A Rapid Chromatographic Method For Recovery Of 15No2- And No3- Produced By Nitrification In Aqueous Samples

The sensitivity and comparative simplicity of N-15 stable isotopic tracer techniques has been used to quantify rates of nitrification in aquatic systems. However, the most commonly used method for recovery of inorganic oxidized nitrogen compounds from aqueous samples, which is based on liquid-liquid partitioning, is time consuming and contamination prone. We describe a solid-phase rapid chromatographic method for recovery of (NO2-)-N-15 and NO3- produced by nitrification in aqueous samples. Compared to liquid-liquid partitioning, the advantages are significantly reduced processing time and reduced potential for contamination. Typical results are presented for the tidal, freshwater reaches of the James River estuary

Development And Verification Of A Model For The Population Dynamics Of The Protistan Parasite, Perkinsus Marinus, Within Its Host, The Eastern Oyster, Crassostrea Virginica, In Chesapeake Bay

A simulation model was developed to investigate the population dynamics of the protistan parasite, Perkinsus marinus, within its host, the eastern oyster, Crassostrea virginica. The main objective was to evaluate the relationship between P. marinus population dynamics and environmental conditions in order to predict the onset and termination of P. marinus epizootics in Chesapeake Bay oyster populations. Information derived from laboratory experiments and from direct field observations of P. marinus dynamics in the James River for the years 1990 to 1993 was utilized for model development. The individual-based model, which is driven by temperature and salinity, tracks the average within-host parasite density at a daily time step. The model was verified against monthly field observations of parasite abundance for the years 1994 to 1999 at three oyster bars located along a 0-20-ppt salinity gradient in the James River, Virginia. Simulated populations exhibited a distinct seasonal periodicity with annual density maximums and minimums occurring in October and May, respectively. Parasite abundance decreased in an upriver direction with decreasing salinity along the salinity gradient. Predicted parasite densities significantly correlated with actual observed densities at all three locations; however, the strength of the association decreased from bar to bar in an upriver direction. Predicted parasite abundance exhibited a dynamic steady state for all three oyster bars during the 6-year time series. Simulations run without the input of a midsummer transmission event resulted in a destabilization and extinction of the parasite from the oyster population located farthest upriver. but the parasite remained enzootic during the six year simulation at the two lower river stations. This suggests that a single transmission event may be sufficient for P. marinus to become enzootic in specific year classes of oyster populations located in moderate to high salinity areas, while periodic transmission events are required for the parasite to persist in low salinity areas. Simulation results suggest that fairly accurate quantitative predictions of P. marinus abundance can be made using in situ temperature and salinity data and a relatively simple model

Spatial and temporal bacterioplankton dynamics during destratification of the James River estuary, Virginia, USA

Bacterioplankton abundance and production were examined over the course of a destratification event in the lower James River, Virginia, USA, Goals of the study were to determine if destratification would influence temporal patterns of bacterioplankton parameters and relationships between bacterioplankton and other biological and abiological parameters. Mean bacterial abundance grouped over stations did not change over the course of the study, and were characterized by much smaller coefficients of variation than all other planktonic constituents. However, bacterial production measured by H-3-thymidine (H-3-Tdr) incorporation decreased significantly from a stratified (324 mu g Cl-1 d(-1)) to a destratified (187 mu g Cl-1 d(-1)) hydrography. The importance of bacterial-autotrophic coupling was also suggested from oxygen metabolism experiments, which indicated substrate limitation of bacteria, and the existence of a rapidly utilized photosynthetically produced substrate. Correlative relationships between bacterial parameters with chlorophyll a were significant during stratified hydrography, but diminished or became non-significant during destratified hydrography. Estimates of microzooplankton grazing rates upon bacteria decreased significantly during the onset of destratification. During the stratified hydrography, bacterial parameters displayed highly significant negative correlations to ammonium, however these relationships disappeared during the destratified hydrography. Results of this study indicate that destratification changes the trophic interactions of bacteria within the microbial loop, however these changes are not necessarily reflected by temporal patterns of bacterial abundance

Development of a process-based nitrogen mass balance model for a Virginia (USA) Spartina alterniflora salt marsh: implications for net DIN flux

Primary production is nitrogen limited in most salt marshes with the possible exception of those impacted by high anthropogenic inputs of nitrogen. It is hypothesized that mature salt marshes which receive only small inputs of \u27new\u27 nitrogen from the atmosphere, surface water runoff, groundwater, tidal creek, and nitrogen-fixation will have a conservative nitrogen cycle. We have developed a process-based N mass balance model for a short-term Spartina alterniflora marsh in Virginia, USA. Data for the model included rates of gross mineralization, nitrification, denitrification, nitrogen fixation, above- and belowground macrophyte production, and benthic microalgal production. The annual balance between sources (mineralization, nitrogen fixation, tidal creek flux, atmospheric deposition, and sediment input) and sinks (above- and belowground macrophyte uptake, sediment microalgal uptake, sediment burial, microbial immobilization, denitrification, and nitrification) of dissolved inorganic nitrogen (DIN) was determined for both interior S. alterniflora-vegetated sites and unvegetated creek bank sites. Sediment/water exchanges of DIN species, predicted by results of the mass balance analysis, were compared to measured exchanges. Annually, sources and sinks of DIN in the vegetated marsh were in close balance. The vegetated. marsh imported DIN from the adjacent creek during most of the year; the unvegetated creek bank exported NH4+ to overlying tidal water during July and imported NH4+ during other seasons. The net flux of DIN was 5.7 g N m(-2) yr(-1) from overlying water into the marsh; however, this flux was small relative to rates of internal N-cycling processes. The sediment NH,+ pool turned over rapidly as a result of the high rate of gross mineralization (84 g N m(-2) yr(-1)). Other microbial N-cycling rates were low (0.6 to 4 g N m(-2) yr(-1)). The NH4+ supplied by mineralization was more than sufficient to support both macrophyte (33 g N m(-2) yr(-1)) and benthic microalgal (5 g N m(-2) yr(-1)) uptake. We propose that in order to maintain steady state in the system approximately half of the DIN mineralized is immobilized into a readily remineralizable particulate organic N pool Since mineralization and macrophyte uptake are temporally out of phase, the labile organic N pool may serve to temporarily sequester NH4+ until it is required for plant uptake

