Natural or anthropogenic variability? A long-term pattern of the zooplankton communities in an ever-changing transitional ecosystem

The Venice Lagoon is an important site belonging to the Italian Long-Term Ecological Research Network (LTER). Alongside with the increasing trend of water temperature and the relevant morphological changes, in recent years, the resident zooplankton populations have also continued to cope with the colonization by alien species, particularly the strong competitor Mnemiopsis leidyi. In this work, we compared the dynamics of the lagoon zooplankton over a period of 20 years. The physical and biological signals are analyzed and compared to evaluate the hypothesis that a slow shift in the environmental balance of the site, such as temperature increase, sea level rise (hereafter called “marinization”), and competition between species, is contributing to trigger a drift in the internal equilibrium of the resident core zooplankton. Though the copepod community does not seem to have changed its state, some important modifications of structure and assembly mechanisms have already been observed. The extension of the marine influence within the lagoon has compressed the spatial gradients of the habitat and created a greater segregation of the niches available to some typically estuarine taxa and broadened and strengthened the interactions between marine species

The Italian long-term ecosystem research (LTER-Italy) network: results, opportunities, and challenges for coastal transitional ecosystems

1 - The Long-Term Ecosystem Research (LTER) network, now a global reality, was founded on a combination of long-term ecological studies, short-term experiments, and comparisons among sites and eco-domains. 2 - The LTER-Italy network was officially established as a formal member of the LTER international network in 2006, following a wider on-going process in Europe; it currently consists of 22 sites representing the main ecosystem typologies of Italy. Four coastal transitional ecosystem sites are included in the LTER-Italy network: on the northern Peninsula, these include the Venice Lagoon and the lagoons of the Po River Delta, which are characterized by a temperate climate and the influence of tides; and in the southern sector, these include the coastal ecosystems of Sardinia and the Mar Piccolo of Taranto, which are characterized by a Mediterranean climate and the absence of sensible tides. 3 - In this paper, we present and discuss three main issues: the LTER-International and LTER-Europe context, emphasising the most practical issues and activities that must be addressed for the effective organization and maintenance of LTER networks; the history, structure, and perspectives of the national LTER-Italy network; and the opportunities, strengths, and weaknesses related to participation of the LTER-Italy network in the study of coastal transitional ecosystems

Meta-analysis of multidecadal biodiversity trends in Europe

Local biodiversity trends over time are likely to be decoupled from global trends, as local processes may compensate or counteract global change. We analyze 161 long-term biological time series (15-91 years) collected across Europe, using a comprehensive dataset comprising similar to 6,200 marine, freshwater and terrestrial taxa. We test whether (i) local long-term biodiversity trends are consistent among biogeoregions, realms and taxonomic groups, and (ii) changes in biodiversity correlate with regional climate and local conditions. Our results reveal that local trends of abundance, richness and diversity differ among biogeoregions, realms and taxonomic groups, demonstrating that biodiversity changes at local scale are often complex and cannot be easily generalized. However, we find increases in richness and abundance with increasing temperature and naturalness as well as a clear spatial pattern in changes in community composition (i.e. temporal taxonomic turnover) in most biogeoregions of Northern and Eastern Europe. The global biodiversity decline might conceal complex local and group-specific trends. Here the authors report a quantitative synthesis of longterm biodiversity trends across Europe, showing how, despite overall increase in biodiversity metric and stability in abundance, trends differ between regions, ecosystem types, and taxa.peerReviewe

The Copepod Acartia tonsa Dana in a Microtidal Mediterranean Lagoon: History of a Successful Invasion

The Lagoon of Venice has been recognized as a hot spot for the introduction of nonindigenous species. Several anthropogenic factors as well as environmental stressors concurred to make this ecosystem ideal for invasion. Given the zooplankton ecological relevance related to the role in the marine trophic network, changes in the community have implications for environmental management and ecosystem services. This work aims to depict the relevant steps of the history of invasion of the copepod Acartia tonsa in the Venice lagoon, providing a recent picture of its distribution, mainly compared to congeneric residents. In this work, four datasets of mesozooplankton were examined. The four datasets covered a period from 1975 to 2017 and were used to investigate temporal trends as well as the changes in coexistence patterns among the Acartia species before and after A. tonsa settlement. Spatial distribution of A. tonsa was found to be significantly associated with temperature, phytoplankton, particulate organic carbon (POC), chlorophyll a, and counter gradient of salinity, confirming that A. tonsa is an opportunistic tolerant species. As for previously dominant species, Paracartia latisetosa almost disappeared, and Acartia margalefi was not completely excluded. In 2014–2017, A. tonsa was found to be the dominant Acartia species in the lagoon

The non\u2011indigenous Oithona davisae in a Mediterranean transitional environment: coexistence patterns with competing species

The Venice lagoon (VL) has been recognized as a hot spot of introduction of non-indigenous species (NIS), due to several anthropogenic factors and environmental stressors that combined may facilitate NIS invasions. In the last decades an increasing number of zooplankton NIS have been observed in the VL. This work aims to provide a picture of the annual cycle and distribution of the recently recorded non-indigenous copepod Oithona davisae, considering the coexistence patterns with the congeneric resident Oithona nana. Therefore, zooplankton samplings were carried out monthly from August 2016 to July 2017 at five Long-Term Ecological Research LTER stations in the VL. Oithona davisae showed a persistent occurrence throughout the year with the highest abundances in the warm season and in the inner areas, while the congeneric O. nana, showing a different distribution pattern, resulted more abundant near the inlets of the Lagoon, where O. davisae reached the minimum density. Oithona davisae seems to find local conditions that promote its settlement and distribution, especially in the inner and more trophic lagoon sites. In other European coastal embayments or transitional waters, O. davisae occupied the niche left by the indigenous O. nana or can replace this congeneric species through competitive exclusion mechanisms. Our data indicate that, for now, such species replacement has not occurred in the VL. One of the causes is the extreme variety of habitats and niches offered by this environment allowing a balanced coexistence with O. nana and in general with the resident copepod community

