An efficient multi-objective optimisation method for use in the design of marine protected area networks

An efficient connectivity-based method for multi-objective optimization applicable to the design of marine protected area networks is described. Multi-objective network optimization highlighted previously unreported step changes in the structure of optimal subnetworks for protection associated with minimal changes in cost or benefit functions. This emphasizes the desirability of performing a full, unconstrained, multi-objective optimization for marine spatial planning. Brute force methods, examining all possible combinations of protected and unprotected sites for a network of sites, are impractical for all but the smallest networks as the number of possible networks grows as 2m, where m is the number of sites within the network. A metaheuristic method based around Markov Chain Monte Carlo methods is described which searches for the set of Pareto optimal networks (or a good approximation thereto) given two separate objective functions, for example for network quality or effectiveness, population persistence, or cost of protection. The optimization and search methods are independent of the choice of objective functions and can be easily extended to more than two functions. The speed, accuracy and convergence of the method under a range of network configurations are tested with model networks based on an extension of random geometric graphs. Examination of two real-world marine networks, one designated for the protection of the stony coral Lophelia pertusa, the other a hypothetical man-made network of oil and gas installations to protect hard substrate ecosystems, demonstrates the power of the method in finding multi-objective optimal solutions for networks of up to 100 sites. Results using network average shortest path as a proxy for population resilience and gene flow within the network supports the use of a conservation strategy based around highly connected clusters of sites

Lagrangian ocean analysis: fundamentals and practices

Lagrangian analysis is a powerful way to analyse the output of ocean circulation models and other ocean velocity data such as from altimetry. In the Lagrangian approach, large sets of virtual particles are integrated within the three-dimensional, time-evolving velocity fields. Over several decades, a variety of tools and methods for this purpose have emerged. Here, we review the state of the art in the field of Lagrangian analysis of ocean velocity data, starting from a fundamental kinematic framework and with a focus on large-scale open ocean applications. Beyond the use of explicit velocity fields, we consider the influence of unresolved physics and dynamics on particle trajectories. We comprehensively list and discuss the tools currently available for tracking virtual particles. We then showcase some of the innovative applications of trajectory data, and conclude with some open questions and an outlook. The overall goal of this review paper is to reconcile some of the different techniques and methods in Lagrangian ocean analysis, while recognising the rich diversity of codes that have and continue to emerge, and the challenges of the coming age of petascale computing