Obligate groundwater crustaceans mediate biofilm interactions in a subsurface food web

Food webs in groundwater ecosystems are dominated by only a few top-level consumers, mainly crustaceans. These obligate groundwater dwellers—or stygobites—clearly interact with groundwater biofilm, but it is uncertain whether they affect the abundance and structure of biofilm assemblages. We hypothesized that crustacean stygobites would reduce bacteria and protozoan abundance and alter biofilm assemblage structure. We also hypothesized that high densities of stygobites would remove more bacteria and protozoa than would low densities, and that this difference would become more pronounced over time. First, we established that the amphipods Niphargus fontanus and Niphargus kochianus both ingest biofilm by examining their gut contents. We then conducted 2 microcosm experiments. The 1st experiment showed that both N. fontanus and the isopod Proasellus cavaticus increased protozoan abundance but that bacterial abundance was only slightly reduced in the presence of P. cavaticus. In the 2nd experiment, we determined how zero, low, and high densities of N. kochianus affected the biofilm. The high-density treatment of N. kochianus had significantly higher protozoan abundance than the control and the low-density treatment, and high densities of N. kochianus significantly increased the relative proportions of small- and medium-sized bacteria over time compared with controls. Our controlled microcosm experiments demonstrate that macroinvertebrate stygobites can influence groundwater biofilm assemblages, although the exact mechanisms are not clear. These results support the hypothesis that stygobites influence essential ecosystem services supplied by groundwater ecosystems.DW was supported by a joint studentship from the National Environment Research Council (NERC) and the University of Roehampton, London

Probing linguistic change in Arabic vernaculars: a sociohistorical perspective

It is received wisdom in variationist sociolinguistics that linguistic and social factors go hand in hand in structuring variability in language and any consequent instances of language change. We address the complexity of such factors by exploring data from several Arabic dialects in the eastern Arab World. We demonstrate that language change does not always follow expected phonological trajectories, even in cases where older changes are reconstructed to have operated along so-called universal patterns. In our explanation of recent changes in these dialects, we emphasise the role of social motivations for language change and the interactions between these social constraints and purely linguistic ones. Our analysis of change is supported by historical accounts of variation and change in Arabic. We illustrate how general principles of sociolinguistic theory apply to the Arabic data and provide additional layers of sociolinguistic information that highlight the importance of diverse data for evaluating cross-linguistic generalisations

Chiral Structure of F-actin Bundle Formed by Multivalent Counterions?

The mechanism of multivalent counterion-induced bundle formation by filamentous actin (F-actin) is studied using a coarse-grained model and molecular dynamics simulation. Real diameter size, helically ordered charge distribution and twist rigidity of F-actin are taken into account in our model. The attraction between parallel F-actins induced by multivalent counterions is studied in detail and it is found that the maximum attraction occurs between their closest charged domains. The model F-actins aggregate due to the like-charge attraction and form closely packed bundles. Counterions are mostly distributed in the narrowest gaps between neighboring F-actins inside the bundles and the channels between three adjacent F-actins correspond to low density of the counterions. Density of the counterions varies periodically with a wave length comparable to the separation between consecutive G-actin monomers along the actin polymers. Long-lived defects in the hexagonal order of F-actins in the bundles are observed that their number increases with increasing the bundles size. Combination of electrostatic interactions and twist rigidity has been found not to change the symmetry of F-actin helical conformation from the native 13/6 symmetry. Calculation of zero-temperature energy of hexagonally ordered model F-actins with the charge of the counterions distributed as columns of charge domains representing counterion charge density waves has shown that helical symmetries commensurate with the hexagonal lattice correspond to local minima of the energy of the system. The global minimum of energy corresponds to 24/11 symmetry with the columns of charge domains arranged in the narrowest gaps between the neighboring F-actins.Comment: 9 pages, 10 figures, Published online in Soft Matter journal: http://pubs.rsc.org/en/content/articlelanding/2012/sm/c2sm07104

Detection of chromosome aberrations in the human interphase nucleus by visualization of specific target DNAs with radioactive and non-radioactive in situ hybridization techniques: diagnosis of trisomy 18 with probe L1.84

The localization of chromosome 18 in human interphase nuclei is demonstrated by use of radioactive and nonradioactive in situ hybridization techniques with a DNA clone designated L1.84. This clone represents a distinct subpopulation of the repetitive human alphoid DNA family, located in the centric region of chromosome 18. Under stringent hybridization conditions hybridization of L1.84 is restricted to chromosome 18 and reflects the number of these chromosomes present in the nuclei, namely, two in normal diploid human cells and three in nuclei from cells with trisomy 18. Under conditions of low stringency, cross-hybridization with other subpopulations of the alphoid DNA family occurs in the centromeric regions of the whole chromosome complement, and numerous hybridization sites are detected over interphase nuclei. Detection of chromosome-specific target DNAs by non-radioactive in situ hybridization with appropriate DNA probes cloned from individual chromosomal subregions presents a rapid means of identifying directly numerical or even structural chromosome aberrations in the interphase nucleus. Present limitations and future applications of interphase cytogenetics are discussed

