In situ measurement of Scots pine needle PRI

Background: The Photochemical Reflectance Index (PRI) calculated from narrow-band spectral reflectance data is a vegetation index which is increasingly used as an indicator of photosynthetic activity. The leaf-level link between the status of photosynthetic apparatus and PRI has been robustly established under controlled light conditions. However, when a whole canopy is measured instantaneously, the PRI signal is heavily modified by vegetation structure and local variations in incident light conditions. To apply PRI for monitoring the photosynthesis of whole canopies under natural conditions, these large-scale measurements need to be validated against simultaneous leaf PRI. Unfortunately, PRI changes dynamically with incident light and has a large natural variation. No generally accepted procedure exists today for determining the PRI of canopy elements in situ. Results: We present a successful procedure for in situ measurements of needle PRI. We describe, characterize and test an optical measurement protocol and demonstrate its applicability in field conditions. The measurement apparatus consisted of a light source, needle clip, spectroradiometer and a controlling computer. The light level inside the clip was approximately two-thirds of that on sunlit needle surfaces at midday. During each measurement the needle was inserted into the clip for approximately 5 s. We found no near-instantaneous changes (sub-second scale jumps) in PRI during the measurements. The time constants for PRI variation in light to full shade acclimations were approximately 10 s. The procedure was successfully applied to monitor the greening-up of Scots pine trees. We detected both facultative (diurnal) PRI changes of 0.02 (unitless) and constitutive (seasonal) variations of 0.1. In order to reliably detect the facultative PRI change of 0.02, 20 needles need to be sampled from both sunlit and shaded locations. Conclusions: We established a robust procedure for irradiance-dependent leaf (needle) PRI measurements, facilitating empirical scaling of PRI from leaf (needle) to full canopy level and the application of PRI to monitoring the changes in highly structured vegetation. The measured time constants, and facultative and constitutive PRI variations support the use of an artificial light for in situ PRI measurements at leaf (needle) level.Peer reviewe

In situ measurement of Scots pine needle PRI

Abstract Background The Photochemical Reflectance Index (PRI) calculated from narrow-band spectral reflectance data is a vegetation index which is increasingly used as an indicator of photosynthetic activity. The leaf-level link between the status of photosynthetic apparatus and PRI has been robustly established under controlled light conditions. However, when a whole canopy is measured instantaneously, the PRI signal is heavily modified by vegetation structure and local variations in incident light conditions. To apply PRI for monitoring the photosynthesis of whole canopies under natural conditions, these large-scale measurements need to be validated against simultaneous leaf PRI. Unfortunately, PRI changes dynamically with incident light and has a large natural variation. No generally accepted procedure exists today for determining the PRI of canopy elements in situ. Results We present a successful procedure for in situ measurements of needle PRI. We describe, characterize and test an optical measurement protocol and demonstrate its applicability in field conditions. The measurement apparatus consisted of a light source, needle clip, spectroradiometer and a controlling computer. The light level inside the clip was approximately two-thirds of that on sunlit needle surfaces at midday. During each measurement the needle was inserted into the clip for approximately 5 s. We found no near-instantaneous changes (sub-second scale jumps) in PRI during the measurements. The time constants for PRI variation in light to full shade acclimations were approximately 10 s. The procedure was successfully applied to monitor the greening-up of Scots pine trees. We detected both facultative (diurnal) PRI changes of 0.02 (unitless) and constitutive (seasonal) variations of 0.1. In order to reliably detect the facultative PRI change of 0.02, 20 needles need to be sampled from both sunlit and shaded locations. Conclusions We established a robust procedure for irradiance-dependent leaf (needle) PRI measurements, facilitating empirical scaling of PRI from leaf (needle) to full canopy level and the application of PRI to monitoring the changes in highly structured vegetation. The measured time constants, and facultative and constitutive PRI variations support the use of an artificial light for in situ PRI measurements at leaf (needle) level

