GlobTherm, a global database on thermal tolerances for aquatic and terrestrial organisms

This database includes thermal tolerance metrics for 2,133 species of multicellular algae, plants, fungi, and animals in 43 classes, 203 orders and 525 families from both aquatic, and terrestrial realms, extracted from published studies. Abbreviated citations are included in the 'REF_min' and 'REF_max' variable in the data file. For full citations, please see the attached workbook, "References_1_09_2017.xlsx". The data are available in both Excel and CSV formats in the Dryad Digital Repository (doi:10.5061/dryad.1cv08). Updates to the data and metadata will be curated through the iDiv data portal (https://idata.idiv.de/). For example, in the future we plan to include interspecific variation in the dataset, to provide multiple estimates of thermal tolerance limits for a given species where estimates determined using the best possible methods will be more highly ranked

Coefficient shifts in geographical ecology: an empirical evaluation of spatial and non-spatial regression

Copyright © 2009 The Authors. Copyright © ECOGRAPHY 2009.A major focus of geographical ecology and macro ecology is to understand the causes of spatially structured ecological patterns. However, achieving this understanding can be complicated when using multiple regressions, because the relative importance of explanatory variables, as measured by regression coefficients, can shift depending on whether spatially explicit or non-spatial modelling is used. However, the extent to which coefficients may shift and why shifts occur are unclear. Here, we analyze the relationship between environmental predictors and the geographical distribution of species richness, body size, range size and abundance in 97 multi-factorial data sets. Our goal was to compare standardized partial regression coefficients of non-spatial ordinary least squares regressions (i.e. models fitted using ordinary least squares without taking autocorrelation into account; “OLS models” hereafter) and eight spatial methods to evaluate the frequency of coefficient shifts and identify characteristics of data that might predict when shifts are likely. We generated three metrics of coefficient shifts and eight characteristics of the data sets as predictors of shifts. Typical of ecological data, spatial autocorrelation in the residuals of OLS models was found in most data sets. The spatial models varied in the extent to which they minimized residual spatial autocorrelation. Patterns of coefficient shifts also varied among methods and datasets, although the magnitudes of shifts tended to be small in all cases. We were unable to identify strong predictors of shifts, including the levels of autocorrelation in either explanatory variables or model residuals. Thus, changes in coefficients between spatial and non-spatial methods depend on the method used and are largely idiosyncratic, making it difficult to predict when or why shifts occur. We conclude that the ecological importance of regression coefficients cannot be evaluated with confidence irrespective of whether spatially explicit modelling is used or not. Researchers may have little choice but to be more explicit about the uncertainty of models and more cautious in their interpretation

Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks : The GR@ACE project

Introduction: Large variability among Alzheimer's disease (AD) cases might impact genetic discoveries and complicate dissection of underlying biological pathways. Methods: Genome Research at Fundacio ACE (GR@ACE) is a genome-wide study of dementia and its clinical endophenotypes, defined based on AD's clinical certainty and vascular burden. We assessed the impact of known AD loci across endophenotypes to generate loci categories. We incorporated gene coexpression data and conducted pathway analysis per category. Finally, to evaluate the effect of heterogeneity in genetic studies, GR@ACE series were meta-analyzed with additional genome-wide association study data sets. Results: We classified known AD loci into three categories, which might reflect the disease clinical heterogeneity. Vascular processes were only detected as a causal mechanism in probable AD. The meta-analysis strategy revealed the ANKRD31-rs4704171 and NDUFAF6-rs10098778 and confirmed SCIMP-rs7225151 and CD33-rs3865444. Discussion: The regulation of vasculature is a prominent causal component of probable AD. GR@ACE meta-analysis revealed novel AD genetic signals, strongly driven by the presence of clinical heterogeneity in the AD series

Data from: Geographic variation of body size in new world anurans: energy and water in a balance

