Visible-NIR ‘point’ spectroscopy in postharvest fruit and vegetable assessment: The science behind three decades of commercial use

The application of visible (Vis; 400–750 nm) and near infrared red (NIR; 750–2500 nm) region spectroscopy to assess fruit and vegetables is reviewed in context of ‘point’ spectroscopy, as opposed to multi- or hyperspectral imaging. Vis spectroscopy targets colour assessment and pigment analysis, while NIR spectroscopy has been applied to assessment of macro constituents (principally water) in fresh produce in commercial practice, and a wide range of attributes in the scientific literature. This review focusses to key issues relevant to the widespread implementation of Vis-NIR technology in the fruit sector. A background to the concepts and technology involved in the use of Vis-NIR spectroscopy is provided and instrumentation for in-field and in-line applications, which has been available for two and three decades, respectively, is described. A review of scientific effort is made for the period 2015 - February 2020, in terms of the application areas, instrumentation, chemometric methods and validation procedures, and this work is critiqued through comparison to techniques in commercial use, with focus to wavelength region, optical geometry, experimental design, and validation procedures. Recommendations for future research activity in this area are made, e.g., application development with consideration of the distribution of the attribute of interest in the product and the matching of optically sampled and reference method sampled volume; instrumentation comparisons with consideration of repeatability, optimum optical geometry and wavelength range). Recommendations are also made for reporting requirements, viz. description of the application, the reference method, the composition of calibration and test populations, chemometric reporting and benchmarking to a known instrument/method, with the aim of maximising useful conclusions from the extensive work being done around the world

The potential for modification in cloning and vitrification technology to enhance genetic progress in beef cattle in Northern Australia

AbstractRecent advances in embryology and related research offer considerable possibilities to accelerate genetic improvement in cattle breeding. Such progress includes optimization and standardization of laboratory embryo production (in vitro fertilization – IVF), introduction of a highly efficient method for cryopreservation (vitrification), and dramatic improvement in the efficiency of somatic cell nuclear transfer (cloning) in terms of required effort, cost, and overall outcome. Handmade cloning (HMC), a simplified version of somatic cell nuclear transfer, offers the potential for relatively easy and low-cost production of clones. A potentially modified method of vitrification used at a centrally located laboratory facility could result in cloned offspring that are economically competitive with elite animals produced by more traditional means. Apart from routine legal and intellectual property issues, the main obstacle that hampers rapid uptake of these technologies by the beef cattle industry is a lack of confidence from scientific and commercial sources. Once stakeholder support is increased, the combined application of these methods makes a rapid advance toward desirable traits (rapid growth, high-quality beef, optimized reproductive performance) a realistic goal. The potential impact of these technologies on genetic advancement in beef cattle herds in which improvement of stock is sought, such as in northern Australia, is hard to overestimate

High-cut harvesting of maize stover and genotype choice can provide improved feed for ruminants and stubble for conservation agriculture

In smallholder crop–livestock systems where maize (Zea mays L.) is a staple cereal, the stover is usually an important but low-quality ruminant feed. Maize stover has various competing uses, and optimal allocation of stover, particularly for forage and mulch, is essential for improving whole-farm productivity and sustainability. Knowledge that feed quality increases with height in maize stover provides opportunities. An experiment investigated the effects of a high cutting height of stover at grain harvest (cut at two internodes below the lowest ear) on the yields and feed quality of the upper and lower stover (stubble) fractions. Measurements were made on six maize genotypes at two sites during two cropping seasons in Ethiopia. The upper stover fraction (USF) on average comprised 674 g kg–1 of the entire stover and was also substantially higher (P <.001) than the lower stover fraction (LSF) in in vitro dry matter digestibility (527 vs. 450 g kg−1 dry matter [DM]) and total N concentrations (8.8 vs. 6.2 g kg−1 DM) and was lower in fiber. Stems (including leaf sheath and tassel), husks (including shank), and leaf blade comprised 484, 310, and 206 g kg−1 of the USF, respectively. Yields and feed quality of stover varied among genotypes and environments. Use of an USF can provide a feedstuff of increased nutritional quality for ruminants, but the efficacy of the LSF for mulch requires investigation. In conclusion, a simple management change to harvest maize stover at higher stubble height combined with use of appropriate genotypes can provide higher-quality feed while leaving stubble for conservation agriculture

