Jena Soil Model (JSM v1.0; revision 1934): a microbial soil organic carbon model integrated with nitrogen and phosphorus processes

Plant–soil interactions, such as the coupling of plants' below-ground biomass allocation with soil organic matter (SOM) decomposition, nutrient release and plant uptake, are essential to understand the response of carbon (C) cycling to global changes. However, these processes are poorly represented in the current terrestrial biosphere models owing to the simple first-order approach of SOM cycling and the ignorance of variations within a soil profile. While the emerging microbially explicit soil organic C models can better describe C formation and turnover, at present, they lack a full coupling to the nitrogen (N) and phosphorus (P) cycles with the soil profile. Here we present a new SOM model – the Jena Soil Model (JSM) – which is microbially explicit, vertically resolved and integrated with the N and P cycles. To account for the effects of nutrient availability and litter quality on decomposition, JSM includes the representation of enzyme allocation to different depolymerisation sources based on the microbial adaptation approach as well as of nutrient acquisition competition based on the equilibrium chemistry approximation approach. Herein, we present the model structure and basic features of model performance in a beech forest in Germany. The model reproduced the main SOM stocks and microbial biomass as well as their vertical patterns in the soil profile. We further tested the sensitivity of the model to parameterisation and showed that JSM is generally sensitive to changes in microbial stoichiometry and processes

Evaluating two soil carbon models within the global land surface model JSBACH using surface and spaceborne observations of atmospheric CO₂

The trajectories of soil carbon (C) in the changing climate are of utmost importance, as soil carbon is a substantial carbon storage with a large potential to impact the atmospheric carbon dioxide (CO2) burden. Atmospheric CO2 observations integrate all processes affecting C exchange between the surface and the atmosphere. Therefore they provide a benchmark for carbon cycle models. We evaluated two distinct soil carbon models (CBALANCE and YASSO) that were implemented to a global land surface model (JSBACH) against atmospheric CO2 observations. We transported the biospheric carbon fluxes obtained by JSBACH using the atmospheric transport model TM5 to obtain atmospheric CO2. We then compared these results with surface observations from Global Atmosphere Watch (GAW) stations as well as with column XCO2 retrievals from the GOSAT satellite. The seasonal cycles of atmospheric CO2 estimated by the two different soil models differed. The estimates from the CBALANCE soil model were more in line with the surface observations at low latitudes (0 N–45 N) with only 1 % bias in the seasonal cycle amplitude (SCA), whereas YASSO was underestimating the SCA in this region by 32 %. YASSO gave more realistic seasonal cycle amplitudes of CO2 at northern boreal sites (north of 45 N) with underestimation of 15 % compared to 30 % overestimation by CBALANCE. Generally, the estimates from CBALANCE were more successful in capturing the seasonal patterns and seasonal cycle amplitudes of atmospheric CO2 even though it overestimated soil carbon stocks by 225 % (compared to underestimation of 36 % by YASSO) and its predictions of the global distribution of soil carbon stocks was unrealistic. The reasons for these differences in the results are related to the different environmental drivers and their functional dependencies of these two soil carbon models. In the tropical region the YASSO model showed earlier increase in season of the heterotophic respiration since it is driven by precipitation instead of soil moisture as CBALANCE. In the temperate and boreal region the role of temperature is more dominant. There the heterotophic respiration from the YASSO model had larger annual variability, driven by air temperature, compared to the CBALANCE which is driven by soil temperature. The results underline the importance of using sub-yearly data in the development of soil carbon models when they are used in shorter than annual time scales

Improved understanding of drought controls on seasonal variation in Mediterranean forest canopy CO₂ and water fluxes through combined in situ measurements and ecosystem modelling

Water stress is a defining characteristic of Mediterranean ecosystems, and is likely to become more severe in the coming decades. Simulation models are key tools for making predictions, but our current understanding of how soil moisture controls ecosystem functioning is not sufficient to adequately constrain parameterisations. <br><br> Canopy-scale flux data from four forest ecosystems with Mediterranean-type climates were used in order to analyse the physiological controls on carbon and water flues through the year. Significant non-stomatal limitations on photosynthesis were detected, along with lesser changes in the conductance-assimilation relationship. New model parameterisations were derived and implemented in two contrasting modelling approaches. <br><br> The effectiveness of two models, one a dynamic global vegetation model ("ORCHIDEE"), and the other a forest growth model particularly developed for Mediterranean simulations ("GOTILWA+"), was assessed and modelled canopy responses to seasonal changes in soil moisture were analysed in comparison with in situ flux measurements. <br><br> In contrast to commonly held assumptions, we find that changing the ratio of conductance to assimilation under natural, seasonally-developing, soil moisture stress is not sufficient to reproduce forest canopy CO₂ and water fluxes. However, accurate predictions of both CO₂ and water fluxes under all soil moisture levels encountered in the field are obtained if photosynthetic capacity is assumed to vary with soil moisture. This new parameterisation has important consequences for simulated responses of carbon and water fluxes to seasonal soil moisture stress, and should greatly improve our ability to anticipate future impacts of climate changes on the functioning of ecosystems in Mediterranean-type climates

