Effects of Ocean Acidification on the Transcriptome of Larval Atlantic Cod and Impacts of Parental Acclimation

Ocean acidification, caused by the uptake of carbon dioxide (CO2) from the atmosphere, is impacting many marine organisms. This dissertation investigated the effects of direct exposure and parental acclimation to simulated ocean acidification on the larval stages of Atlantic cod (Gadus morhua, L.). For this, ocean acidification levels predicted for the year 2100 were applied on cod eggs from hatch to 36 days post hatch in in vivo laboratory experiments. The direct exposure experiment clearly showed that Atlantic cod larvae were severely affected by simulated ocean acidification on a phenotypic level (chapter 1). Changes in growth, bone and gill development as well as increased frequency of organ damages were observed under predicted ocean acidification levels compared to controls. Then, the underlying molecular phenotype was assessed, using whole transcriptome sequencing (RNA-Seq), to couple transcriptomic mechanisms to the observed phenotypes (chapter 2). Transcriptome analysis revealed 1413 differentially expressed genes in late larval stages, corresponding to the observed changes in growth and developmental patterns, leading to the conclusion that these changes represent an accelerated development under ocean acidification. Surprisingly, only few genes (3 and 16, respectively) were differentially expressed in the early larval stages. An experiment set to address the effects of long-term parental acclimation (5 month) was performed to assess whether or not this kind of acclimation can mediate the identified detrimental direct effects on the larvae (chapter 3). However, none of the previously observed phenotypes under ocean acidification were found in this experiment, making it impossible to draw any conclusion on the effectiveness of parental acclimation on larval susceptibility to simulated ocean acidification. A concluding meta-analysis between experiments shows that the larvae of Atlantic Cod are to be considered vulnerable to simulated ocean acidification

1. Wochenbericht AL580

Fahrtabschnitt 30.08. - 04.09.202

1. Wochenbericht AL563

31.08.-05.09.202

How to curate and exhibit various types of physical samples using FAIR principles

In a modern research environment, physical samples are often treated as a burden, to be stored and forgotten but when their existence is digitalised and connected to the underlying metadata it becomes a great resource for present and future generations of researchers. This value is further expanded if the information is easily accessible for the research community, particular by offering intelligent search options, interconnection, extraction of data files etc. GEOMAR Helmholtz Centre for Ocean Research has accumulated thousands of biological and geological samples, collected mainly during marine expeditions but also from time series and experiments. Samples date back as far as 1964. Today, the biological collection comprises roughly 180.000 samples (mainly fish and plankton) in formaldehyde as well as a large amount of cryofrozen materials. The core and rock repository holds a collection of about 4000 sediment cores totaling 30.000 core sections and more than 5000 boxes with hard rock samples and refined sample specimens. We have set ourselves the task to curate all these materials and connect them with sufficient metadata in order to make them searchable and, more importantly, findable. The Ocean Science Information System at GEOMAR (OSIS) joins all kind of data resulting from the institute's sea-going expeditions and land-based projects. It is designed for data exchange in the context of these expeditions and experiments, and during a research project's moratorium it supports scientists in documenting provenance of their research data and ultimately their publication. OSIS also serves as a hub for detailed information, metadata and references to peer-review journal publications. The metadata in OSIS are publicly accessible and the system is interlinked to the institutional repository OceanRep as well as several other data archives and databases. It will act as a first entry point for scientists to identify samples by their metadata even before contacting the appropriate curator to inquire sample accessibility and conditions. In context with the physical specimens, OSIS provides linkage to more specific sample databases. Currently we connect biological samples collected on a research vessel via the expedition metadata to their current storage locations on land, which will be further refined to connecting single ship-based sampling stations with the storage position of individual samples. Moreover, for geological samples (sediment cores) metadata from OSIS are made available for further in-house use by the software CurationDIS from smartcube GmbH. The sediment core specific details are managed by the curation software which is also used to provide a persistent identifier (IGSN). Future plans include connecting rock samples in a similar structure as sediment cores

Ocean Acidification Effects on Atlantic Cod Larval Survival and Recruitment to the Fished Population

