Nitrogen modulation of legume root architecture signaling pathways involves phytohormones and small regulatory molecules

Nitrogen, particularly nitrate is an important yield determinant for crops. However, current agricultural practice with excessive fertilizer usage has detrimental effects on the environment. Therefore, legumes have been suggested as a sustainable alternative for replenishing soil nitrogen. Legumes can uniquely form nitrogen-fixing nodules through symbiotic interaction with specialized soil bacteria. Legumes possess a highly plastic root system which modulates its architecture according to the nitrogen availability in the soil. Understanding how legumes regulate root development in response to nitrogen availability is an important step to improving root architecture. The nitrogen-mediated root development pathway starts with sensing soil nitrogen level followed by subsequent signal transduction pathways involving phytohormones, microRNAs and regulatory peptides that collectively modulate the growth and shape of the root system. This review focuses on the current understanding of nitrogen-mediated legume root architecture including local and systemic regulations by different N-sources and the modulations by phytohormones and small regulatory molecules.Nadiatul A. Mohd-Radzman was supported by ANU International PhD Scholarship. This work was supported by an Australian Research Council grant to Michael A. Djordjevic and Nijat Imin (DP140103714)

Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes

BACKGROUND Small, secreted signaling peptides work in parallel with phytohormones to control important aspects of plant growth and development. Genes from the C-TERMINALLY ENCODED PEPTIDE (CEP) family produce such peptides which negatively regulate plant growth, especially under stress, and affect other important developmental processes. To illuminate how the CEP gene family has evolved within the plant kingdom, including its emergence, diversification and variation between lineages, a comprehensive survey was undertaken to identify and characterize CEP genes in 106 plant genomes. RESULTS Using a motif-based system developed for this study to identify canonical CEP peptide domains, a total of 916 CEP genes and 1,223 CEP domains were found in angiosperms and for the first time in gymnosperms. This defines a narrow band for the emergence of CEP genes in plants, from the divergence of lycophytes to the angiosperm/gymnosperm split. Both CEP genes and domains were found to have diversified in angiosperms, particularly in the Poaceae and Solanaceae plant families. Multispecies orthologous relationships were determined for 22% of identified CEP genes, and further analysis of those groups found selective constraints upon residues within the CEP peptide and within the previously little-characterized variable region. An examination of public Oryza sativa RNA-Seq datasets revealed an expression pattern that links OsCEP5 and OsCEP6 to panicle development and flowering, and CEP gene trees reveal these emerged from a duplication event associated with the Poaceae plant family. CONCLUSIONS The characterization of the plant-family specific CEP genes OsCEP5 and OsCEP6, the association of CEP genes with angiosperm-specific development processes like panicle development, and the diversification of CEP genes in angiosperms provides further support for the hypothesis that CEP genes have been integral to the evolution of novel traits within the angiosperm lineage. Beyond these findings, the comprehensive set of CEP genes and their properties reported here will be a resource for future research on CEP genes and peptides.We thank Jason Bragg for his input and advice on inferring gene trees. This work was supported by an Australian Research Council Discovery Project grant (DP120101893). HAO received financial support (UHS10488) to conduct this study from the Grains Research and Development Council

Extraction of the Composition of Olive Pits with Various Solvents

We have studied samples obtained from olive pits of different dimensions, determined the method for obtaining powder from olive pits, and also studied the best suitable time for collection. Crushed to a powder of powder and to particles of hard bones, they were placed in test tubes and filled with solvents. The solutions obtained by extraction with several solvents from the crushed powder of olive pits, collected in October 2021 in the Surakhani district of Baku, showed the best result. The resulting concentrates were studied and the optical density of the solutions was determined by UV spectroscopy; a method based on the Lambert–Bouguer–Beeroscopy law was applied

Solution NMR studies of the plant peptide hormone CEP inform function

AbstractThe C-terminally Encoded Peptide (CEP) family of regulatory peptides controls root development in vascular plants. Here, we present the first NMR structures of CEP. We show that root-knot nematode (RKN: Meloidogyne spp.) also encodes CEP, presumably to mimic plant CEP as part of their stereotypic, parasitic interaction with vascular plants. Molecular dynamics simulations of plant- and nematode-encoded CEP displaying known posttranslational modifications (PTM) provided insight into the structural effects of PTM and the conformational plasticity and rigidity of CEP. Potential mechanisms of action are discussed with respect to the structure and sampling of conformational space

Iron Sulfide Scale Inhibition in Carbonate Reservoirs

Hydrocarbon production operations include water injection, varying stimulation approaches, and enhanced oil recovery techniques. These treatments often affect reservoir formation, production, and injection facilities. Such sorts of well operations cause the formation of organic and inorganic scales in the near-wellbore region and various production and injection structures. Downhole squeeze treatment is commonly used as a control measure to prevent scale precipitation. A scale inhibitor solution is introduced into a formation by applying a squeeze treatment. The method allows scale inhibitors to adsorb on the internal rock surface to avoid settling down the scale precipitates. Thus, the study of adsorption of different types of inhibitors to prevent scale formation on the reservoir rock through the execution of downhole squeeze treatment is becoming necessary. This study incorporated different experimental techniques, including dynamic adsorption experiments of chelating agents employing a coreflooding setup, inductively coupled plasma-optical emission spectrometry (ICP-OES) to inhibit the formation of iron-containing scales in limestone rocks, and ζ-potential measurements targeting determination of iron precipitation in varying pH environments on calcite minerals. The influence of the inhibitor soaking time and salt existence in the system on chelating agent adsorption was also evaluated in the coreflooding experiments. The findings based on the coreflooding tests reveal that the concentration of chelating agents plays a significant role in their adsorption on carbonate rocks. The treatments with 20 wt % ethylenediaminetetraacetic acid (EDTA) and 20 wt % diethylenetriaminepentaacetic acid produced the highest adsorption capacity in limestone rock samples by inhibiting 84 and 85% of iron(III) ions, respectively. Moreover, the presence of the salts (CaCl2 and MgCl2) considerably decreased the adsorption of 10 wt % EDTA to 56% (CaCl2) and 52% (MgCl2) and caused nearly 20% more permeability reduction, while more inhibitor soaking time resulted in comparably higher adsorption and lesser permeability diminution. The results of ζ-potential measurements showed that the pH environment controls iron(II) and (III) precipitation, and iron(III) starts to deposit from a low pH region, whereas iron(II) precipitates in increased pH environments in calcite minerals.The authors acknowledge the College of Petroleum Engineering and Geosciences at the King Fahd University of Petroleum and Minerals for providing laboratory facilities and financial support for conducting this research.Scopu