Behavioral and Electrophysiological Effects of Transcranial Direct Current Stimulation of the Parietal Cortex in a Visuo-Spatial Working Memory Task

Impairments of working memory (WM) performance are frequent concomitant symptoms in several psychiatric and neurologic diseases. Despite the great advance in treating the reduced WM abilities in patients suffering from, e.g., Parkinson’s and Alzheimer’s disease by means of transcranial direct current stimulation (tDCS), the exact neurophysiological underpinning subserving these therapeutic tDCS-effects are still unknown. In the present study we investigated the impact of tDCS on performance in a visuo-spatial WM task and its underlying neural activity. In three experimental sessions, participants performed a delayed matching-to-sample WM task after sham, anodal, and cathodal tDCS over the right parietal cortex. The results showed that tDCS modulated WM performance and its underlying electrophysiological brain activity in a polarity-specific way. Parietal tDCS altered event-related potentials and oscillatory power in the alpha band at posterior electrode sites. The present study demonstrates that posterior tDCS can alter visuo-spatial WM performance by modulating the underlying neural activity. This result can be considered an important step toward a better understanding of the mechanisms involved in tDCS-induced modulations of cognitive processing. This is of particular importance for the application of electrical brain stimulation as a therapeutic treatment of neuropsychiatric deficits in clinical populations

Implications of incorporating N cycling and N limitations on primary production in an individual-based dynamic vegetation model

The LPJ-GUESS dynamic vegetation model uniquely combines an individual- and patch-based representation of vegetation dynamics with ecosystem biogeochemical cycling from regional to global scales. We present an updated version that includes plant and soil N dynamics, analysing the implications of accounting for C–N interactions on predictions and performance of the model. Stand structural dynamics and allometric scaling of tree growth suggested by global databases of forest stand structure and development were well reproduced by the model in comparison to an earlier multi-model study. Accounting for N cycle dynamics improved the goodness of fit for broadleaved forests. N limitation associated with low N-mineralisation rates reduces productivity of cold-climate and dry-climate ecosystems relative to mesic temperate and tropical ecosystems. In a model experiment emulating free-air CO₂ enrichment (FACE) treatment for forests globally, N limitation associated with low N-mineralisation rates of colder soils reduces CO₂ enhancement of net primary production (NPP) for boreal forests, while some temperate and tropical forests exhibit increased NPP enhancement. Under a business-as-usual future climate and emissions scenario, ecosystem C storage globally was projected to increase by ca. 10%; additional N requirements to match this increasing ecosystem C were within the high N supply limit estimated on stoichiometric grounds in an earlier study. Our results highlight the importance of accounting for C–N interactions in studies of global terrestrial N cycling, and as a basis for understanding mechanisms on local scales and in different regional contexts

Improved understanding of drought controls on seasonal variation in Mediterranean forest canopy CO2 and water fluxes through combined in situ measurements and ecosystem modelling

Water stress is a defining characteristic of Mediterranean ecosystems, and is likely to become more severe in the coming decades. Simulation models are key tools for making predictions, but our current understanding of how soil moisture controls ecosystem functioning is not sufficient to adequately constrain parameterisations. Canopy-scale flux data from four forest ecosystems with Mediterranean-type climates were used in order to analyse the physiological controls on carbon and water flues through the year. Significant non-stomatal limitations on photosynthesis were detected, along with lesser changes in the conductance-assimilation relationship. New model parameterisations were derived and implemented in two contrasting modelling approaches. The effectiveness of two models, one a dynamic global vegetation model ('ORCHIDEE'), and the other a forest growth model particularly developed for Mediterranean simulations ('GOTILWA+'), was assessed and modelled canopy responses to seasonal changes in soil moisture were analysed in comparison with in situ flux measurements. In contrast to commonly held assumptions, we find that changing the ratio of conductance to assimilation under natural, seasonally-developing, soil moisture stress is not sufficient to reproduce forest canopy CO2 and water fluxes. However, accurate predictions of both CO2 and water fluxes under all soil moisture levels encountered in the field are obtained if photosynthetic capacity is assumed to vary with soil moisture. This new parameterisation has important consequences for simulated responses of carbon and water fluxes to seasonal soil moisture stress, and should greatly improve our ability to anticipate future impacts of climate changes on the functioning of ecosystems in Mediterranean-type climates

Improved representation of phosphorus exchange on soil mineral surfaces reduces estimates of P limitation in temperate forest ecosystems