-How fisheries will be impacted by climate change is far from understood. While some fish populations may be able to escape global warming via range shifts, they cannot escape ocean acidification (OA), an inevitable consequence of the dissolution of anthropogenic carbon dioxide (CO2) emissions in marine waters. How ocean acidification affects population dynamics of commercially important fish species is critical for adapting management practices of exploited fish populations. Ocean acidification has been shown to impair fish larvae’s sensory abilities, affect the morphology of otoliths, cause tissue damage and cause behavioural changes. Here, we obtain first experimental mortality estimates for Atlantic cod larvae under OA and incorporate these effects into recruitment models. End-of-century levels of ocean acidification (~1100 μatm according to the IPCC RCP 8.5) resulted in a doubling of daily mortality rates compared to present-day CO2 concentrations during the first 25 days post hatching (dph), a critical phase for population recruitment. These results were consistent under different feeding regimes, stocking densities and in two cod populations (Western Baltic and Barents Sea stock). When mortality data were included into Ricker-type stock-recruitment models, recruitment was reduced to an average of 8 and 24% of current recruitment for the two populations, respectively. Our results highlight the importance of including vulnerable early life stages when addressing effects of climate change on fish stocks

Divergent responses of Atlantic cod to ocean acidification and food limitation

In order to understand the effect of global change on marine fishes, it is imperative to quantify the effects on fundamental parameters such as survival and growth. Larval survival and recruitment of the Atlantic cod (Gadus morhua) were found to be heavily impaired by end-of-century levels of ocean acidification. Here, we analysed larval growth among 35–36 days old surviving larvae, along with organ development and ossification of the skeleton. We combined CO2treatments (ambient: 503 µatm, elevated: 1,179 µatm) with food availability in order to evaluate the effect of energy limitation in addition to the ocean acidification stressor. As expected, larval size (as a proxy for growth) and skeletogenesis were positively affected by high food availability. We found significant interactions between acidification and food availability. Larvae fed ad libitum showed little difference in growth and skeletogenesis due to the CO2 treatment. Larvae under energy limitation were significantly larger and had further developed skeletal structures in the elevated CO2 treatment compared to the ambient CO2 treatment. However, the elevated CO2 group revealed impairments in critically important organs, such as the liver, and had comparatively smaller functional gills indicating a mismatch between size and function. It is therefore likely that individual larvae that had survived acidification treatments will suffer from impairments later during ontogeny. Our study highlights important allocation trade-off between growth and organ development, which is critically important to interpret acidification effects on early life stages of fish

Pilot study to investigate the effect of long-term exposure to high pCO2 on adult cod (Gadus morhua) otolith morphology and calcium carbonate deposition

Funding was provided by the Bonus Baltic Sea research and development programme (Art 185) BIO-C3 project, funded jointly by the EU and the BMBF (Grant No. 03F0682A), BIOACID project (Biological Impacts of Ocean Acidification: Grant No. 03F0655K) funded by the German Ministry for Education and Research (BMBF), and the EU AQUAEXCEL transnational access grant for aquaculture infrastructures. Part of the work was supported by the FINEAQUA-project (Grant Number 12212001) funded by the Program for the Future Economy (financed by the European Regional Development Fund, the Federal Republic of Germany and the state of Schleswig–Holstein), the Centre for Marine Aquaculture, Tromsø, and the Marine Alliance for Science and Technology for Scotland (MASTS) Small Grant initiative (SG330 and SG407), and their support especially by the staff of the centre for Marine Aquaculture is gratefully acknowledged. MASTS is funded by the Scottish Funding Council (grant reference HR09011) and contributing institutions. PBW would like to thank the Royal Society for the award of an Industry Fellowship. DGS is a Serra Húnter Tenure-Track lecturer.To date the study of ocean acidification on fish otolith formation has been mainly focused on larval and juvenile stages. In the present pilot study, wild-captured adult Atlantic cod (Gadus morhua) were exposed to two different levels of pCO2, 422µatm (ambient, low pCO2) or 1091µatm (high pCO2), for a period of 30 weeks (from mid-October to early April 2014–2015) in order to study the effects on otolith size, shape and CaCO3 crystallization amongst other biological parameters. We found that otoliths from cod exposed to high pCO2 were slightly smaller (− 3.4% in length; − 3.3% in perimeter), rounder (− 2.9% circularity and + 4% roundness) but heavier (+ 5%) than the low pCO2 group. Interestingly, there were different effects in males and females; for instance, male cods exposed to high pCO2 exhibited significant changes in circularity (− 3%) and roundness (+ 4%) compared to the low pCO2 males, but without significant changes on otolith dimensions, while females exposed to high pCO2 had smaller otoliths as shown for length (− 5.6%), width (− 2%), perimeter (− 3.5%) and area (− 4.8%). Furthermore, while the majority of the otoliths analysed showed normal aragonite deposition, 10% of fish exposed to 1091µatm of pCO2 had an abnormal accretion of calcite, suggesting a shift on calcium carbonate polymorph crystallization in some individuals under high pCO2 conditions. Our preliminary results indicate that high levels of pCO2 in adult Atlantic cod might affect otolith growth in a gender-specific way. Our findings reveal that otoliths from adult cod are affected by ocean acidification, and we believe that the present study will prompt further research into this currently under-explored areaPublisher PDFPeer reviewe

