JOINT CODING OF MULTIMODAL BIOMEDICAL IMAGES US ING CONVOLUTIONAL NEURAL NETWORKS

The massive volume of data generated daily by the gathering of medical images with different modalities might be difficult to store in medical facilities and share through communication networks. To alleviate this issue, efficient compression methods must be implemented to reduce the amount of storage and transmission resources required in such applications. However, since the preservation of all image details is highly important in the medical context, the use of lossless image compression algorithms is of utmost importance. This thesis presents the research results on a lossless compression scheme designed to encode both computerized tomography (CT) and positron emission tomography (PET). Different techniques, such as image-to-image translation, intra prediction, and inter prediction are used. Redundancies between both image modalities are also investigated. To perform the image-to-image translation approach, we resort to lossless compression of the original CT data and apply a cross-modality image translation generative adversarial network to obtain an estimation of the corresponding PET. Two approaches were implemented and evaluated to determine a PET residue that will be compressed along with the original CT. In the first method, the residue resulting from the differences between the original PET and its estimation is encoded, whereas in the second method, the residue is obtained using encoders inter-prediction coding tools. Thus, in alternative to compressing two independent picture modalities, i.e., both images of the original PET-CT pair solely the CT is independently encoded alongside with the PET residue, in the proposed method. Along with the proposed pipeline, a post-processing optimization algorithm that modifies the estimated PET image by altering the contrast and rescaling the image is implemented to maximize the compression efficiency. Four different versions (subsets) of a publicly available PET-CT pair dataset were tested. The first proposed subset was used to demonstrate that the concept developed in this work is capable of surpassing the traditional compression schemes. The obtained results showed gains of up to 8.9% using the HEVC. On the other side, JPEG2k proved not to be the most suitable as it failed to obtain good results, having reached only -9.1% compression gain. For the remaining (more challenging) subsets, the results reveal that the proposed refined post-processing scheme attains, when compared to conventional compression methods, up 6.33% compression gain using HEVC, and 7.78% using VVC

Verilog implementation of the VESA DSC compression algorithm

O trabalho consiste em implementar em verilog o Standard de compressão VESA DSC v1.1. O projecto está na fase de teste e optimização para cumprir restrições de timming. É esperado estar concluido nos inicios de Junho. Feito isto será feita uma comparação entre uma abordagem usando ferramentes de síntese de alto nível e a abordagem "manual" (RTL

LIDAR data classification and compression

Airborne Laser Detection and Ranging (LIDAR) data has a wide range of applications in agriculture, archaeology, biology, geology, meteorology, military and transportation, etc. LIDAR data consumes hundreds of gigabytes in a typical day of acquisition, and the amount of data collected will continue to grow as sensors improve in resolution and functionality. LIDAR data classification and compression are therefore very important for managing, visualizing, analyzing and using this huge amount of data. Among the existing LIDAR data classification schemes, supervised learning has been used and can obtain up to 96% of accuracy. However some of the features used are not readily available, and the training data is also not always available in practice. In existing LIDAR data compression schemes, the compressed size can be 5%-23% of the original size, but still could be in the order of gigabyte, which is impractical for many applications. The objectives of this dissertation are (1) to develop LIDAR classification schemes that can classify airborne LIDAR data more accurately without some features or training data that existing work requires; (2) to explore lossy compression schemes that can compress LIDAR data at a much higher compression rate than is currently available. We first investigate two independent ways to classify LIDAR data depending on the availability of training data: when training data is available, we use supervised machine learning techniques such as support vector machine (SVM); when training data is not readily available, we develop an unsupervised classification method that can classify LIDAR data as good as supervised classification methods. Experimental results show that the accuracy of our classification results are over 99%. We then present two new lossy LIDAR data compression methods and compare their performance. The first one is a wavelet based compression scheme while the second one is geometry based. Our new geometry based compression is a geometry and statistics driven LIDAR point-cloud compression method which combines both application knowledge and scene content to enable fast transmission from the sensor platform while preserving the geometric properties of objects within a scene. The new algorithm is based on the idea of compression by classification. It utilizes the unique height function simplicity as well as the local spatial coherence and linearity of the aerial LIDAR data and can automatically compress the data to the desired level-of-details defined by the user. Either of the two developed classification methods can be used to automatically detect regions that are not locally linear such as vegetations or trees. In those regions, the local statistics descriptions, such as mean, variance, expectation, etc., are stored to efficiently represent the region and restore the geometry in the decompression phase. The new geometry-based compression schemes for building and ground data can compress efficiently and significantly reduce the file size, while retaining a good fit for the scalable "zoom in" requirements. Experimental results show that compared with existing LIDAR lossy compression work, our proposed approach achieves two orders of magnitude lower bit rate with the same quality, making it feasible for applications that were not practical before. The ability to store information into a database and query them efficiently becomes possible with the proposed highly efficient compression scheme.Includes bibliographical references (pages 106-116)

3D Reconstruction of Small Solar System Bodies using Rendered and Compressed Images