Assessing ecosystem isoprene emissions by hyperspectral remote sensing

This study examined the relationship between foliar isoprene emissions, light use efficiency and photochemical reflectance index (PRI) throughout the canopy profile and explored the contribution of xanthophyll cycle pigments versus other carotenoid pigments to the isoprene/PRI relationship. Foliar isoprene emissions within the canopy profile were measured in a high-density poplar plantation in Flanders (Belgium) during the 2016 growing season. The results confirmed that PRI was a promising estimator of isoprene emissions at canopy level. Interestingly, xanthophyll cycle pigments contributed more to isoprene biosynthesis than chlorophyll and drove the isoprene/PRI relationship. The simple independent pigment index and novel defined indices, such as the hyperspectral isoprene index and simple hyperspectral isoprene index, showed promising results and could be suitable estimators of isoprene emissions due to their strong relationship with the xanthophyll pool

Progress in Remote Sensing of Photosynthetic Activity over the Amazon Basin

Although quantifying the massive exchange of carbon that takes place over the Amazon Basin remains a challenge, progress is being made as the remote sensing community moves from using traditional, reflectance-based vegetation indices, such as the Normalized Difference Vegetation Index (NDVI), to the more functional Photochemical Reflectance Index (PRI). This new index, together with satellite-derived estimates of canopy light interception and Sun-Induced Fluorescence (SIF), provide improved estimates of Gross Primary Production (GPP). This paper traces the development of these new approaches, compares the results of their analyses from multiple years of data acquired across the Amazon Basin and suggests further improvements in instrument design, data acquisition and processing. We demonstrated that our estimates of PRI are in generally good agreement with eddy-flux tower measurements of photosynthetic light use efficiency (epsilon) at four sites in the Amazon Basin: r(exp 2) values ranged from 0.37 to 0.51 for northern flux sites and to 0.78for southern flux sites. This is a significant advance over previous approaches seeking to establish a link between global-scale photosynthetic activity and remotely-sensed data. When combined with measurements of Sun-Induced Fluorescence (SIF), PRI provides realistic estimates of seasonal variation in photosynthesis over the Amazon that relate well to the wet and dry seasons. We anticipate that our findings will steer the development of improved approaches to estimate photosynthetic activity over the tropics

Assessment of the response of photosynthetic activity of Mediterranean evergreen oaks to enhanced drought stress and recovery by using PRI and R690/R630

Agraïments: Chao Zhang gratefully acknowledges the support from the Chinese Scholarship Council.The photochemical reflectance index (PRI) and red-edge region of the spectrum are known to be sensitive to plant physiological processes, and through measurement of these optical signals it is possible to use non-invasive remote sensing to monitor the plant photosynthetic status in response to environmental stresses such as drought. We conducted a greenhouse experiment using Quercus ilex, a Mediterranean evergreen oak species, to investigate the links between leaf-level PRI and the red-edge based reflectance ratio (R690/R630) with CO2 assimilation rates (A), and photochemical efficiency (FV/FM and Yield) in response to a gradient of mild to extreme drought treatments (nine progressively enhanced drought levels) and corresponding recovery. PRI and R690/R630 both decreased under enhanced drought stress, and had significant correlations with A, FV/FM and Yield. The differential values between recovery and drought treatments of PRI (DPRIrecovery) and R690/R630 (DR690/R630recovery) increased with the enhanced drought levels, and significantly correlated with the increases of DArecovery, DFV/FMrecovery and DYieldrecovery. We concluded that both PRI and R690/R630 were not only sensitive to enhanced drought stresses, but also highly sensitive to photosynthetic recovery. Our study makes important progress for remotely monitoring the effect of drought and recovery on photosynthetic regulation using the simple physiological indices of PRI and R690/R630

A MODIS photochemical reflectance index (PRI) as an estimator of isoprene emissions in a temperate deciduous forest