Transcriptome profiling reveals exposure to predicted end-of-century ocean acidification as a stealth stressor for Atlantic cod larvae

Ocean acidification (OA), a direct consequence of increasing atmospheric CO2 concentration dissolving in ocean waters, is impacting many fish species. Little is known about the molecular mechanisms underlying the observed physiological impacts in fish. We used RNAseq to characterize the transcriptome of 3 different larval stages of Atlantic cod (Gadus morhua) exposed to simulated OA at levels (1179 µatm CO2) representing end-of-century predictions compared to controls (503 µatm CO2), which were shown to induce tissue damage and elevated mortality in G. morhua. Only few genes were differentially expressed in 6 and 13 days-post-hatching (dph) (3 and 16 genes, respectively), during a period when maximal mortality as a response to elevated pCO2 occurred. At 36 dph, 1413 genes were differentially expressed, most likely caused by developmental asynchrony between the treatment groups, with individuals under OA growing faster. A target gene analysis revealed only few genes of the universal and well-defined cellular stress response to be differentially expressed. We thus suggest that predicted ocean acidification levels constitute a “stealth stress” for early Atlantic cod larvae, with a rapid breakdown of cellular homeostasis leading to organismal death that was missed even with an 8-fold replication implemented in this study

Caught in the middle: bottom‑up and top‑down processes impacting recruitment in a small pelagic fsh

Understanding the drivers behind fluctuations in fish populations remains a key objective in fishery science. Our predictive capacity to explain these fluctuations is still relatively low, due to the amalgam of interacting bottom-up and top-down factors, which vary across time and space among and within populations. Gaining a mechanistic understanding of these recruitment drivers requires a holistic approach, combining field, experimental and modelling efforts. Here, we use the Western Baltic Spring-Spawning (WBSS) herring (Clupea harengus) to exemplify the power of this holistic approach and the high complexity of the recruitment drivers (and their interactions). Since the early 2000s, low recruitment levels have promoted intense research on this stock. Our literature synthesis suggests that the major drivers are habitat compression of the spawning beds (due to eutrophication and coastal modification mainly) and warming, which indirectly leads to changes in spawning phenology, prey abundance and predation pressure. Other factors include increased intensity of extreme climate events and new predators in the system. Four main knowledge gaps were identified related to life-cycle migration and habitat use, population structure and demographics, life-stage specific impact of multi-stressors, and predator–prey interactions. Specific research topics within these areas are proposed, as well as the priority to support a sustainable management of the stock. Given that the Baltic Sea is severely impacted by warming, eutrophication and altered precipitation, WBSS herring could be a harbinger of potential effects of changing environmental drivers to the recruitment of small pelagic fishes in other coastal areas in the world.publishedVersio