CaloMan: Fast generation of calorimeter showers with density estimation on learned manifolds

Precision measurements and new physics searches at the Large Hadron Collider require efficient simulations of particle propagation and interactions within the detectors. The most computationally expensive simulations involve calorimeter showers. Advances in deep generative modelling - particularly in the realm of high-dimensional data - have opened the possibility of generating realistic calorimeter showers orders of magnitude more quickly than physics-based simulation. However, the high-dimensional representation of showers belies the relative simplicity and structure of the underlying physical laws. This phenomenon is yet another example of the manifold hypothesis from machine learning, which states that high-dimensional data is supported on low-dimensional manifolds. We thus propose modelling calorimeter showers first by learning their manifold structure, and then estimating the density of data across this manifold. Learning manifold structure reduces the dimensionality of the data, which enables fast training and generation when compared with competing methods.Comment: Accepted to the Machine Learning and the Physical Sciences Workshop at NeurIPS 202

Actividades recreativas y conservación en Áreas Naturales Protegidas en el centro de México: un enfoque desde los Socioecosistemas

La Dra. Tizbe Teresa Arteaga Reyes participó: (i) como corresponsable del proyecto de investigación Parque Nacional Nevado de Toluca: un laboratorio socio-ambiental en la innovación de políticas para la gestión de parques nacionales, en el marco del Convenio Bilateral México-Francia, financiado por el CONACYT; (ii) en la dirección de la tesis (Tutora Académica) de Doctorado en Ciencias Agropecuarias y Recursos Naturales de la C. Nadinne Ivette González Romero; y (iii) en la redacción de este artículo científico como autora por correspondencia, resultado del proyecto de investigación y la dirección de tesis doctoral.The Protected Area of Flora and Fauna Nevado de Toluca (APFFNT) does not consider the double mandate to reduce conflicts between use and protection of Natural Protected Areas (NPAs), which requires integrating the socio-ecosystems approach. The objective of the present study was to analyze the recreational activity in three socio-ecological units within the socio-ecosystem APFFNT, in order to understand the interaction and compatibility between recreation and conservation in NPAs. From a literature review, direct observation, field trips and semi-structured interviews, it was observed that within the management of the three socio-ecological units, conservation actions and recreational activities coexist that are developed in social and ecologically fragile and complex contexts; however, these activities have not been carried out in a formal way, due to the limited synergies between actors and to failures in the application and enforcement of existing regulation. The socio-ecosystem approach allows to analyze recreational activities and the visualization of dynamics, temporality and complexity of the interactions of socio-ecosystem components to implement management and governance alternatives that contribute to preventing and reducing conservation-management-environmental degradation conflicts.Al Consejo Nacional de Ciencia y Tecnología (CONACYT) por el financiamiento para: (i) el Doctorado en Ciencias Agropecuarias y Recursos Naturales de la Mtra. González Romero y (ii) el proyecto de investigación Parque Nacional Nevado de Toluca: un laboratorio socio-ambiental en la innovación de políticas para la gestión de parques nacionales, en el marco del Convenio Bilateral México-Francia

Buenas Prácticas de Manufactura en comedores del Mercado Central de Abasto de Asunción, Paraguay

Las Buenas Prácticas de Manufactura (BPM) constituyen un “conjunto de principios y recomendaciones técnicas que se aplican durante el procesamiento de los alimentos para garantizar su inocuidad y su aptitud” y son de obligado cumplimiento. El sándwich de verdura es de alto riesgo, utiliza materias primas crudas y mayonesa, no sufre cocción y es de consumo masivo. El objetivo fue describir las BPM en comedores del Mercado Central de Abasto de Asunción, Paraguay que producen sándwiches de verduras. Estudio prospectivo, descriptivo, transversal, de muestreo por conveniencia. Se incluyeron 50 comedores del Mercado Central de Abasto que producen sándwiches de verduras y accedieron a participar del estudio. La evaluación fue con una lista de verificación basada en el Codex Alimentarius (FAO/OMS). El 60% no presentó buena estructura edilicia, y en el 32% de los comedores se observaron animales o vectores. El 54% poseía basureros cerca de los alimentos, 46% con tapa. El 42% no adquiría la materia prima de proveedores autorizados, y 30% utilizaba agua reciclada. El 10% no lavaba los productos de ninguna forma, el 86% de los manipuladores refirió lavarse las manos antes y el 88% después de manipular los alimentos. El 82% tenía el pelo recogido y uñas limpias y cortas, y el 46% utilizaba accesorios (anillos, relojes y pulseras). En el 42% la misma persona manipulaba los alimentos y cobraba. El 20% recibió capacitación y el 43% fue inspeccionado por la Municipalidad de Asunción. Los establecimientos que procesan alimentos deben implementar las BPM para reducir riesgos

