Matrix Reordering Methods for Table and Network Visualization

International audienceThis survey provides a description of algorithms to reorder visual matrices of tabular data and adjacency matrix of networks. The goal of this survey is to provide a comprehensive list of reordering algorithms published in different fields such as statistics, bioinformatics, or graph theory. While several of these algorithms are described in publications and others are available in software libraries and programs, there is little awareness of what is done across all fields. Our survey aims at describing these reordering algorithms in a unified manner to enable a wide audience to understand their differences and subtleties. We organize this corpus in a consistent manner, independently of the application or research field. We also provide practical guidance on how to select appropriate algorithms depending on the structure and size of the matrix to reorder, and point to implementations when available

Experiments and Recommendations for Partitioning Systems of Equations

Partitioning the systems of equations is a very important process when solving it on a parallel computer. This paper presents some criteria which leads to more efficient parallelization, that must be taken into consideration. New criteria added to preconditioning process by reducing average bandwidth are pro- posed in this paper. These new criteria lead to a combination between preconditioning and partitioning of systems equations, so no need two distinct algorithms/processes. In our proposed methods - where the preconditioning is done by reducing the average bandwidth- two directions were followed in terms of partitioning: for a given preconditioned system determining the best partitioning (or one as close) and the second consist in achieving an adequate preconditioning, depending on a given/desired partitioning. A mixed method it is also proposed. Experimental results, conclusions and recommendations, obtained after parallel implementation of conjugate gradient on IBM BlueGene /P supercomputer- based on a synchronous model of parallelization- are also presented in this paper

The Bandwidths of a Matrix. A Survey of Algorithms

The bandwidth, average bandwidth, envelope, profile and antibandwidth of the matrices have been the subjects of study for at least 45 years. These problems have generated considerable interest over the years because of them practical relevance in areas like: solving the system of equations, finite element methods, circuit design, hypertext layout, chemical kinetics, numerical geophysics etc. In this paper a brief description of these problems are made in terms of their definitions, followed by a comparative study of them, using both approaches: matrix geometry and graph theory. Time evolution of the corresponding algorithms as well as a short description of them are made. The work also contains concrete real applications for which a large part of presented algorithms were developed