Occurrence, feeding ecology, and population structure of two dolphin species, Tursiops aduncus and Delphinus delphis, off the Wild Coast of South Africa

Dolphins are apex predators and their movements, foraging activities and population dynamics play an important role in shaping their environment. Understanding their occurrence, movement patterns, and trophic ecology is essential to their conservation, especially as they are considered sentinel species. The Wild Coast of South Africa’s Eastern Cape, is characterized by the annual sardine (Sardinops sagax) run, which serves as an important foraging event for apex predators, including Indo-Pacific bottlenose (Tursiops aduncus) and long-beaked common dolphins (Delphinus delphis). Despite the ecological significance of this event, no dedicated surveys for these species have previously been conducted in this area. The main objectives of this research were to: investigate long-term occurrence of dolphins during the sardine run to determine if there have been any changes over the past 19 years, as has been predicted from common dolphin dietary investigations and anecdotal evidence; to determine short-term occurrence and movement patterns of selected inshore delphinids within the area, which is characterized by three marine protected areas (MPAs); and to use stable isotope analyses to determine trophic relationships and population structure of bottlenose and common dolphins within the region. Long-term data consisted of 131 opportunistic aerial surveys conducted between May and July over the period 1996 to 2014. Results from these surveys indicate that common dolphins, typically associated with sardines, decreased significantly in average group size over the study period (p=0.0343). Bottlenose dolphins, demonstrated no such trend (p=0.916). For both species, greater majority (> 70% of total counts) of sightings were made inside the MPAs. Short-term boat-based surveys were conducted three times a year between June 2014 and December 2016, contributing to a total of 47 days of surveys divided into three locations: Amathole, Hluleka, and Pondoland, each containing a MPA. Density and group size data were analyzed for both species and photographic identification analysis was performed for photographs of bottlenose dolphin dorsal fins. Results indicate that animal and sighting density did not differ temporally (bottlenose dolphin: sighting density – p=0.398, individual density –p=0.781; common dolphin: sighting density –p=0.472, individual density – p=0.204). Environmental factors (sea surface temperature, depth, substrate, and distance from shore) appeared to have limited effect on individual and sighting density and group size for both species (p>0.05). Photographic identification of bottlenose dolphins resulted in 2149 individuals, with a 11.8% resighting rate, with the highest resighting rate within the Pondoland MPA (16.1%). The resighting count did not differ temporally between monthly survey based on generalized linear models (p=0.866), but did differ between study areas (p<0.0001). These results provide the first evidence of the occurrence of both species of dolphin off the Wild Coast, as they were sighted in this region in all survey months. There was no trend in density based on temporal or environmental factors, which suggests other factors are influencing their occurrence. Resightings of bottlenose dolphins within the area suggest that there is some degree of residency, though the majority of animals were only sighted on a single occasion and there was no plateau in the discovery curve. A total of 256 biopsy samples (bottlenose dolphins =128; common dolphins=128) were collected during boat-based surveys. Bottlenose dolphin samples were also collected from adjacent areas to the southwest (Algoa Bay, n=22) and northeast (KwaZulu-Natal (KZN), n=20) of the Wild Coast to investigate similarities and differences between these areas. Despite a high degree of niche overlap between the two species (41%), common dolphins fed with a broader niche (standard ellipse area probability 0.89) than bottlenose dolphins in the summer and a narrower niche in the winter (probability 0.94). There was a clear spatial variation in the diet of bottlenose dolphins along the coast, with individuals from Algoa Bay and Amathole demonstrating 0% niche overlap with individuals from KZN, but the mechanism for these differences remains unclear as other species from South African waters demonstrate a strong southwest to northeast gradient in nitrogen for the Eastern Cape coastline. This research provides valuable baseline information regarding dolphins off the Wild Coast of South Africa, which remained largely unknown. My results indicate that bottlenose dolphins may be more resident in the Wild Coast than previous predicted, and confirm that common dolphins are highly mobile in this area

Gaze, visual, myoelectric, and inertial data of grasps for intelligent prosthetics

A hand amputation is a highly disabling event, having severe physical and psychological repercussions on a person’s life. Despite extensive efforts devoted to restoring the missing functionality via dexterous myoelectric hand prostheses, natural and robust control usable in everyday life is still challenging. Novel techniques have been proposed to overcome the current limitations, among them the fusion of surface electromyography with other sources of contextual information. We present a dataset to investigate the inclusion of eye tracking and first person video to provide more stable intent recognition for prosthetic control. This multimodal dataset contains surface electromyography and accelerometry of the forearm, and gaze, first person video, and inertial measurements of the head recorded from 15 transradial amputees and 30 able-bodied subjects performing grasping tasks. Besides the intended application for upper-limb prosthetics, we also foresee uses for this dataset to study eye-hand coordination in the context of psychophysics, neuroscience, and assistive robotics

Gaze, visual, myoelectric, and inertial data of grasps for intelligent prosthetics

A hand amputation is a highly disabling event, having severe physical and psychological repercussions on a person’s life. Despite extensive efforts devoted to restoring the missing functionality via dexterous myoelectric hand prostheses, natural and robust control usable in everyday life is still challenging. Novel techniques have been proposed to overcome the current limitations, among them the fusion of surface electromyography with other sources of contextual information. We present a dataset to investigate the inclusion of eye tracking and first person video to provide more stable intent recognition for prosthetic control. This multimodal dataset contains surface electromyography and accelerometry of the forearm, and gaze, first person video, and inertial measurements of the head recorded from 15 transradial amputees and 30 able-bodied subjects performing grasping tasks. Besides the intended application for upper-limb prosthetics, we also foresee uses for this dataset to study eye-hand coordination in the context of psychophysics, neuroscience, and assistive robotics