La vid silvestre en México. Actualidades y potencial

En ocho capítulos se aborda el estado del arte de la vid silvestre en MéxicoEl estudio de las especies vegetales nativas de México representa un reto que cada día más investigadores mexicanos asumen. Durante muchos años, el apoyo a la investigación pública ha sido mínimo; desde el punto de vista agronómico es insuficiente para avanzar a la velocidad que requiere nuestro país para afrontar problemas de producción y distribución de alimentos. Por esa razón, entre otras, me es grato presentar esta obra que compila parte de los trabajos de la Red de Vid Silvestre patrocinada por el Sistema Nacional de Recursos Fitogenéticos (sinarefi) dependiente de la sagarpa; trabajos apuntalados por investigadores que sin pertenecer a la red han colaborado en el estudio de las plantas del género Vitis. En este libro se muestra el potencial del país para aprovechar el recurso vid, empleado desde antes de la conquista española por nativos mexicanos que conocían sus bondades. Es necesario continuar el avance en el conocimiento de este recurso, por ello el presente libro pretende invitar a toda persona interesada en contribuir con el rescate y conservación de las vides mexicanas. Los autores y editores, así como las instituciones en donde laboramos y aquellas que patrocinan estas investigaciones, esperamos se cumpla este objetivo y que el lector, alumno, profesor, investigador, público en general, disfrute esta lectura y, sobre todo, se interese en el recurso VitisSEP, SINAREFI, UAEME

Estado del arte del proyecto

Es un proyecto de investigación en el aula, desarrollado por docentes del programa de arquitectura de la Universidad de la Costa con sede en Barranquilla, Colombia. En este se pueden constatar metodologías de enseñanza- aprendizaje diseñadas para cada caso y que representan la impronta personal de cada autor. Es importante resaltar, que todos los argumentos presentados en esta obra corresponden a experiencias diseñadas para asignaturas de las áreas de Diseño, representación y comunicación de proyectos, historia y teoría y Urbanismo. Una experiencia en la que docentes y estudiantes, configuran una vivencia, en el marco de una asignatura que sirve de referencia y aprendizaje en el ejercicio académic