Synthetic image generation and reconstruction of Small Solar System Bodies and the influence of compression is becoming an important study topic because of the advent of small spacecraft in deep space missions. Most of these missions are fly-by scenarios, for example in the Comet Interceptor mission. Due to limited data budgets of small satellite missions, maximising scientific return requires investigating effects of lossy compression. A preliminary simulation pipeline had been developed that uses physics-based rendering in combination with procedural terrain generation to overcome limitations of currently used methods for image rendering like the Hapke model. The rendered Small Solar System Body images are combined with a star background and photometrically calibrated to represent realistic imagery. Subsequently, a Structure-from-Motion pipeline reconstructs three-dimensional models from the rendered images. In this work, the preliminary simulation pipeline was developed further into the Space Imaging Simulator for Proximity Operations software package and a compression package was added. The compression package was used to investigate effects of lossy compression on reconstructed models and the possible amount of data reduction of lossy compression to lossless compression. Several scenarios with varying fly-by distances ranging from 50 km to 400 km and body sizes of 1 km and 10 km were simulated and compressed with lossless and several quality levels of lossy compression using PNG and JPEG 2000 respectively. It was found that low compression ratios introduce artefacts resembling random noise while high compression ratios remove surface features. The random noise artefacts introduced by low compression ratios frequently increased the number of vertices and faces of the reconstructed three-dimensional model

Scalable light field representation and coding

This Thesis aims to advance the state-of-the-art in light field representation and coding. In this context, proposals to improve functionalities like light field random access and scalability are also presented. As the light field representation constrains the coding approach to be used, several light field coding techniques to exploit the inherent characteristics of the most popular types of light field representations are proposed and studied, which are normally based on micro-images or sub-aperture-images. To encode micro-images, two solutions are proposed, aiming to exploit the redundancy between neighboring micro-images using a high order prediction model, where the model parameters are either explicitly transmitted or inferred at the decoder, respectively. In both cases, the proposed solutions are able to outperform low order prediction solutions. To encode sub-aperture-images, an HEVC-based solution that exploits their inherent intra and inter redundancies is proposed. In this case, the light field image is encoded as a pseudo video sequence, where the scanning order is signaled, allowing the encoder and decoder to optimize the reference picture lists to improve coding efficiency. A novel hybrid light field representation coding approach is also proposed, by exploiting the combined use of both micro-image and sub-aperture-image representation types, instead of using each representation individually. In order to aid the fast deployment of the light field technology, this Thesis also proposes scalable coding and representation approaches that enable adequate compatibility with legacy displays (e.g., 2D, stereoscopic or multiview) and with future light field displays, while maintaining high coding efficiency. Additionally, viewpoint random access, allowing to improve the light field navigation and to reduce the decoding delay, is also enabled with a flexible trade-off between coding efficiency and viewpoint random access.Esta Tese tem como objetivo avançar o estado da arte em representação e codificação de campos de luz. Neste contexto, são também apresentadas propostas para melhorar funcionalidades como o acesso aleatório ao campo de luz e a escalabilidade. Como a representação do campo de luz limita a abordagem de codificação a ser utilizada, são propostas e estudadas várias técnicas de codificação de campos de luz para explorar as características inerentes aos seus tipos mais populares de representação, que são normalmente baseadas em micro-imagens ou imagens de sub-abertura. Para codificar as micro-imagens, são propostas duas soluções, visando explorar a redundância entre micro-imagens vizinhas utilizando um modelo de predição de alta ordem, onde os parâmetros do modelo são explicitamente transmitidos ou inferidos no decodificador, respetivamente. Em ambos os casos, as soluções propostas são capazes de superar as soluções de predição de baixa ordem. Para codificar imagens de sub-abertura, é proposta uma solução baseada em HEVC que explora a inerente redundância intra e inter deste tipo de imagens. Neste caso, a imagem do campo de luz é codificada como uma pseudo-sequência de vídeo, onde a ordem de varrimento é sinalizada, permitindo ao codificador e decodificador otimizar as listas de imagens de referência para melhorar a eficiência da codificação. Também é proposta uma nova abordagem de codificação baseada na representação híbrida do campo de luz, explorando o uso combinado dos tipos de representação de micro-imagem e sub-imagem, em vez de usar cada representação individualmente. A fim de facilitar a rápida implantação da tecnologia de campo de luz, esta Tese também propõe abordagens escaláveis de codificação e representação que permitem uma compatibilidade adequada com monitores tradicionais (e.g., 2D, estereoscópicos ou multivista) e com futuros monitores de campo de luz, mantendo ao mesmo tempo uma alta eficiência de codificação. Além disso, o acesso aleatório de pontos de vista, permitindo melhorar a navegação no campo de luz e reduzir o atraso na descodificação, também é permitido com um equilíbrio flexível entre eficiência de codificação e acesso aleatório de pontos de vista

