Formalizing spatiotemporal knowledge in remote sensing applications to improve image interpretation

Technological tools allow the generation of large volumes of data. For example satellite images aid in the study of spatiotemporal phenomena in a range of disciplines such as urban planning environmental sciences and health care. Thus remote-sensing experts must handle various and complex image sets for their interpretations. The GIS community has undertaken significant work in describing spatiotemporal features and standard specifications nowadays provide design foundations for GIS software and spatial databases. We argue that this spatiotemporal knowledge and expertise would provide invaluable support for the field of image interpretation. As a result we propose a high level conceptual framework based on existing and standardized approaches offering enough modularity and adaptability to represent the various dimensions of spatiotemporal knowledge

Caractérisation multi-plan d'un écoulement de cavité tridimensionnel par PIV stéréoscopique

La mesure des trois composantes de la vitesse est obtenue par PIV stéréoscopique avec un algorithme de flot optique. Cette méthode est un outil efficace pour une caractérisation quantitative de champs instantanés tridimensionnels comme les écoulements au sein desquels se développent des structures tourbillonnaires. Ce système est ici appliqué à un écoulement de recirculation dans une cavité, où des instabilités associées à des structures tourbillonnaires sont présentes. Les mesures sont effectuées dans deux plans d'observation orthogonaux pour rendre compte de la structure 3D de l'écoulement

Signature fréquentielle des structures cohérentes-décomposition en modes dynamiques : application à un écoulement en cavité ouverte

La dimension de la dynamique effective d'un écoulement impactant peut-être considérablement réduite par les conditions aux limites et les oscillations auto induites qu'elles engendrent, la signature spectrale étant associée à des structures spatiales remarquables. Une méthode de décomposition (DMD) utilisant l'opérateur de Koopman, permet d'extraire directement les propriétés de la dynamique de l'écoulement non-linéairement saturée. Nous appliquons la DMD pour mettre en évidence la contribution spectrale des structures longitudinales et transversales de l'écoulement de cavité

A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome

<p>Abstract</p> <p>Background</p> <p>"Open" transcriptome analysis methods allow to study gene expression without <it>a priori </it>knowledge of the transcript sequences. As of now, SAGE (Serial Analysis of Gene Expression), LongSAGE and MPSS (Massively Parallel Signature Sequencing) are the mostly used methods for "open" transcriptome analysis. Both LongSAGE and MPSS rely on the isolation of 21 pb tag sequences from each transcript. In contrast to LongSAGE, the high throughput sequencing method used in MPSS enables the rapid sequencing of very large libraries containing several millions of tags, allowing deep transcriptome analysis. However, a bias in the complexity of the transcriptome representation obtained by MPSS was recently uncovered.</p> <p>Results</p> <p>In order to make a deep analysis of mouse hypothalamus transcriptome avoiding the limitation introduced by MPSS, we combined LongSAGE with the Solexa sequencing technology and obtained a library of more than 11 millions of tags. We then compared it to a LongSAGE library of mouse hypothalamus sequenced with the Sanger method.</p> <p>Conclusion</p> <p>We found that Solexa sequencing technology combined with LongSAGE is perfectly suited for deep transcriptome analysis. In contrast to MPSS, it gives a complex representation of transcriptome as reliable as a LongSAGE library sequenced by the Sanger method.</p

Involvement of Arabidopsis BIG protein in cell death mediated by Myo- Inositol homeostasis

International audienc

Relaxation and emission of Bragg-mode and cavity-mode polaritons in a ZnO microcavity at room temperature

The strong coupling regime in a ZnO microcavity is investigated through room temperature photoluminescence and reflectivity experiments. The simultaneous strong coupling of excitons to the cavity mode and the first Bragg mode is demonstrated at room temperature. The polariton relaxation is followed as a function of the excitation density. A relaxation bottleneck is evidenced in the Bragg-mode polariton branch. It is partly broken under strong excitation density, so that the emission from this branch dominates the one from cavity-mode polaritons

GWAS in the SIGNAL/PHARE clinical cohort restricts the association between the FGFR2 locus and estrogen receptor status to HER2-negative breast cancer patients

International audienceGenetic polymorphisms are associated with breast cancer risk. Clinical and epidemiological observations suggest that clinical characteristics of breast cancer, such as estrogen receptor or HER2 status, are also influenced by hereditary factors. To identify genetic variants associated with pathological characteristics of breast cancer patients, a Genome Wide Association Study was performed in a cohort of 9365 women from the French nationwide SIGNAL/PHARE studies (NCT00381901/RECF1098). Strong association between the FGFR2 locus and ER status of breast cancer patients was observed (ER-positive n=6211, ER-negative n=2516; rs3135718 OR=1.34 p=5.46x10-12). This association was limited to patients with HER2-negative tumors (ER-positive n=4267, ER-negative n=1185; rs3135724 OR=1.85 p=1.16x10-11). The FGFR2 locus is known to be associated with breast cancer risk. This study provides sound evidence for an association between variants in the FGFR2 locus and ER status among breast cancer patients, particularly among patients with HER2-negative disease. This refinement of the association between FGFR2 variants and ER-status to HER2-negative disease provides novel insight to potential biological and clinical influence of genetic polymorphisms on breast tumors

Medulloblastomas with ELP1 pathogenic variants: A weakly penetrant syndrome with a restricted spectrum in a limited age window

Background: ELP1 pathogenic variants (PV) have been recently identified as the most frequent variants predisposing to Sonic Hedgehog (SHH) medulloblastomas (MB); however, guidelines are still lacking for genetic counseling in this new syndrome. Methods: We retrospectively reviewed clinical and genetic data of a French series of 29 ELP1-mutated MB. Results: All patients developed SHH-MB, with a biallelic inactivation of PTCH1 found in 24 tumors. Other recurrent alterations encompassed the TP53 pathway and activation of MYCN/MYCL signaling. The median age at diagnosis was 7.3 years (range: 3-14). ELP1-mutated MB behave as sporadic cases, with similar distribution within clinical and molecular risk groups and similar outcomes (5 y - OS=86%); no unusual side effect of treatments was noticed. Remarkably, a germline ELP1 PV was identified in all patients with available constitutional DNA (n=26); moreover, all tested familial trio (n=11) revealed that the PVs were inherited. Two of the 26 index cases from the French series had a family history of MB; pedigrees from these patients and from 1 additional Dutch family suggested a weak penetrance. Apart from MB, no cancer was associated with ELP1 PVs; second tumors reported in 4 patients occurred within the irradiation fields, in the usual time-lapse for expected radiotherapy-induced neoplasms. Conclusions: The low penetrance, the "at risk' age window limited to childhood and the narrow tumor spectrum, question the actual benefit of genetic screening in these patients and their family. Our results suggest restricting ELP1 germline sequencing to patients with SHH-MB, depending on the parents"request