The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium

[EN] Fruits and seeds are the major food source on earth. Both derive from the gynoecium and, therefore, it is crucial to understand the mechanisms that guide the development of this organ of angiosperm species. In Arabidopsis, the gynoecium is composed of two congenitally fused carpels, where two domains: medial and lateral, can be distinguished. The medial domain includes the carpel margin meristem (CMM) that is key for the production of the internal tissues involved in fertilization, such as septum, ovules, and transmitting tract. Interestingly, the medial domain shows a high cytokinin signaling output, in contrast to the lateral domain, where it is hardly detected. While it is known that cytokinin provides meristematic properties, understanding on the mechanisms that underlie the cytokinin signaling pattern in the young gynoecium is lacking. Moreover, in other tissues, the cytokinin pathway is often connected to the auxin pathway, but we also lack knowledge about these connections in the young gynoecium. Our results reveal that cytokinin signaling, that can provide meristematic properties required for CMM activity and growth, is enabled by the transcription factor SPATULA (SPT) in the medial domain. Meanwhile, cytokinin signaling is confined to the medial domain by the cytokinin response repressor ARABIDOPSIS HISTIDINE PHOSPHOTRANSFERASE 6 (AHP6), and perhaps by ARR16 (a type-A ARR) as well, both present in the lateral domains (presumptive valves) of the developing gynoecia. Moreover, SPT and cytokinin, probably together, promote the expression of the auxin biosynthetic gene TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1 (TAA1) and the gene encoding the auxin efflux transporter PIN-FORMED 3 (PIN3), likely creating auxin drainage important for gynoecium growth. This study provides novel insights in the spatiotemporal determination of the cytokinin signaling pattern and its connection to the auxin pathway in the young gynoecium.IRO, VMZM, HHU and PLS were supported by the Mexican National Council of Science and Technology (CONACyT) with a PhD fellowship (210085, 210100, 243380 and 219883, respectively). Work in the SDF laboratory was financed by the CONACyT grants CB-2012-177739, FC-2015-2/1061, and INFR-2015-253504, and NMM by the CONACyT grant CB-2011-165986. SDF, CF and LC acknowledge the support of the European Union FP7-PEOPLE-2009-IRSES project EVOCODE (grant no. 247587) and H2020-MSCARISE-2015 project ExpoSEED (grant no. 691109). SDF also acknowledges the Marine Biological Laboratory (MBL) in Woods Hole for a scholarship for the Gene Regulatory Networks for Development Course 2015 (GERN2015). IE acknowledges the International European Fellowship-METMADS project and the Universita degli Studi di Milano (RTD-A; 2016). Research in the laboratory of MFY was funded by NSF (grant IOS-1121055), NIH (grant 1R01GM112976-01A1) and the Paul D. Saltman Endowed Chair in Science Education (MFY). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Reyes Olalde, J.; Zuñiga, V.; Serwatowska, J.; Chávez Montes, R.; Lozano-Sotomayor, P.; Herrera-Ubaldo, H.; Gonzalez Aguilera, K.... (2017). The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium. PLoS Genetics. 13(4):1-31. https://doi.org/10.1371/journal.pgen.1006726S131134Reyes-Olalde, J. I., Zuñiga-Mayo, V. M., Chávez Montes, R. A., Marsch-Martínez, N., & de Folter, S. (2013). Inside the gynoecium: at the carpel margin. Trends in Plant Science, 18(11), 644-655. doi:10.1016/j.tplants.2013.08.002Alvarez-Buylla, E. 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Estudios de Caso sobre Ciencias Agropecuarias y Rurales en el siglo XXI.

Libro científico sobre estudios de casos en el medio agropecuario y ruralCon el advenimiento del siglo XXI y el avance de los procesos de globalización, el medio rural presenta diversos cambios económicos, sociales, políticos y culturales. Lo anterior significa que el campo es un objeto de estudio altamente dinámico, complejo e inasible. las ciencias agropecuarias y rurales, en la actualidad, requieren de un abordaje sistémico e interdisciplinario que den cuenta de la heterogeneidad de situaciones y contextos que enfrenta el campo mexicano. La presente obra agrupa 18 estudios de caso, que capturan algunas fotografías de las diversas problemáticas de la ruralidad mexicana, con lo cual se pretende dar cuenta tanto de los objetivos de estudio como de la perspectiva teórico metodológico desde que estos son abordados. lo anterior tiene que ver con el hecho de que las ciencias agropecuarias y rurales manifiestan un alto grado de observación empírica, motivo por el que los estudios de caso se convierten en la perspectiva metodológica idónea que permite ir y venir de la realidad a la teoría y viceversa para la construcción de objetos de estudio. En este volumen se aborda una gran diversidad de casos, que sintetizan la heterogeneidad de enfoques y perspectivas mediante las cuales los fenómenos agropecuarios y rurales han sido abordados en el Instituto de Ciencias Agropecuarias y Rurales de la Universidad Autónoma del Estado de México, en los últimos 30 años

Study protocol for the multicentre cohorts of Zika virus infection in pregnant women, infants, and acute clinical cases in Latin America and the Caribbean: The ZIKAlliance consortium