The quantification of isoprene and monoterpene emissions at the ecosystem level with available models and field measurements is not entirely satisfactory. Remote-sensing techniques can extend the spatial and temporal assessment of isoprenoid fluxes. Detecting the exchange of biogenic volatile organic compounds (BVOCs) using these techniques is, however, a very challenging goal. Recent evidence suggests that a simple remotely sensed index, the photochemical reflectance index (PRI), which is indicative of light-use efficiency, relative pigment levels and excess reducing power, is a good indirect estimator of foliar isoprenoid emissions. We tested the ability of PRI to assess isoprenoid fluxes in a temperate deciduous forest in central USA throughout the entire growing season and under moderate and extreme drought conditions. We compared PRI time series calculated with MODIS bands to isoprene emissions measured with eddy covariance. MODIS PRI was correlated with isoprene emissions for most of the season, until emissions peaked. MODIS PRI was also able to detect the timing of the annual peak of emissions, even when it was advanced in response to drought conditions. PRI is thus a promising index to estimate isoprene emissions when it is complemented by information on potential emission. It may also be used to further improve models of isoprene emission under drought and other stress conditions. Direct estimation of isoprene emission by PRI is, however, limited, because PRI estimates LUE, and the relationship between LUE and isoprene emissions can be modified by severe stress conditions

Robotics-based vineyard water potential monitoring at high resolution

[EN] The purpose of this research is deploying a proximal sensing solution using non-invasive and cost-effective sensors onboard an Autonomous Ground Vehicle (AGV) as a feasible way for building high-resolution maps of water potential in vineyards. The final objective is offering growers a practical system to make decisions about water management, especially for arid climatic conditions. The monitoring AGV was entirely developed within this research context, and as a result, it is a machine specifically designed to endure off-road conditions and harsh environments. The autonomous vehicle served as a massive, non-invasive, and on-the-go data collector robotic platform. The sensors used for measuring the relevant field variables were two spectral reflectance sensors (SRS), an infrared radiometer, and an on-board weather sensor. The collected data were displayed on comprehensible grid maps using the Local Tangent Plane (LTP) coordinate system. The proposed model has a coefficient of determination R-2 of 0.69, and results from combining six parameters: the canopy and air temperatures (as the temperature difference), the relative humidity, the altitude difference, the Normalized Difference Vegetation Index (NDVI), and the Photochemical Reflectance Index (PRI). The strongest relationships found in this study were between the temperature difference and PRI, with an R-2 of 0.75, and the temperature difference with the leaf water potential with an R-2 of 0.61. The practical use of these high-resolution maps includes irrigation scheduling and harvest zoning for sorting grape quality, with a further use as inputs to complex artificial intelligence algorithms considering larger areas or complementing airborne data. Future improvements to make the models more robust and versatile will entail considering additional variables, locations, or grapevine cultivars, and even other crops grown in vertical trellis systems.This work has been developed under grant agreement N¿737669 of the European Union¿s Horizon 2020 research and innovation program, and it has received the support of Symington Family States owners and technicians, whose assistance is deeply appreciated. In particular, the Symington family (Dominic, John, and Charles), and staff members Joana Valente, Artur Moreira, and Pedro Leal da Costa. Likewise, Juan José Peña Suárez and Montano Pérez Teruel from the Universitat Politècnica de València in Spain are greatly thanked for their continuous support. This work was supported by the European Union's Horizon 2020 research and innovation programme (grant agreement number 737669) . The opinions expressed reflect only the authors' view. Neither the European Commission, nor the funding agency, nor its services are responsible for any use that may be made of the information that this publication contains.Saiz-Rubio, V.; Rovira Más, F.; Cuenca-Cuenca, A.; Alves, F. (2021). Robotics-based vineyard water potential monitoring at high resolution. Computers and Electronics in Agriculture. 187:1-12. https://doi.org/10.1016/j.compag.2021.10631111218

Photochemical reflectance index (PRI) for detecting responses of diurnal and seasonal photosynthetic activity to experimental drought and warming in a Mediterranean shrubland