International audiencePhosphorus (P) availability affects the response of terrestrial ecosystems to environmental and climate change (e.g., elevated CO2), yet the magnitude of this effect remains uncertain. This uncertainty arises mainly from a lack of quantitative understanding of the soil biological and geochemical P cycling processes, particularly the P exchange with soil mineral surfaces, which is often described by a Langmuir sorption isotherm.We first conducted a literature review on P sorption experiments and terrestrial biosphere models (TBMs) using a Langmuir isotherm. We then developed a new algorithm to describe the inorganic P exchange between soil solution and soil matrix based on the double-surface Langmuir isotherm and extracted empirical equations to calculate the sorption capacity and Langmuir coefficient. We finally tested the conventional and new models of P sorption at five beech forest sites in Germany along a soil P stock gradient using the QUINCY (QUantifying Interactions between terrestrial Nutrient CYcles and the climate system) TBM.We found that the conventional (single-surface) Langmuir isotherm approach in most TBMs largely differed from P sorption experiments regarding the sorption capacities and Langmuir coefficients, and it simulated an overly low soil P-buffering capacity. Conversely, the double-surface Langmuir isotherm approach adequately reproduced the observed patterns of soil inorganic P pools. The better representation of inorganic P cycling using the double-surface Langmuir approach also improved simulated foliar N and P concentrations as well as the patterns of gross primary production and vegetation carbon across the soil P gradient. The novel model generally reduces the estimates of P limitation compared with the conventional model, particularly at the low-P site, as the model constraint of slow inorganic P exchange on plant productivity is reduced

Contrasting anatomical and biochemical controls on mesophyll conductance across plant functional types

Mesophyll conductance (gm) limits photosynthesis by restricting CO2 diffusion between the substomatal cavities and chloroplasts. Although it is known that gm is determined by both leaf anatomical and biochemical traits, their relative contribution across plant functional types (PFTs) is still unclear. We compiled a dataset of gm measurements and concomitant leaf traits in unstressed plants comprising 563 studies and 617 species from all major PFTs. We investigated to what extent gm limits photosynthesis across PFTs, how gm relates to structural, anatomical, biochemical, and physiological leaf properties, and whether these relationships differ among PFTs. We found that gm imposes a significant limitation to photosynthesis in all C3 PFTs, ranging from 10–30% in most herbaceous annuals to 25–50% in woody evergreens. Anatomical leaf traits explained a significant proportion of the variation in gm (R2 &gt; 0.3) in all PFTs except annual herbs, in which gm is more strongly related to biochemical factors associated with leaf nitrogen and potassium content. Our results underline the need to elucidate mechanisms underlying the global variability of gm. We emphasise the underestimated potential of gm for improving photosynthesis in crops and identify modifications in leaf biochemistry as the most promising pathway for increasing gm in these species

Assessment of the impacts of biological nitrogen fixation structural uncertainty in CMIP6 earth system models

Biological nitrogen fixation is the main source of new nitrogen into natural terrestrial ecosystems and consequently in the nitrogen cycle in many earth system models. Representation of biological nitrogen fixation varies, and because of the tight coupling between the carbon and nitrogen cycles, previous studies have shown that this affects projected changes in net primary productivity. Here we present the first assessment of the performance of biological nitrogen fixation in models contributing to CMIP6 compared to observed and observation-constrained estimates of biological nitrogen fixation. We find that 9 out of 10 models represent global total biological nitrogen fixation within the uncertainty in recent global estimates. However, 6 out of 10 models overestimate the amount of fixation in the tropics and therefore the extent of the latitudinal gradient in the global distribution. For the SSP3-7.0 scenario of future climate change, models project increases in fixation over the 21st century of up to 80 %. However, while the historical range of biological nitrogen fixation amongst models is large (up to 140 kg N ha−1 yr−1 at the grid cell level and 43–208 Tg N yr−1 globally) this does not have explanatory power for variations within the model ensemble of net primary productivity or the coupled nitrogen–carbon cycle. Models with shared structures can have significant variations in both biological nitrogen fixation and other parts of the nitrogen cycle without differing in their net primary productivity. This points to systematic challenges in the representation of carbon–nitrogen model structures and the severe limitations of models using net primary productivity or evapotranspiration to project the biological nitrogen fixation response to elevated atmospheric carbon dioxide or other environmental changes.</p

Perimovement decrease of alpha/beta oscillations in the human nucleus accumbens

The human nucleus accumbens is thought to play an important role in guiding future action selection via an evaluation of current action outcomes. Here we provide electrophysiological evidence for a more direct, i.e., online, role during action preparation. We recorded local field potentials from the nucleus accumbens in patients with epilepsy undergoing surgery for deep brain stimulation. We found a consistent decrease in the power of alpha/beta oscillations (10–30 Hz) before and around the time of movements. This perimovement alpha/beta desynchronization was observed in seven of eight patients and was present both before instructed movements in a serial reaction time task as well as before self-paced, deliberate choices in a decision making task. A similar beta decrease over sensorimotor cortex and in the subthalamic nucleus has been directly related to movement preparation and execution. Our results support the idea of a direct role of the human nucleus accumbens in action preparation and execution