Evaluation of Amino Acid Composition as a Geochronometer in Buried Soils on Mount Kenya, East Africa

A sequence of surface and buried paleosols from the slopes of Mount Kenya, East Africa, has been identified and dated by radiocarbon and amino acid dating techniques in order to elucidate the Quaternary history of the area. Buried paleosols vary in radiocarbon age from 900 to > 40,000 yrs BP. They have developed in glacial and periglacial deposits of variable texture, consisting of a high percentage of clasts of phonolite, basalt and syenite. All but two paleosols are located in the Afroalpine zone (above 3200 m). D/L ratios of amino acids in Ab horizons were determined in order to establish their reliability for relative age dating. Alanine, aspartic acid, glutamic acid, leucine, valine, and phenylalanine were routinely analyzed. Aspartic acid, as in other cases, proved reliable yielding remarkably consistent results, with higher ratios corresponding to increasing age. Other acids analyzed showed distinct trends, although not as convincing as aspartic acid. In most cases, the aspartic acid ratio/ age relationships were supported by radiocarbon dates. D/L ratios of aspartic acid varied from approximately 0.07 for modern samples, to approximately 0.45 in samples > 40,000 years old.On a identifié et daté, au radiocarbone et à l'aide de techniques de datations à l'acide aminé, des paléosols enfouis et de surface afin de comprendre l'évolution quaternaire de la région. Les datations au radiocarbone des paléosols enfouis varient de 900 à plus de 40 000 BP. Les sols se sont développés dans des dépôts glaciaires et périglaciaires de différentes textures, constitués de fragments de roches détritiques, de phonolite, de basalte et de syénite. Tous les paléosols, sauf deux, sont situés dans la zone afroalpine (au-dessus de 3200 m). On a déterminé par racémisation les rapports D/L des acides aminés dans les horizons Ab en vue d'évaluer leur fiabilité pour la datation des âges relatifs. On a fait l'analyse de l'alaline, de l'acide aspartique, de l'acide glutamique, de la leucine, de la valine et du phénylalaline. L'acide aspartique, comme dans d'autres cas, a donné des résultats particulièrement satisfaisants, les quotients plus élevés correspondant aux âges les plus anciens. D'autres acides montraient des tendances bien distinctes, mais moins convaincantes que dans le cas de l'acide aspartique. Ainsi, dans la plupart des cas, les relations quotients/âges de l'acide aspartique étaient corroborées par les datations au radiocarbone. Les rapports D/L de l'acide aspartique variaient d'environ 0,07 pour les échantillons modernes à environ 0,45 pour les échantillons de plus de 40 000 ans.Eine Série von an der Oberflâche Negenden und begrabenen Palàobôden von den Hàngen des Mount Kenya, Ost-Afrika, wurde mittels Radiokarbon- und Aminosâuredatierungs-techniken identifiziert und datiert, um die Geschichte dieses Gebiets im Quaternàr zu erhellen. Das durch Radiokarbon bestimmte Alter der begrabenen Palàobôden variiert von 900 bis > 40,000 Jahren v.u.Z. Dièse Bôden haben sich in glazialen und periglazialen Ablagerungen verschiedener Beschaffenheit entwickelt, welche zu einem hohen Prozentsatz aus Trùmmern von Phonolith, Basait und Syenit bestehen. AuBer zweien befinden sich aile Palàobôden in der afroalpinen Zone (oberhalb 3200 m). Die D/L Anteile der Aminosâuren in den Ab-Horizonten wurden bestimmt, um ihre Verlâpiichkeit bei der relativen Altersbestimmung festzustellen. Alamin, aspartische Sàure, Glutamin-Sàure, Leuzin, Valin und Phenylalanin wurden laufend analysiert. Wie in anderen Fallen erwies sich die aspartische Sàure als verlàpiich, indem sie bemerkenswert bestàndige Ergebnisse ergab, bei denen die hôheren Quotienten dem hôheren Alter entsprachen. Andere analysierte Sàuren zeigten ausgepràgte Trends, wenn auch nicht so ùberzeugend wie die aspartische Sàure. In den meisten Fallen wurden die Beziehungen Quotient/Alter der aspartischen Sàure durch Radiokarbondatierungen gestùtzt. Die D/L Anteile der aspartischen Sàure variierten von ungefâhr 0.07 fur moderne Proben bis ungefâhr 0.45 in Proben, die > 40,000 Jahre ait sind

Stratigraphy, geochemistry and palaeomagnetism of late quaternary bedrock and paleosols, Karisoke Area, Virunga Mountains, Northwestern Rwanda