Exaggerated elastin turnover in young individuals with Marfan Syndrome – new insights from the AIMS trial

Background and aims: The fragmentation and loss of elastic fibre in the tunica media of the aorta is a pathological hallmark of Marfan syndrome (MFS) but the dynamics of elastin degradation and its relationship to aortic size and physiological growth remain poorly understood.Methods: In this post-hoc analysis of the AIMS randomised-controlled trial, the association of plasma desmosine (pDES) - a specific biomarker of mature elastin degradation - with age and aortic size was analysed in 113 patients with MFS and compared to 109 healthy controls.Results: There was a strong association between age and pDES in both groups, with higher pDES levels in the lower age groups compared to adults. During childhood, pDES increased and peaked during early adolescence, and thereafter decreased to lower adult levels. This trend was exaggerated in young individuals with MFS but in those above 25 years of age, pDES levels were comparable to controls despite the presence of aortic root dilation. In MFS children, increased aortic diameter relative to controls was seen at an early age and although the increase in diameter was less after adolescence, aortic root size continued to increase steadily with age. In MFS participants there was an indication of a positive association between baseline pDES levels and aortic root dilatation during up to 5 years of follow up.Conclusion: This study has shown that developmental age has a significant effect on levels of elastin turnover as measured by pDES in MFS individuals as well as healthy controls. This effect is exaggerated in those with MFS with increased levels seen during the period of physiologic development which plateaus towards adulthood. This suggests an early onset of pathophysiology that may present an important opportunity for disease modifying intervention

The Design and Implementation of an Educational Computer Game and Its Study as a Motivational Tool for Middle School ESOL Students

Gemstone Team ILL (Interactive Language Learning)Over the past three years, Team ILL has designed, created and tested a multiplayer computer game intended to complement middle school English Speakers of Other Languages (ESOL) curriculum. Reflecting upon our own language classroom experiences, we wanted to create a game whose entertainment value equaled its educational value, thereby helping us answer our research question ―How effective is our interactive multiplayer computer game as a motivational tool for students?‖ In June 2009, we tested the game in Bates and Annapolis Middle Schools, the two schools in the Anne Arundel County Public School system with the largest ESOL populations. For further understanding of the game‘s potential as an educational tool, we performed a follow-up focus group with ESOL teachers and teachers with an interest in ESOL teaching techniques. Overall, the game was well received by both students and educators and shows potential as a motivating factor in middle school ESOL classrooms

Combined point of care nucleic acid and antibody testing for SARS-CoV-2 following emergence of D614G Spike Variant

Rapid COVID-19 diagnosis in hospital is essential, though complicated by 30-50% of nose/throat swabs being negative by SARS-CoV-2 nucleic acid amplification testing (NAAT). Furthermore, the D614G spike mutant now dominates the pandemic and it is unclear how serological tests designed to detect anti-Spike antibodies perform against this variant. We assess the diagnostic accuracy of combined rapid antibody point of care (POC) and nucleic acid assays for suspected COVID-19 disease due to either wild type or the D614G spike mutant SARS-CoV-2. The overall detection rate for COVID-19 is 79.2% (95CI 57.8-92.9%) by rapid NAAT alone. Combined point of care antibody test and rapid NAAT is not impacted by D614G and results in very high sensitivity for COVID-19 diagnosis with very high specificity

Large scale multifactorial likelihood quantitative analysis of BRCA1 and BRCA2 variants: An ENIGMA resource to support clinical variant classification

The multifactorial likelihood analysis method has demonstrated utility for quantitative assessment of variant pathogenicity for multiple cancer syndrome genes. Independent data types currently incorporated in the model for assessing BRCA1 and BRCA2 variants include clinically calibrated prior probability of pathogenicity based on variant location and bioinformatic prediction of variant effect, co-segregation, family cancer history profile, co-occurrence with a pathogenic variant in the same gene, breast tumor pathology, and case-control information. Research and clinical data for multifactorial likelihood analysis were collated for 1,395 BRCA1/2 predominantly intronic and missense variants, enabling classification based on posterior probability of pathogenicity for 734 variants: 447 variants were classified as (likely) benign, and 94 as (likely) pathogenic; and 248 classifications were new or considerably altered relative to ClinVar submissions. Classifications were compared with information not yet included in the likelihood model, and evidence strengths aligned to those recommended for ACMG/AMP classification codes. Altered mRNA splicing or function relative to known nonpathogenic variant controls were moderately to strongly predictive of variant pathogenicity. Variant absence in population datasets provided supporting evidence for variant pathogenicity. These findings have direct relevance for BRCA1 and BRCA2 variant evaluation, and justify the need for gene-specific calibration of evidence types used for variant classification

Mutational spectrum in a worldwide study of 29,700 families with BRCA1 or BRCA2 mutations.

The prevalence and spectrum of germline mutations in BRCA1 and BRCA2 have been reported in single populations, with the majority of reports focused on White in Europe and North America. The Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA) has assembled data on 18,435 families with BRCA1 mutations and 11,351 families with BRCA2 mutations ascertained from 69 centers in 49 countries on six continents. This study comprehensively describes the characteristics of the 1,650 unique BRCA1 and 1,731 unique BRCA2 deleterious (disease-associated) mutations identified in the CIMBA database. We observed substantial variation in mutation type and frequency by geographical region and race/ethnicity. In addition to known founder mutations, mutations of relatively high frequency were identified in specific racial/ethnic or geographic groups that may reflect founder mutations and which could be used in targeted (panel) first pass genotyping for specific populations. Knowledge of the population-specific mutational spectrum in BRCA1 and BRCA2 could inform efficient strategies for genetic testing and may justify a more broad-based oncogenetic testing in some populations