Variations in seed and post-harvest residue yields and residues quality of common bean ( Phaseolus vulgaris L.) as a ruminant feedstuff

Common bean is widely grown as a food legume and the post-harvest crop residues (CR) (i.e. haulm + pod wall (HPW)) are valuable as ruminant feedstuffs. The yields and constituents indicative of nutritive value for ruminants of the HPW from a wide range of common bean genotypes (G) were examined at 4 trial sites in Ethiopia during the 2013 main cropping season to assess the extent of genetic variation among G for simultaneous improvement of both HPW attributes and seed yield. Attributes measured were seed and HPW yields and the amounts of the morphological components, their concentrations of total nitrogen (N), neutral detergent fibre (aNDFom) and acid detergent fibre (ADFom), and the dry matter digestibility (DMD). The constituents were measured using near infrared spectroscopy (NIRS) and calibrations based on a large set of reference tropical forages and CR (including common bean), and were validated against other CR reference samples. These CR quality attributes were very well predicted with R2v and RPDv ranging from 0.90 to 0.98 and 3.13–7.36, respectively. There was considerable variation in yields of HPW and seed, and in the proportions and attributes of the HPW fractions among the common bean G. Trial site means for yields of HPW and seed ranged from 0.74 to 2.54 t/ha and 0.79–2.62 t/ha, respectively while for N, aNDFom and ADFom concentrations and DMD of HPW ranged from 7.7 to 11.4 g/kg DM, 648–739 g/kg DM, 502–585 g/kg DM, and 467–570 g/kg DM, respectively. Environment (E), as represented by site, generally affected the yields of HPW and seed (P < 0.001) and nutritive value of the HPW fractions (P < 0.05) as feedstuffs. Seed yield was positively correlated with HPW yield both within and across trial sites (r = 0.92; P < 0.0001), but in general seed yield was not related to the N concentration. Across all sites, seed yield was positively correlated (r = 0.68; P < 0.0001) with haulm DMD. Although this correlation may be due to variation associated with E rather than G, it is nevertheless important in that selection for higher seed yield is likely to also increase metabolisable energy (ME) content of the HPW. There were G x E interaction effects on yields of HPW (P < 0.0001) and seed (P = 0.011), but these were generally less important than E effects which explained 52–58% of the variation. In conclusion the study demonstrated that it is possible to identify genotypes such as ECAB0081 which combine high yields of both seed and HPW, and with HPW attributes which improve their quality as ruminant feedstuffs

Effect of a Low–Resource-Intensive Lifestyle Modification Program Incorporating Gymnasium-Based and Home-Based Resistance Training on Type 2 Diabetes Risk in Australian Adults

OBJECTIVE—The purpose of this study was to assess the effectiveness of a low–resource-intensive lifestyle modification program incorporating resistance training and to compare a gymnasium-based with a home-based resistance training program on diabetes diagnosis status and risk

Impacts of Climate Change on indirect human exposure to pathogens and chemicals from agriculture

Objective: Climate change is likely to affect the nature of pathogens and chemicals in the environment and their fate and transport. Future risks of pathogens and chemicals could therefore be very different from those of today. In this review, we assess the implications of climate change for changes in human exposures to pathogens and chemicals in agricultural systems in the United Kingdom and discuss the subsequent effects on health impacts. Data sources: In this review, we used expert input and considered literature on climate change ; health effects resulting from exposure to pathogens and chemicals arising from agriculture ; inputs of chemicals and pathogens to agricultural systems ; and human exposure pathways for pathogens and chemicals in agricultural systems. Data synthesis: We established the current evidence base for health effects of chemicals and pathogens in the agricultural environment ; determined the potential implications of climate change on chemical and pathogen inputs in agricultural systems ; and explored the effects of climate change on environmental transport and fate of different contaminant types. We combined these data to assess the implications of climate change in terms of indirect human exposure to pathogens and chemicals in agricultural systems. We then developed recommendations on future research and policy changes to manage any adverse increases in risks. Conclusions: Overall, climate change is likely to increase human exposures to agricultural contaminants. The magnitude of the increases will be highly dependent on the contaminant type. Risks from many pathogens and particulate and particle-associated contaminants could increase significantly. These increases in exposure can, however, be managed for the most part through targeted research and policy changes

