Calibrations of hydro-acoustic instruments onboard FORV Sagar Sampada

Calibration is carried out to keep up the precision of the instruments by determining their calibre. CaUbration of hydro acoustic equipments onboard FORV Sagar Sampada was carried out periodically and the performance records were maintained. Deviation and the deficiencies were noted down for applying the correction while interpreting the output of the instruments

Proceedings of the Second workshop on scientific results of FORV Sagar Sampada

Since inception in 1984, the Fisheries and Oceanographic Research Vessel Sagar Sampada, with sophisticated modern facilities onboard, has undertaken more than 140 cruises all over the Indian Ocean primarily in our Exclusive Economic Zone for fishery and oceanographic survey. Scientists from many institutions have made use of this facility to explore the resource potential in our sea and to understand its correlation with the environmental parameters. These survey and exploration efforts are continuing. This volume contains many papers which are the outcome of research work carried out onboard 'Sagar Sampada' during last five years (1989-1993) and presented in a Workshop to evaluate the scientific work. About 60 papers, included in this volume, bring out the results pertaining to environmental assessment, hydrology, productivity estimates, fishery resources availability, fishing technology, pollution monitoring etc. These relate mainly to the Arabian Sea, Bay of Bengal and Lakshadweep, Andaman and Nicobar Islands groups in the EEZ of India. These efforts along with other mission-oriented cruises have yielded valuable information on the fishery resources and their distribution in space and time

Studies on lantern fish (Benthosema pterotum) 1. Biochemical and microbiological investigation

Lantern-fish, an under-utilised fish is present in abundance, all the year round in tropical and sub-tropical waters. Biochemical and microbiological studies carried out on lantern fish, caught from the Gulfs of Oman and Aden are reported in this paper

Immunological mechanisms of intravesical chitosan/interleukin-12 immunotherapy against murine bladder cancer

There is a critical unmet clinical need for bladder cancer immunotherapies capable of inducing durable antitumor immunity. We have shown that four intravesical treatments with a simple co-formulation of interleukin-12 and the biopolymer chitosan not only destroy orthotopic bladder tumors, but also promote a potent long-lasting systemic immune response as evidenced through tumor-specific in vitro killing assays, complete protection from rechallenge, and abscopal antitumor responses at distant non-treated tumors. This study investigates the immunological kinetics underlying these results. We show through depletion studies that CD8+ T cells are required for initial tumor rejection, but CD4+ T cells protect against rechallenge. We also show that even a single intravesical treatment can eliminate tumors in 50% of mice with 6/9 and 7/8 mice eliminating tumors after three or four treatments respectively. We then performed immunophenotyping studies to analyze shifts in immune cell populations after each treatment within the tumor itself as well as in secondary lymphoid organs. These studies demonstrated an initial infiltration of macrophages and granulocytes followed by increased CD4+ and CD8+ effector-memory cells. This was coupled with a decreased level of regulatory T cells in peripheral lymph nodes as well as decreased myeloid-derived suppressor cell infiltration in the bladder. Taken together, these data demonstrate the ability of properly delivered interleukin-12-based therapies to engage adaptive immunity within the tumor itself as well as throughout the body and strengthen the case for clinical translation of chitosan/interleukin-12 as an intravesical treatment for bladder cancer

Why are MD simulated protein folding times wrong?

The question of significant deviations of protein folding times simulated using molecular dynamics from experimental values is investigated. It is shown that in the framework of Markov State Model (MSM) describing the conformational dynamics of peptides and proteins, the folding time is very sensitive to the simulation model parameters, such as forcefield and temperature. Using two peptides as examples, we show that the deviations in the folding times can reach an order of magnitude for modest variations of the molecular model. We, therefore, conclude that the folding rate values obtained in molecular dynamics simulations have to be treated with care

19F labelled glycosaminoglycan probes for solution NMR and non-linear (CARS) microscopy

Studying polysaccharide-protein interactions under physiological conditions by conventional techniques is challenging. Ideally, macromolecules could be followed by both in vitro spectroscopy experiments as well as in tissues using microscopy, to enable a proper comparison of results over these different scales but, often, this is not feasible. The cell surface and extracellular matrix polysaccharides, glycosaminoglycans (GAGs) lack groups that can be detected selectively in the biological milieu. The introduction of 19F labels into GAG polysaccharides is explored and the interaction of a labelled GAG with the heparin-binding protein, antithrombin, employing 19F NMR spectroscopy is followed. Furthermore, the ability of 19F labelled GAGs to be imaged using CARS microscopy is demonstrated. 19F labelled GAGs enable both 19F NMR protein-GAG binding studies in solution at the molecular level and non-linear microscopy at a microscopic scale to be conducted on the same material, essentially free of background signals

A diterpene alkaloid from the needles of Taxus baccata

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Multivalent helix mimetics for PPI-inhibition.

The exploitation of multivalent ligands for the inhibition of protein-protein interactions has not yet been explored as a supramolecular design strategy. This is despite the fact that protein-protein interactions typically occur within the context of multi-protein complexes and frequently exploit avidity effects or co-operative binding interactions to achieve high affinity interactions. In this paper we describe preliminary studies on the use of a multivalent N-alkylated aromatic oligoamide helix mimetic for inhibition of p53/hDM2 and establish that protein dimerisation is promoted, rather than enhanced binding resulting from a higher effective concentration of the ligand. This journal i