Climatic warming and drying are having profound impacts on terrestrial carbon cycling by altering plant physiological traits and photosynthetic processes, particularly for species in the semi-arid Mediterranean ecosystems. More effective methods of remote sensing are needed to accurately assess the physiological responses and seasonal photosynthetic activities of evergreen species to climate change. We evaluated the stand reflectance in parallel to the diurnal and seasonal changes in gas exchange, fluorescence and water contents of leaves and soil for a Mediterranean evergreen shrub, Erica multiflora, submitted to long-term experimental warming and drought. We also calculated a differential photochemical reflectance index (DPRI, morning PRI subtracted from midday PRI) to assess the diurnal responses of photosynthesis (DA) to warming and drought. The results indicated that the PRI, but not the normalized difference vegetation index (NDVI), was able to assess the seasonal changes of photosynthesis. Changes in water index (WI) were consistent with seasonal foliar water content (WC). In the warming treatment, DA value was higher than control in winter but DYield was significantly lower in both summer and autumn, demonstrating the positive effect of the warming on the photosynthesis in winter and the negative effect in summer and autumn, i.e., increased photosynthetic midday depression in summer and autumn, when temperatures were much higher than in winter. Drought treatment increased the midday depression of photosynthesis in summer. Importantly, DPRI was significantly correlated with DA both under warming and drought, indicating the applicability of DPRI for tracking the midday depression of photosynthetic processes. Using PRI and DPRI to monitor the variability in photosynthesis could provide a simple method to remotely sense photosynthetic seasonality and midday depression in response to ongoing and future environmental stresses

Proximal hyperspectral imaging detects diurnal and drought-induced changes in maize physiology

Hyperspectral imaging is a promising tool for non-destructive phenotyping of plant physiological traits, which has been transferred from remote to proximal sensing applications, and from manual laboratory setups to automated plant phenotyping platforms. Due to the higher resolution in proximal sensing, illumination variation and plant geometry result in increased non-biological variation in plant spectra that may mask subtle biological differences. Here, a better understanding of spectral measurements for proximal sensing and their application to study drought, developmental and diurnal responses was acquired in a drought case study of maize grown in a greenhouse phenotyping platform with a hyperspectral imaging setup. The use of brightness classification to reduce the illumination-induced non-biological variation is demonstrated, and allowed the detection of diurnal, developmental and early drought-induced changes in maize reflectance and physiology. Diurnal changes in transpiration rate and vapor pressure deficit were significantly correlated with red and red-edge reflectance. Drought-induced changes in effective quantum yield and water potential were accurately predicted using partial least squares regression and the newly developed Water Potential Index 2, respectively. The prediction accuracy of hyperspectral indices and partial least squares regression were similar, as long as a strong relationship between the physiological trait and reflectance was present. This demonstrates that current hyperspectral processing approaches can be used in automated plant phenotyping platforms to monitor physiological traits with a high temporal resolution

Affecting factors and recent improvements of the photochemical reflectance index (PRI) for remotely sensing foliar, canopy and ecosystemic radiation-use efficiencies

Accurately assessing terrestrial gross primary productivity (GPP) is crucial for characterizing the climate-carbon cycle. Remotely sensing the photochemical reflectance index (PRI) across vegetation functional types and spatiotemporal scales has received increasing attention for monitoring photosynthetic performance and simulating GPP over the last two decades. The factors confounding PRI variation, especially on long timescales, however, require the improvement of PRI understanding to generalize its use for estimating carbon uptake. In this review, we summarize the most recent publications that have reported the factors affecting PRI variation across diürnal and seasonal scales at foliar, canopy and ecosystemic levels; synthesize the reported correlations between PRI and ecophysiological variables, particularly with radiation-use efficiency (RUE) and net carbon uptake; and analyze the improvements in PRI implementation. Long-term variation of PRI could be attributed to changes in the size of constitutive pigment pools instead of xanthophyll de-epoxidation, which controls the facultative short-term changes in PRI. Structural changes at canopy and ecosystemic levels can also affect PRI variation. Our review of the scientific literature on PRI suggests that PRI is a good proxy of photosynthetic efficiency at different spatial and temporal scales. Correcting PRI by decreasing the influence of physical or physiological factors on PRI greatly strengthens the relationships between PRI and RUE and GPP. Combining PRI with solar-induced fluorescence (SIF) and optical indices for green biomass offers additional prospects