Suitability of a dual COI marker for marine zooplankton DNA metabarcoding

As DNA metabarcoding has become an emerging tool for surveying biodiversity, including its application in legally binding assessments, reliable and efficient barcodes are requested, especially for the highly diverse group of zooplankton. This study focuses on comparing the efficiency of two mitochondrial COI barcodes based on the internal primers mlCOIintF and mlCOIintR utilizing mesozooplankton samples collected in a Mediterranean lagoon. Our results indicate that after a slight adjustment, the mlCOIintR primer performs in combination with jdgLCO1490 (herein) very comparably to the much more widely used primer system mlCOIintF/ jgHCO2198+dgHCO2198, in terms of level of taxonomic resolution, species detection and their relative abundance in terms of numbers of reads. As for some groups, like Ctenophora, this barcode is not suitable; a combination of them may be the best option to rely on the Folmer region in its entirety without the risk of losing information for a limited primer match

Planktonic ecological networks support quantification of changes in ecosystem health and functioning

Abstract Plankton communities are the foundation of marine food webs and have a large effect on the dynamics of entire ecosystems. Changes in physicochemical factors strongly influence planktonic organisms and their turnover rates, making their communities useful for monitoring ecosystem health. We studied and compared the planktonic food webs of Palude della Rosa (Venice Lagoon, Italy) in 2005 and 2007. The food webs were developed using a novel approach based on the Monte Carlo random sampling of parameters within specific and realistic ranges to derive 1000 food webs for July of each year. The consumption flows involving Strombididae, Evadne spp. and Podon spp. were identified as the most important in splitting food webs of the July of the two years. Although functional nodes (FNs) differed both in presence and abundance in July of the two years, the whole system indicators showed very similar results. Sediment resuspension acted as a source of stress for the Venice Lagoon, being the most used resource by consumers while inhibiting primary producers by increasing water turbidity. Primary production in the water column was mainly generated by benthic FNs. Although the system was near an equilibrium point, it tended to increase its resilience at the expense of efficiency due to stress. This study highlights the role of plankton communities, which can serve to assess ecosystem health

Environmental DNA metabarcoding reveals spatial and seasonal patterns in the fish community in the Venice Lagoon

Environmental DNA (eDNA) is an emerging tool for assessing biodiversity and understanding spatial and temporal community patterns and processes, directly from DNA sequencing of environmental samples such as air, water, and sediments. We applied eDNA methods to monitor bony fish communities, detecting as well locally allochthonous species, and to reveal seasonal patterns at two sites in the Venice Lagoon. We analyzed 17 water samples collected over 12 months at two ecologically distinct sites by using available primers for teleosts and High Throughput Illumina sequencing. We identified 1,289 amplicon sequence variants (ASVs) assigned to 62 fish taxa. Most of the species known to inhabit or to enter the Venice Lagoon were detected, with eDNA data reflecting differences in fish communities between the internal (freshwater associated) and the external (sea associated) part of the lagoon. Moreover, seasonal trends of migration have been portrayed, highlighting the most involved species and disclosing possible clashes between migration events and the temporary interruption of sea-lagoon connectivity due to MOSE (MOdulo Sperimentale Elettromeccanico). Of interest, the first-time detection of Oceanic puffer (Lagocephalus lagocephalus) DNA in the Venice Lagoon provides evidence of the further northward expansion of this species in the high Adriatic Sea. eDNA successfully profiled fish communities by season and habitat in the Venice Lagoon. Our results support routine application of eDNA to monitor potential ecological consequences of MOSE closures in this World Heritage site

The project EcoNAOS: vision and practice towards an open approach in the Northern Adriatic Sea ecological observatory

The Open Science approach delineates high and inspiring principles. In order to really root them into the scientific community, a cultural shift must occur that can be fostered and achieved mainly through the development of practical case studies. This is particularly relevant in the field of ecology, a highly multidisciplinary science, where the Open Science issue has become a matter of discussion only in very recent years. In particular, in the context of long-term ecological research, enabling open sharing of in-situ and derived long-term ecological data is required to advance research and education in the European and global networks. The creation of marine ecological observatories, able to arrange and maintain integrated, harmonized and coherent long-term ecological observations, is stressed as a relevant step at the European level, for sustaining European marine policies. The Italian national flagship project RITMARE ("Italian research for the sea", http://www.ritmare.it/en/) fostered the development of a marine ecological observatory in the Northern Adriatic Sea (NAS), one of the 25 research parent sites belonging to the Italian Long-Term Ecological Research Network (LTER-Italy, http://www.lteritalia.it), through a dedicated research line. Within this context, we developed a specific task, aimed at testing and applying the Open Science approach to the NAS ecological observatory: "EcoNAOS - Ecological Northern Adriatic Open Science Observatory System". We present our plans and ideas for the application of the Open Science principles, starting from the 50-year ecological dataset of plankton and related biogeochemical parameters collected in the NAS, mainly in the Gulf of Venice. We introduce each of the different steps needed for "opening science": research ideas statement, raw data collection, data harmonization (structural, syntactic and semantic), ancillary data collection/recovery and metadatation, data and metadata publication, software publication, publication of results, and data citation. In order to share different expertise and include different points of view as essential outcomes themselves, researchers from the field of LTER and data management were involved in EcoNAOS since its start. Our final goal is to demonstrate that a change of vision is possible, leading from "publishing ASAP" to "sharing data and information and collaborating ASAP"