A Linear-Time Branching-Time Spectrum for Behavioral Specification Theories

We propose behavioral specification theories for most equivalences in the linear-time--branching-time spectrum. Almost all previous work on specification theories focuses on bisimilarity, but there is a clear interest in specification theories for other preorders and equivalences. We show that specification theories for preorders cannot exist and develop a general scheme which allows us to define behavioral specification theories, based on disjunctive modal transition systems, for most equivalences in the linear-time--branching-time spectrum

Refinement for Transition Systems with Responses

Motivated by the response pattern for property specifications and applications within flexible workflow management systems, we report upon an initial study of modal and mixed transition systems in which the must transitions are interpreted as must eventually, and in which implementations can contain may behaviors that are resolved at run-time. We propose Transition Systems with Responses (TSRs) as a suitable model for this study. We prove that TSRs correspond to a restricted class of mixed transition systems, which we refer to as the action-deterministic mixed transition systems. We show that TSRs allow for a natural definition of deadlocked and accepting states. We then transfer the standard definition of refinement for mixed transition systems to TSRs and prove that refinement does not preserve deadlock freedom. This leads to the proposal of safe refinements, which are those that preserve deadlock freedom. We exemplify the use of TSRs and (safe) refinements on a small medication workflow.Comment: In Proceedings FIT 2012, arXiv:1207.348

Modal Interface Automata

De Alfaro and Henzinger's Interface Automata (IA) and Nyman et al.'s recent combination IOMTS of IA and Larsen's Modal Transition Systems (MTS) are established frameworks for specifying interfaces of system components. However, neither IA nor IOMTS consider conjunction that is needed in practice when a component shall satisfy multiple interfaces, while Larsen's MTS-conjunction is not closed and Bene\v{s} et al.'s conjunction on disjunctive MTS does not treat internal transitions. In addition, IOMTS-parallel composition exhibits a compositionality defect. This article defines conjunction (and also disjunction) on IA and disjunctive MTS and proves the operators to be 'correct', i.e., the greatest lower bounds (least upper bounds) wrt. IA- and resp. MTS-refinement. As its main contribution, a novel interface theory called Modal Interface Automata (MIA) is introduced: MIA is a rich subset of IOMTS featuring explicit output-must-transitions while input-transitions are always allowed implicitly, is equipped with compositional parallel, conjunction and disjunction operators, and allows a simpler embedding of IA than Nyman's. Thus, it fixes the shortcomings of related work, without restricting designers to deterministic interfaces as Raclet et al.'s modal interface theory does.Comment: 28 page

Refinement Modal Logic

In this paper we present {\em refinement modal logic}. A refinement is like a bisimulation, except that from the three relational requirements only `atoms' and `back' need to be satisfied. Our logic contains a new operator 'all' in addition to the standard modalities 'box' for each agent. The operator 'all' acts as a quantifier over the set of all refinements of a given model. As a variation on a bisimulation quantifier, this refinement operator or refinement quantifier 'all' can be seen as quantifying over a variable not occurring in the formula bound by it. The logic combines the simplicity of multi-agent modal logic with some powers of monadic second-order quantification. We present a sound and complete axiomatization of multi-agent refinement modal logic. We also present an extension of the logic to the modal mu-calculus, and an axiomatization for the single-agent version of this logic. Examples and applications are also discussed: to software verification and design (the set of agents can also be seen as a set of actions), and to dynamic epistemic logic. We further give detailed results on the complexity of satisfiability, and on succinctness

Mixed Nondeterministic-Probabilistic Automata: Blending graphical probabilistic models with nondeterminism

Graphical models in probability and statistics are a core concept in the area of probabilistic reasoning and probabilistic programming—graphical models include Bayesian networks and factor graphs. In this paper we develop a new model of mixed (nondeterministic/probabilistic) automata that subsumes both nondeterministic automata and graphical probabilistic models. Mixed Automata are equipped with parallel composition, simulation relation, and support message passing algorithms inherited from graphical probabilistic models. Segala’s Probabilistic Automatacan be mapped to Mixed Automata

A Few Considerations on Structural and Logical Composition in Specification Theories

Over the last 20 years a large number of automata-based specification theories have been proposed for modeling of discrete,real-time and probabilistic systems. We have observed a lot of shared algebraic structure between these formalisms. In this short abstract, we collect results of our work in progress on describing and systematizing the algebraic assumptions in specification theories.Comment: In Proceedings FIT 2010, arXiv:1101.426

HuR involvement in mitotic clonal expansion during acquisition of the adipocyte phenotype

In the nucleus HuR binds to mRNAs containing adenylate-uridylate rich elements in the 3?- untranslated region. HuR may influence expression of its ligand mRNA through regulation of polyadenylation, translocation of the message to the cytosol, stabilization of the mRNA and/or altering its translational efficiency. Suppression of HuR using siRNA resulted in an attenuation of the 3T3-L1 differentiation program, consistent with HuR control of the expression of mRNA ligand (s) critical to the differentiation process. In the current study we begin to identify mRNA ligands of HuR whose regulated expression is necessary for adipogenesis. Originally published in Biochemical and Biophysiological Research Communications Vol. 383, No. 2 2009

Structural Refinement for the Modal nu-Calculus

We introduce a new notion of structural refinement, a sound abstraction of logical implication, for the modal nu-calculus. Using new translations between the modal nu-calculus and disjunctive modal transition systems, we show that these two specification formalisms are structurally equivalent. Using our translations, we also transfer the structural operations of composition and quotient from disjunctive modal transition systems to the modal nu-calculus. This shows that the modal nu-calculus supports composition and decomposition of specifications.Comment: Accepted at ICTAC 201

Hennessy-Milner Logic with Greatest Fixed Points as a Complete Behavioural Specification Theory

There are two fundamentally different approaches to specifying and verifying properties of systems. The logical approach makes use of specifications given as formulae of temporal or modal logics and relies on efficient model checking algorithms; the behavioural approach exploits various equivalence or refinement checking methods, provided the specifications are given in the same formalism as implementations. In this paper we provide translations between the logical formalism of Hennessy-Milner logic with greatest fixed points and the behavioural formalism of disjunctive modal transition systems. We also introduce a new operation of quotient for the above equivalent formalisms, which is adjoint to structural composition and allows synthesis of missing specifications from partial implementations. This is a substantial generalisation of the quotient for deterministic modal transition systems defined in earlier papers

Contracts for Systems Design: Theory

Aircrafts, trains, cars, plants, distributed telecommunication military or health care systems,and more, involve systems design as a critical step. Complexity has caused system design times and coststo go severely over budget so as to threaten the health of entire industrial sectors. Heuristic methods andstandard practices do not seem to scale with complexity so that novel design methods and tools based on astrong theoretical foundation are sorely needed. Model-based design as well as other methodologies suchas layered and compositional design have been used recently but a unified intellectual framework with acomplete design flow supported by formal tools is still lacking.Recently an “orthogonal” approach has been proposed that can be applied to all methodologies introducedthus far to provide a rigorous scaffolding for verification, analysis and abstraction/refinement: contractbaseddesign. Several results have been obtained in this domain but a unified treatment of the topic that canhelp in putting contract-based design in perspective is missing. This paper intends to provide such treatmentwhere contracts are precisely defined and characterized so that they can be used in design methodologiessuch as the ones mentioned above with no ambiguity. In addition, the paper provides an important linkbetween interface and contract theories to show similarities and correspondences.This paper is complemented by a companion paper where contract based design is illustrated throughuse cases