Chromosomes 4 and 8 implicated in a genome wide SNP linkage scan of 762 prostate cancer families collected by the ICPCG

BACKGROUND In spite of intensive efforts, understanding of the genetic aspects of familial prostate cancer (PC) remains largely incomplete. In a previous microsatellite‐based linkage scan of 1,233 PC families, we identified suggestive evidence for linkage (i.e., LOD ≥ 1.86) at 5q12, 15q11, 17q21, 22q12, and two loci on 8p, with additional regions implicated in subsets of families defined by age at diagnosis, disease aggressiveness, or number of affected members. METHODS In an attempt to replicate these findings and increase linkage resolution, we used the Illumina 6000 SNP linkage panel to perform a genome‐wide linkage scan of an independent set of 762 multiplex PC families, collected by 11 International Consortium for Prostate Cancer Genetics (ICPCG) groups. RESULTS Of the regions identified previously, modest evidence of replication was observed only on the short arm of chromosome 8, where HLOD scores of 1.63 and 3.60 were observed in the complete set of families and families with young average age at diagnosis, respectively. The most significant linkage signals found in the complete set of families were observed across a broad, 37 cM interval on 4q13–25, with LOD scores ranging from 2.02 to 2.62, increasing to 4.50 in families with older average age at diagnosis. In families with multiple cases presenting with more aggressive disease, LOD scores over 3.0 were observed at 8q24 in the vicinity of previously identified common PC risk variants, as well as MYC , an important gene in PC biology. CONCLUSIONS These results will be useful in prioritizing future susceptibility gene discovery efforts in this common cancer. Prostate 72:410–426, 2012. © 2011 Wiley Periodicals, Inc.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/90245/1/21443_ftp.pd

Analysis of Xq27-28 linkage in the international consortium for prostate cancer genetics (ICPCG) families.

BACKGROUND: Genetic variants are likely to contribute to a portion of prostate cancer risk. Full elucidation of the genetic etiology of prostate cancer is difficult because of incomplete penetrance and genetic and phenotypic heterogeneity. Current evidence suggests that genetic linkage to prostate cancer has been found on several chromosomes including the X; however, identification of causative genes has been elusive. METHODS: Parametric and non-parametric linkage analyses were performed using 26 microsatellite markers in each of 11 groups of multiple-case prostate cancer families from the International Consortium for Prostate Cancer Genetics (ICPCG). Meta-analyses of the resultant family-specific linkage statistics across the entire 1,323 families and in several predefined subsets were then performed. RESULTS: Meta-analyses of linkage statistics resulted in a maximum parametric heterogeneity lod score (HLOD) of 1.28, and an allele-sharing lod score (LOD) of 2.0 in favor of linkage to Xq27-q28 at 138 cM. In subset analyses, families with average age at onset less than 65 years exhibited a maximum HLOD of 1.8 (at 138 cM) versus a maximum regional HLOD of only 0.32 in families with average age at onset of 65 years or older. Surprisingly, the subset of families with only 2-3 affected men and some evidence of male-to-male transmission of prostate cancer gave the strongest evidence of linkage to the region (HLOD = 3.24, 134 cM). For this subset, the HLOD was slightly increased (HLOD = 3.47 at 134 cM) when families used in the original published report of linkage to Xq27-28 were excluded. CONCLUSIONS: Although there was not strong support for linkage to the Xq27-28 region in the complete set of families, the subset of families with earlier age at onset exhibited more evidence of linkage than families with later onset of disease. A subset of families with 2-3 affected individuals and with some evidence of male to male disease transmission showed stronger linkage signals. Our results suggest that the genetic basis for prostate cancer in our families is much more complex than a single susceptibility locus on the X chromosome, and that future explorations of the Xq27-28 region should focus on the subset of families identified here with the strongest evidence of linkage to this region.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are