Detection of chromosome aberrations in metaphase and interphase tumor cells by in situ hybridization using chromosome-specific library probes

Chromosome aberrations in two glioma cell lines were analyzed using biotinylated DNA library probes that specifically decorate chromosomes 1, 4, 7, 18 and 22 from pter to qter. Numerical changes, deletions and rearrangements of these chromosomes were radily visualized in metaphase spreads, as well as in early prophase and interphase nuclei. Complete chromosomes, deleted chromosomes and segments of translocated chromosomes were rapidly delineated in very complex karyotypes. Simultaneous hybridizations with additional subregional probes were used to further define aberrant chromosomes. Digital image analysis was used to quantitate the total complement of specific chromosomal DNAs in individual metaphase and interphase cells of each cell line. In spite of the fact that both glioma lines have been passaged in vitro for many years, an under-representation of chromosome 22 and an over-representation of chromosome 7 (specifically 7p) were observed. These observations agree with previous studies on gliomas. In addition, sequences of chromosome 4 were also found to be under-represented, especially in TC 593. These analyses indicate the power of these methods for pinpointing chromosome segments that are altered in specific types of tumors

‘Graphic Medicine’ as a Mental Health Information Resource: Insights from Comics Producers

Recent literature suggests that a growing number of comics are being published on health-related topics, including aspects of mental health and social care (Williams 2012; Czerwiec et al 2015) and that comics are increasingly being used in higher education settings as information resources. This article offers insights from comics creators and disseminators and explores the wider context of comics production and distribution (with a focus on 'Graphic Medicine' or health-related comics) as part of a larger examination of the interface between these documents and potential academic audiences. Original data was gathered through semi-structured interviews with 15 participants actively involved in comics creation and production. Elements of domain analysis (Hjørland 2002) were used to obtain insights into attitudes to the creation, dissemination and use of mental health-related comics. Though potentially useful comics material is being produced in the mental health domain, significant challenges remain for producers in enabling their work to be accessed within higher education settings. This paper suggests that comics producers need to make a concerted effort to reach academia, and academia - including information professionals - need to embrace new types of material to enhance teaching

From Bengali to English: sequential bilingualism of a second-generation British Bangladeshi

The paper discusses sequential language acquisition of the researcher's daughter Safa who transformed from a monolingual Bengali speaker to an almost monolingual English speaker in a few months after moving to the UK. Safa was born in Bangladesh and was a monolingual Bengali speaker until she was three years and nine months when the family moved to the UK. Unlike most research on sequential bilingualism, Safa's transition from Bengali to English went through a period of an invented language, which she developed and used for a few months. Safa then underwent language shift as Bengali became her passive language. Safa's loss of fluency in Bengali was mainly due to the absence of Bengali linguistic environment, because her family lived outside the community. Safa's mother's indifference to Bangladeshi ethnicity and her parents’ positive attitude towards Britishness meant that her decline in Bengali did not cause them much concern. Despite the lack of proficiency in Bengali, Safa still retains a strong ethnic Bangladeshi identity. Tabors and Snow’s four-stage developmental process of sequential second-language acquisition has been applied to find the similarities and differences in Safa's case, while language maintenance and shift theories have contributed to the analysis of the process of her language shift

AusTraits – a curated plant trait database for the Australian flora

We introduce the AusTraits database - a compilation of values of plant traits for taxa in the Australian flora (hereafter AusTraits). AusTraits synthesises data on 448 traits across 28,640 taxa from field campaigns, published literature, taxonomic monographs, and individual taxon descriptions. Traits vary in scope from physiological measures of performance (e.g. photosynthetic gas exchange, water-use efficiency) to morphological attributes (e.g. leaf area, seed mass, plant height) which link to aspects of ecological variation. AusTraits contains curated and harmonised individual- and species-level measurements coupled to, where available, contextual information on site properties and experimental conditions. This article provides information on version 3.0.2 of AusTraits which contains data for 997,808 trait-by-taxon combinations. We envision AusTraits as an ongoing collaborative initiative for easily archiving and sharing trait data, which also provides a template for other national or regional initiatives globally to fill persistent gaps in trait knowledge.Daniel Falster ... Raymond J. Carpenter ... Matthew D. Denton ... Gregory R. Guerin ... Juergen Kellermann ... Samantha E. Munroe ... Benjamin D. Sparrow ... et al

Why honey is effective as a medicine. 1. Its use in modern medicine

Honey has been used as a medicine for thousands of years and its curative properties are well documented. However, modern medicine turned its back on honey and it is only now, with the advent of multi-resistant bacteria, that the antibiotic properties of honey are being rediscovered