Background: The European Commission (EC) Horizon 2020 (H2020)-funded ZIKAlliance Consortium designed a multicentre study including pregnant women (PW), children (CH) and natural history (NH) cohorts. Clinical sites were selected over a wide geographic range within Latin America and the Caribbean, taking into account the dynamic course of the ZIKV epidemic. Methods: Recruitment to the PW cohort will take place in antenatal care clinics. PW will be enrolled regardless of symptoms and followed over the course of pregnancy, approximately every 4 weeks. PW will be revisited at delivery (or after miscarriage/abortion) to assess birth outcomes, including microcephaly and other congenital abnormalities according to the evolving definition of congenital Zika syndrome (CZS). After birth, children will be followed for 2 years in the CH cohort. Follow-up visits are scheduled at ages 1-3, 4-6, 12, and 24 months to assess neurocognitive and developmental milestones. In addition, a NH cohort for the characterization of symptomatic rash/fever illness was designed, including follow-up to capture persisting health problems. Blood, urine, and other biological materials will be collected, and tested for ZIKV and other relevant arboviral diseases (dengue, chikungunya, yellow fever) using RT-PCR or serological methods. A virtual, decentralized biobank will be created. Reciprocal clinical monitoring has been established between partner sites. Substudies of ZIKV seroprevalence, transmissio

Familial hypercholesterolaemia in children and adolescents from 48 countries: a cross-sectional study

Background: Approximately 450 000 children are born with familial hypercholesterolaemia worldwide every year, yet only 2·1% of adults with familial hypercholesterolaemia were diagnosed before age 18 years via current diagnostic approaches, which are derived from observations in adults. We aimed to characterise children and adolescents with heterozygous familial hypercholesterolaemia (HeFH) and understand current approaches to the identification and management of familial hypercholesterolaemia to inform future public health strategies. Methods: For this cross-sectional study, we assessed children and adolescents younger than 18 years with a clinical or genetic diagnosis of HeFH at the time of entry into the Familial Hypercholesterolaemia Studies Collaboration (FHSC) registry between Oct 1, 2015, and Jan 31, 2021. Data in the registry were collected from 55 regional or national registries in 48 countries. Diagnoses relying on self-reported history of familial hypercholesterolaemia and suspected secondary hypercholesterolaemia were excluded from the registry; people with untreated LDL cholesterol (LDL-C) of at least 13·0 mmol/L were excluded from this study. Data were assessed overall and by WHO region, World Bank country income status, age, diagnostic criteria, and index-case status. The main outcome of this study was to assess current identification and management of children and adolescents with familial hypercholesterolaemia. Findings: Of 63 093 individuals in the FHSC registry, 11 848 (18·8%) were children or adolescents younger than 18 years with HeFH and were included in this study; 5756 (50·2%) of 11 476 included individuals were female and 5720 (49·8%) were male. Sex data were missing for 372 (3·1%) of 11 848 individuals. Median age at registry entry was 9·6 years (IQR 5·8-13·2). 10 099 (89·9%) of 11 235 included individuals had a final genetically confirmed diagnosis of familial hypercholesterolaemia and 1136 (10·1%) had a clinical diagnosis. Genetically confirmed diagnosis data or clinical diagnosis data were missing for 613 (5·2%) of 11 848 individuals. Genetic diagnosis was more common in children and adolescents from high-income countries (9427 [92·4%] of 10 202) than in children and adolescents from non-high-income countries (199 [48·0%] of 415). 3414 (31·6%) of 10 804 children or adolescents were index cases. Familial-hypercholesterolaemia-related physical signs, cardiovascular risk factors, and cardiovascular disease were uncommon, but were more common in non-high-income countries. 7557 (72·4%) of 10 428 included children or adolescents were not taking lipid-lowering medication (LLM) and had a median LDL-C of 5·00 mmol/L (IQR 4·05-6·08). Compared with genetic diagnosis, the use of unadapted clinical criteria intended for use in adults and reliant on more extreme phenotypes could result in 50-75% of children and adolescents with familial hypercholesterolaemia not being identified. Interpretation: Clinical characteristics observed in adults with familial hypercholesterolaemia are uncommon in children and adolescents with familial hypercholesterolaemia, hence detection in this age group relies on measurement of LDL-C and genetic confirmation. Where genetic testing is unavailable, increased availability and use of LDL-C measurements in the first few years of life could help reduce the current gap between prevalence and detection, enabling increased use of combination LLM to reach recommended LDL-C targets early in life