Structure and Magnetism of the Rh4+-containing perovskite oxides La0.5Sr0.5Mn0.5Rh0.5O3 and La0.5Sr0.5Fe0.5Rh0.5O3

Synchrotron X-ray powder diffraction data indicate that La0.5Sr0.5Mn0.5Rh0.5O3 and La0.5Sr0.5Fe0.5Rh0.5O3 adopt distorted perovskite structures (space group Pnma) with A-site and B-site cation disorder. A combination of XPS and 57Fe Mössbauer data indicate the transition metal cations in the two phases adopt Mn3+/Rh4+ and Fe3+/Rh4+ oxidation state combinations respectively. Transport data indicate both phases are insulating, with ρ vs. T dependences consistent with 3D variable-range hopping. Magnetisation data reveal that La0.5Sr0.5Mn0.5Rh0.5O3 adopts a ferromagnetic state below Tc ∼ 60 K, which is rationalized on the basis of coupling via a dynamic Jahn–Teller distortion mechanism. In contrast, magnetic data reveal La0.5Sr0.5Fe0.5Rh0.5O3 undergoes a transition to a spin-glass state at T ∼ 45 K, attributed to frustration between nearest-neighbour Fe–Rh and next-nearest-neighbour Fe–Fe couplings

Border sequences of Medicago truncatula CLE36 are specifically cleaved by endoproteases common to the extracellular fluids of Medicago and soybean

CLE (CLAVATA3/ESR-related) peptides are developmental regulators that are secreted into the apoplast. Little is known about the role of the sequences that flank CLE peptides in terms of their biological activity or how they are targeted by proteases that are known to liberate the final active CLE peptides from their precursor sequences. The biological activity of Medicago truncatula CLE36, which possesses broadly conserved border sequences flanking the putative final active CLE36 peptide product, was assessed. Using in vitro root growth assays and an in vitro root and callus formation assay it is shown that CLE36 peptides of different lengths possess differential biological activities. Using mass spectrometry, Glycine max and Medicago extracellular fluids were each shown to possess an endoproteolytic activity that recognizes and cleaves at border sequences in a synthetic 31 amino acid CLE36 ‘propeptide bait’ to liberate biologically active peptide products. Inhibitor studies suggest that a subtilisin, in combination with a carboxypeptidase, liberated and trimmed CLE36, respectively, to form biologically relevant 11–15 amino acid cleavage products. The 15 amino acid cleavage product is more biologically potent on Arabidopsis than shorter or longer CLE peptides. In situ hybridization shows that the soybean orthologue of CLE36 (GmCLE34) is expressed in the provascular tissue. The results suggest that secreted subtilisins can specifically recognize the border sequences of CLE36 propeptides and liberate biologically active cleavage products. These secreted proteases may affect the stability and biological activity of CLE peptides in the apoplast or be involved in CLE36 processing

Are agriculture and nutrition policies and practice coherent? Stakeholder evidence from Afghanistan

Despite recent improvements in the national average, stunting levels in Afghanistan exceed 70% in some Provinces. Agriculture serves as the main source of livelihood for over half of the population and has the potential to be a strong driver of a reduction in under-nutrition. This article reports research conducted through interviews with stakeholders in agriculture and nutrition in the capital, Kabul, and four provinces of Afghanistan, to gain a better understanding of the institutional and political factors surrounding policy making and the nutrition-sensitivity of agriculture. Semi-structured interviews were conducted with a total of 46 stakeholders from central government and four provinces, including staff from international organizations, NGOs and universities. We found evidence of interdisciplinary communication at the central level and within Provinces, but little evidence of vertical coordination in policy formulation and implementation between the centre and Provinces. Policy formulation and decision making were largely sectoral, top-down, and poorly contextualised. The weaknesses identified in policy formulation, focus, knowledge management, and human and financial resources inhibit the orientation of national agricultural development strategies towards nutrition-sensitivity. Integrating agriculture and nutrition policies requires explicit leadership from the centre. However, effectiveness of a food-based approach to reducing nutrition insecurity will depend on decentralising policy ownership to the regions and provinces through stronger subnational governance. Security and humanitarian considerations point to the need to manage and integrate in a deliberate way the acute humanitarian care and long-term development needs, of which malnutrition is just one element

New role for a CEP peptide and its receptor : complex control of lateral roots

Optimized root system deployment should enable more efficient nutrient acquisition and increased crop yields. C-TERMINALLY ENCODED PEPTIDE (CEP) hormones and their receptors, which regulate root growth, could be important in research with this aim. Roberts et al. (pages 4889–4899 in this issue) suggest that the full extent of CEP function and signalling is highly complex, and we emerge with a picture of CEPs and their known receptors being involved in long-distance and possibly more local regulatory networks.This work was supported by an Australian Research Council grant to MAD (DP150104250); MT was supported by an Australian Postgraduate Award