The validity of Bergmann's rule, perhaps the best known ecogeographical rule, has been questioned for ectothermic species. Here, we explore the interspecific version of the rule documenting body size gradients for anurans across the whole New World and evaluating which environmental variables best explain the observed patterns. We assembled a dataset of body sizes for 2761 anuran species of the Western Hemisphere and conducted assemblage-based and cross-species analyses that consider the spatial and phylogenetic structure in the data. In accordance with heat and water-related explanations for body size clines, we found a consistent association of median body size and potential evapotranspiration across the New World. A relevant role of water availability also emerges, suggesting the joint importance of body size for thermoregulation and hydroregulation in anurans. Anurans do not follow a simple Bergmannian pattern of increasing size towards high latitudes. Consistent with previous regional findings, our Hemisphere-wide analyses detect that the geographic variation in anuran body sizes is highly dependent on a trade-off between heat and water balance. The observed size-climate relationships possibly emerge from the interplay between thermoregulatory abilities and the benefits inherent to reduced surface-to-volume ratios in larger species, which decrease the rates of evaporative water loss and favour heat retention. Our results also show how temperature becomes important for species that are directly in contact with the substrate and water, like burrowing and terrestrial anurans, while arboreal species exhibit a body size cline linked with potential evapotranspiration

Illegal logging, landscape structure and the variation of tree species richness across North Andean forest remnants.

Peer reviewe

Predicted impact of climate change on threatened terrestrial vertebrates in central Spain highlights differences between endotherms and ectotherms

Climate change can induce shifts in species ranges. Of special interest are range shifts in regions with a conflict of interest between land use and the conservation of threatened species. Here we focus on the 94 threatened terrestrial vertebrates occurring in the Madrid region (Central Spain) and model their distributions using data for the whole peninsular Spain to evaluate which vertebrate groups are likely to be more sensitive to climatic change. First, we generated predictive models to quantify the extent to which species distributions are explained by current climate. We then extrapolated the models temporally to predict the effects of two climate-change scenarios on species distributions. We also examined the impact on a recently proposed reserve relative to other interconnected zones with lower protection status but categorized as Areas of Community Importance by the European Union. The variation explained by climatic predictors was greater in ectotherms. The change in species composition differed between the proposed reserve and the other protected areas. Endothermic and ectothermic vertebrates had different patterns of changes in species composition but those of ectotherms matched with temperature departures predicted by climate change. Our results, together with the limited dispersal capacity of herptiles, suggest that trade-offs between different design criteria accounting for animal group differences are necessary for reserve selection.Financial support was provided to P.A. by the Comunidad de Madrid (GR/AMB/0920/2004) and by an I3P-PC2005L postdoctoral contract, by the Spanish Ministry of Science and Innovation (CGL2006-03000/BOS to M.Á.R., CGL2006-10196 to J.M.L and AP2005-0636 to M.Á.O.-T.), and by an FP7 Marie Curie Intra-European Fellowship (PHYLONICHE) from the European Commission to M.Á.O.-T.Peer reviewe

The contribution of contemporary climate to ectothermic and endothermic vertebrate distributions in a glacial refuge