Factors Influencing the Emergence and Spread of HIV Drug Resistance Arising from Rollout of Antiretroviral Pre-Exposure Prophylaxis (PrEP)

Background: The potential for emergence and spread of HIV drug resistance from rollout of antiretroviral (ARV) pre-exposure prophylaxis (PrEP) is an important public health concern. We investigated determinants of HIV drug resistance prevalence after PrEP implementation through mathematical modeling. Methodology: A model incorporating heterogeneity in age, gender, sexual activity, HIV infection status, stage of disease, PrEP coverage/discontinuation, and HIV drug susceptibility, was designed to simulate the impact of PrEP on HIV prevention and drug resistance in a sub-Saharan epidemic. Principal Findings: Analyses suggest that the prevalence of HIV drug resistance is influenced most by the extent and duration of inadvertent PrEP use in individuals already infected with HIV. Other key factors affecting drug resistance prevalence include the persistence time of transmitted resistance and the duration of inadvertent PrEP use in individuals who become infected on PrEP. From uncertainty analysis, the median overall prevalence of drug resistance at 10 years was predicted to be 9.2% (interquartile range 6.9%-12.2%). An optimistic scenario of 75% PrEP efficacy, 60% coverage of the susceptible population, and 5% inadvertent PrEP use predicts a rise in HIV drug resistance prevalence to only 2.5% after 10 years. By contrast, in a pessimistic scenario of 25% PrEP efficacy, 15% population coverage, and 25% inadvertent PrEP use, resistance prevalence increased to over 40%. Conclusions: Inadvertent PrEP use in previously-infected individuals is the major determinant of HIV drug resistance prevalence arising from PrEP. Both the rate and duration of inadvertent PrEP use are key factors. PrEP rollout programs should include routine monitoring of HIV infection status to limit the spread of drug resistance. © 2011 Abbas et al

Measurement of the Forward-Backward Asymmetry in the B -> K(*) mu+ mu- Decay and First Observation of the Bs -> phi mu+ mu- Decay

We reconstruct the rare decays $B^+ \to K^+\mu^+\mu^-$, $B^0 \to K^{*}(892)^0\mu^+\mu^-$, and $B^0_s \to \phi(1020)\mu^+\mu^-$ in a data sample corresponding to $4.4 {\rm fb^{-1}}$ collected in $p\bar{p}$ collisions at $\sqrt{s}=1.96 {\rm TeV}$ by the CDF II detector at the Fermilab Tevatron Collider. Using $121 \pm 16$ $B^+ \to K^+\mu^+\mu^-$ and $101 \pm 12$ $B^0 \to K^{*0}\mu^+\mu^-$ decays we report the branching ratios. In addition, we report the measurement of the differential branching ratio and the muon forward-backward asymmetry in the $B^+$ and $B^0$ decay modes, and the $K^{*0}$ longitudinal polarization in the $B^0$ decay mode with respect to the squared dimuon mass. These are consistent with the theoretical prediction from the standard model, and most recent determinations from other experiments and of comparable accuracy. We also report the first observation of the $B^0_s \to \phi\mu^+\mu^- decay and measure its branching ratio${\mathcal{B}}(B^0_s \to \phi\mu^+\mu^-) = [1.44 \pm 0.33 \pm 0.46] \times 10^{-6}$using$27 \pm 6$signal events. This is currently the most rare$B^0_s$ decay observed.Comment: 7 pages, 2 figures, 3 tables. Submitted to Phys. Rev. Let

Measurements of the properties of Lambda_c(2595), Lambda_c(2625), Sigma_c(2455), and Sigma_c(2520) baryons

We report measurements of the resonance properties of Lambda_c(2595)+ and Lambda_c(2625)+ baryons in their decays to Lambda_c+ pi+ pi- as well as Sigma_c(2455)++,0 and Sigma_c(2520)++,0 baryons in their decays to Lambda_c+ pi+/- final states. These measurements are performed using data corresponding to 5.2/fb of integrated luminosity from ppbar collisions at sqrt(s) = 1.96 TeV, collected with the CDF II detector at the Fermilab Tevatron. Exploiting the largest available charmed baryon sample, we measure masses and decay widths with uncertainties comparable to the world averages for Sigma_c states, and significantly smaller uncertainties than the world averages for excited Lambda_c+ states.Comment: added one reference and one table, changed order of figures, 17 pages, 15 figure