A practical comparison between two powerful PCC codec’s

Recent advances in the consumption of 3D content creates the necessity of efficient ways to visualize and transmit 3D content. As a result, methods to obtain that same content have been evolving, leading to the development of new methods of representations, namely point clouds and light fields. A point cloud represents a set of points with associated Cartesian coordinates associated with each point(x, y, z), as well as being able to contain even more information inside that point (color, material, texture, etc). This kind of representation changes the way on how 3D content in consumed, having a wide range of applications, from videogaming to medical ones. However, since this type of data carries so much information within itself, they are data-heavy, making the storage and transmission of content a daunting task. To resolve this issue, MPEG created a point cloud coding normalization project, giving birth to V-PCC (Video-based Point Cloud Coding) and G-PCC (Geometry-based Point Cloud Coding) for static content. Firstly, a general analysis of point clouds is made, spanning from their possible solutions, to their acquisition. Secondly, point cloud codecs are studied, namely VPCC and G-PCC from MPEG. Then, a state of art study of quality evaluation is performed, namely subjective and objective evaluation. Finally, a report on the JPEG Pleno Point Cloud, in which an active colaboration took place, is made, with the comparative results of the two codecs and used metrics.Os avanços recentes no consumo de conteúdo 3D vêm criar a necessidade de maneiras eficientes de visualizar e transmitir conteúdo 3D. Consequentemente, os métodos de obtenção desse mesmo conteúdo têm vindo a evoluir, levando ao desenvolvimento de novas maneiras de representação, nomeadamente point clouds e lightfields. Um point cloud (núvem de pontos) representa um conjunto de pontos com coordenadas cartesianas associadas a cada ponto (x, y, z), além de poder conter mais informação dentro do mesmo (cor, material, textura, etc). Este tipo de representação abre uma nova janela na maneira como se consome conteúdo 3D, tendo um elevado leque de aplicações, desde videojogos e realidade virtual a aplicações médicas. No entanto, este tipo de dados, ao carregarem com eles tanta informação, tornam-se incrivelmente pesados, tornando o seu armazenamento e transmissão uma tarefa hercúleana. Tendo isto em mente, a MPEG criou um projecto de normalização de codificação de point clouds, dando origem ao V-PCC (Video-based Point Cloud Coding) e G-PCC (Geometry-based Point Cloud Coding) para conteúdo estático. Esta dissertação tem como objectivo uma análise geral sobre os point clouds, indo desde as suas possívei utilizações à sua aquisição. Seguidamente, é efectuado um estudo dos codificadores de point clouds, nomeadamente o V-PCC e o G-PCC da MPEG, o estado da arte da avaliação de qualidade, objectiva e subjectiva, e finalmente, são reportadas as actividades da JPEG Pleno Point Cloud, na qual se teve uma colaboração activa

High Dynamic Range Images Coding: Embedded and Multiple Description

The aim of this work is to highlight and discuss a new paradigm for representing high-dynamic range (HDR) images that can be used for both its coding and describing its multimedia content. In particular, the new approach defines a new representation domain that, conversely from the classical compressed one, enables to identify and exploit content metadata. Information related to content are used here to control both the encoding and the decoding process and are directly embedded in the compressed data stream. Firstly, thanks to the proposed solution, the content description can be quickly accessed without the need of fully decoding the compressed stream. This fact ensures a significant improvement in the performance of search and retrieval systems, such as for semantic browsing of image databases. Then, other potential benefits can be envisaged especially in the field of management and distribution of multimedia content, because the direct embedding of content metadata preserves the consistency between content stream and content description without the need of other external frameworks, such as MPEG-21. The paradigm proposed here may also be shifted to Multiple description coding, where different representations of the HDR image can be generated accordingly to its content. The advantages provided by the new proposed method are visible at different levels, i.e. when evaluating the redundancy reduction. Moreover, the descriptors extracted from the compressed data stream could be actively used in complex applications, such as fast retrieval of similar images from huge databases

Prioritizing Content of Interest in Multimedia Data Compression

Image and video compression techniques make data transmission and storage in digital multimedia systems more efficient and feasible for the system's limited storage and bandwidth. Many generic image and video compression techniques such as JPEG and H.264/AVC have been standardized and are now widely adopted. Despite their great success, we observe that these standard compression techniques are not the best solution for data compression in special types of multimedia systems such as microscopy videos and low-power wireless broadcast systems. In these application-specific systems where the content of interest in the multimedia data is known and well-defined, we should re-think the design of a data compression pipeline. We hypothesize that by identifying and prioritizing multimedia data's content of interest, new compression methods can be invented that are far more effective than standard techniques. In this dissertation, a set of new data compression methods based on the idea of prioritizing the content of interest has been proposed for three different kinds of multimedia systems. I will show that the key to designing efficient compression techniques in these three cases is to prioritize the content of interest in the data. The definition of the content of interest of multimedia data depends on the application. First, I show that for microscopy videos, the content of interest is defined as the spatial regions in the video frame with pixels that don't only contain noise. Keeping data in those regions with high quality and throwing out other information yields to a novel microscopy video compression technique. Second, I show that for a Bluetooth low energy beacon based system, practical multimedia data storage and transmission is possible by prioritizing content of interest. I designed custom image compression techniques that preserve edges in a binary image, or foreground regions of a color image of indoor or outdoor objects. Last, I present a new indoor Bluetooth low energy beacon based augmented reality system that integrates a 3D moving object compression method that prioritizes the content of interest.Doctor of Philosoph