10 páginas, 3 figuras, 1 tabla.Aim: Climatic factors are known to influence species distributions. However, elucidating the underlying mechanisms is challenging because direct and indirect effects of climatic and non-climatic factors are correlated. In the absence of this covariation and at fine-grain resolutions the direct effect of climate via physiological constraints should be stronger on the distributions of ectothermic organisms. So far, no comprehensive study has explicitly tested the influence of climate on species distributions by quantitatively comparing ectothermic and endothermic vertebrates. Location: Peninsular Spain. Methods: Presence–absence data of native terrestrial vertebrates in Peninsular Spain were modelled using generalized additive models to disentangle the influence of climate and other contemporary correlated factors (topography and plant cover). We performed partial regressions to partition the deviance explained by climatic and non-climatic effects into independent and shared components. We compared the independent contributions of climatic and non-climatic effects between ectothermic and endothermic vertebrates, and among mammals, birds, reptiles and amphibians. Results: After reducing the covariation with non-climatic factors, climate explained a greater proportion of deviance in ectotherms than in endotherms. Also, the contribution of temperature was highest for reptiles, and the contribution of precipitation was highest for amphibians, after extracting their overlaps with precipitation and temperature, respectively. The contribution of topography and plant cover remained high for birds after extracting the overlap with climate. Main conclusions: Our results are consistent with the prediction that, at fine resolutions, the direct influence of climate (via physiological constraints) on range distributions is stronger in ectothermic vertebrates. Also, at least for birds, indirect effects of climate (via plant productivity) and other habitat characteristics remained relatively important once their covariation with climate was reduced. This study shows that controlling the direct effects of climate by their indirect effects and/or other correlated factors, combined with comparisons among functional groups, can be a useful approach to elucidate causal links with the spatial patterns of organisms.Financial support was provided by an I3P-PC2005L post-doctoral contract to P.A., by the Spanish Ministry of Science and Innovation (CGL2006-03000/BOS) to M.Á.R., and by a FPU fellowship AP2005-0636 to M.Á.O.-T.Peer reviewe

Data from: The imprint of Cenozoic migrations and evolutionary history on the biogeographic gradient of body size in New World mammals

Ecology, evolution and historical events all contribute to biogeographic patterns, but studies integrating them are scarce. Here we focus on how biotic exchanges of mammals during the Late Cenozoic have contributed to current geographic body size patterns. We explore differences in the environmental correlates and phylogenetic patterning of body size between the groups of mammals participating and not participating in past biotic exchanges. Both the association of body size with environmental predictors and its phylogenetic signal were stronger for groups that immigrated into North or South America than for indigenous groups. This pattern, which held when extinct clades were included in the analyses, can be interpreted based on the length of time that clades have had to diversify and occupy niche space. Moreover, we identify a role for historical events such as Cenozoic migrations on configuring contemporary mammal body size patterns and illustrate where these influences have been strongest for New World mammals

High resolution map of estimated human footprint levels across Antarctica

Raster file (tif.) of 30 arcsecond resolution (1x1 km in the equator) with the human footprint levels across Antarctica simulated electronically. Detailed information on the modelling process can be found in Pertierra LR, Hughes KA, Vega GC and Olalla-Tarraga MA (2016) ‘High resolution spatial mapping of human footprint across Antarctica and its implications for strategic avifauna conservation’ PlosONE

Data from: High resolution spatial mapping of human footprint across Antarctica and its implications for the strategic conservation of avifauna

Human footprint models allow visualization of human spatial pressure across the globe. Up until now, Antarctica has been omitted from global footprint models, due possibly to the lack of a permanent human population and poor accessibility to necessary datasets. Yet Antarctic ecosystems face increasing cumulative impacts from the expanding tourism industry and national Antarctic operator activities, the management of which could be improved with footprint assessment tools. Moreover, Antarctic ecosystem dynamics could be modelled to incorporate human drivers. Here we present the first model of estimated human footprint across predominantly ice-free areas of Antarctica. To facilitate integration into global models, the Antarctic model was created using methodologies applied elsewhere with land use, density and accessibility features incorporated. Results showed that human pressure is clustered predominantly in the Antarctic Peninsula, southern Victoria Land and several areas of East Antarctica. To demonstrate the practical application of the footprint model, it was used to investigate the potential threat to Antarctica's avifauna by local human activities. Relative footprint values were recorded for all 204 of Antarctica's Important Bird Areas (IBAs) identified by BirdLife International and the Scientific Committee on Antarctic Research (SCAR). Results indicated that formal protection of avifauna under the Antarctic Treaty System has been unsystematic and is lacking for penguin and flying bird species in some of the IBAs most vulnerable to human activity and impact. More generally, it is hoped that use of this human footprint model may help Antarctic Treaty Consultative Meeting policy makers in their decision making concerning avifauna protection and other issues including cumulative impacts, environmental monitoring, non-native species and terrestrial area protection