canonical basis. Formulation of the quantum phase problem within the theory of quantum canonical transformations and in particular with the generalized quantum action-angle phase space formalism is established and it is shown that the conceptual foundation of the quantum phase problem lies within the algebraic properties of the quantum canonical transformations in the quantum phase space. The representations of the Wigner function in the generalized action-angle unitary operator pair for certain Hamiltonian systems with the dynamical symmetry are examined. This generalized canonical formalism is applied to the quantum harmonic oscillator to examine the properties of the unitary quantum phase operator as well as the action-angle Wigner function.Comment: 19 pages, no figure