Ein rezenter Boden und zwei begrabene Paläoböden, Einheiten II-III-IV (oberer) und IV (unterer)-V, liefern wichtige Informationen über Paläoklima und Abflußverhältnisse in den Virunga-Bergen von trockeneren zu feuchteren paläoklimatischen Phasen des Spätglazials bis zu mittleren postglazialen Zeiten. Zusammenfassend betrachtet, weist die stratigraphische Abfolge zunächst auf eine Verwitterungsperiode des Festgesteins hin, der eine Phase folgt, in der tuffige Schichten abgelagert wurden. Die Zeit war von einer Verwitterung unter trockeneren und vielleicht kälteren Bedingungen begleitet. Später, während des letzten Glazials, kam es bei verstärkter Aktivität der Flüsse zur Sedimentation von Schwemmlandablagerungen, die von einer dünnen Tuff-Schicht überdeckt wurden. Diese Sedimente sind intensiver verwittert als die liegenden Schichten. Der rezente Boden zeigt eine vergleichsweise geringe Verwitterung mobiler Elemente, was darauf hindeutet, daß die Klimaverhältnisse im späten Mittel-Holozän und Spät-Holozän etwas trockener und vielleicht kühler waren als im Früh-Holozän. Die Geochemie der drei Böden zeigt eine bedeutende Abnahme von Na, Ca und K im mittleren Paläoböden im Vergleich zum älteren Paläoböden und zu den rezenten Böden. Eisen als ein wichtiger Indikator für das Paläoklima deutet daraufhin, daß die mittleren Einheiten II und III des oberen Paläobodens unter feuchteren Klimabedingungen als heute entstanden sind. Die Radiokarbon-Datierungen des mittleren Paläobodens zeigen, daß dieser Boden einer sub-aerischen Verwitterung vom Kalambo-Interstadial (» 25000 Jahre vor heute) bis zum Mittel-Holozän ausgesetzt war. Die gesamte Verwitterung im mittleren Abschnitt ist zu weit fortgeschritten und während des Holozäns entstanden. Die relativ hohe Konzentration von Th in den anstehenden Festgesteinen, Tuffen, Schwemmlandsedimenten und Hangrutschmassen zeigt, daß Th die Quelle der Radioaktivität ist, von der andere Autoren aus den Virunga-Bergen berichten.researc

On Upward Drawings of Trees on a Given Grid

Computing a minimum-area planar straight-line drawing of a graph is known to be NP-hard for planar graphs, even when restricted to outerplanar graphs. However, the complexity question is open for trees. Only a few hardness results are known for straight-line drawings of trees under various restrictions such as edge length or slope constraints. On the other hand, there exist polynomial-time algorithms for computing minimum-width (resp., minimum-height) upward drawings of trees, where the height (resp., width) is unbounded. In this paper we take a major step in understanding the complexity of the area minimization problem for strictly-upward drawings of trees, which is one of the most common styles for drawing rooted trees. We prove that given a rooted tree $T$ and a $W\times H$ grid, it is NP-hard to decide whether $T$ admits a strictly-upward (unordered) drawing in the given grid.Comment: Appears in the Proceedings of the 25th International Symposium on Graph Drawing and Network Visualization (GD 2017

A Hybrid Lagrangian Variation Method for Bose-Einstein Condensates in Optical Lattices

Solving the Gross--Pitaevskii (GP) equation describing a Bose--Einstein condensate (BEC) immersed in an optical lattice potential can be a numerically demanding task. We present a variational technique for providing fast, accurate solutions of the GP equation for systems where the external potential exhibits rapid varation along one spatial direction. Examples of such systems include a BEC subjected to a one--dimensional optical lattice or a Bragg pulse. This variational method is a hybrid form of the Lagrangian Variational Method for the GP equation in which a hybrid trial wavefunction assumes a gaussian form in two coordinates while being totally unspecified in the third coordinate. The resulting equations of motion consist of a quasi--one--dimensional GP equation coupled to ordinary differential equations for the widths of the transverse gaussians. We use this method to investigate how an optical lattice can be used to move a condensate non--adiabatically.Comment: 16 pages and 1 figur

X chromosome effects and their interactions with mitochondrial effects

We report a simple and rapid method for detecting additive genetic variance due to X-linked loci in the absence of marker data for this chromosome. We examined the interaction of this method with an established method for detecting mitochondrial linkage (another source of sex-asymmetric genetic covariance). When applied to data from the Collaborative Study on the Genetics of Alcoholism, this method found evidence of X-chromosomal linkage for one continuous trait (ntth1) and one discrete trait (SPENT). Evidence of mitochondrial contribution was found for one discrete trait (CRAVING) and three continuous traits (ln(CIGPKYR), ecb21, and tth1). Results for ntth1 suggest that methods that do not also allow for male-female heterogeneity in environmental variance may be overly conservative in detection of X-chromosomal effects

Possible mineral contributions to the diet and health of wild chimpanzees in three East African forests

For financial support, the authors acknowledge the Mohamed bin Zayed Species Conservation Fund grant numbers 0925272, 10251055, 11252562, 12254904, the Royal Zoological Society of Scotland, the Leverhulme Trust grant number ECF‐2013‐507, and the Boise Fund.We present new data on the ingestion of minerals from termite mound soil by East African chimpanzees (Pan troglodytes schweinfurthii) living in the Budongo Forest Reserve, Uganda, the Gombe National Park and the Mahale Mountains National Park, Tanzania. Termite mound soil is here shown to be a rich source of minerals, containing high concentrations of iron and aluminum. Termite mound soil is not, however, a source of sodium. The concentrations of iron and aluminum are the highest yet found in any of the mineral sources consumed. Levels of manganese and copper, though not so high as for iron and aluminum, are also higher than in other dietary sources. We focus on the contribution of termite mound soil to other known sources of mineral elements consumed by these apes, and compare the mineral content of termite soil with that of control forest soil, decaying wood, clay, and the normal plant‐based chimpanzee diet at Budongo. Samples obtained from Mahale Mountains National Park and Gombe National Park, both in Tanzania, show similar mineral distribution across sources. We suggest three distinct but related mechanisms by which minerals may come to be concentrated in the above‐mentioned sources, serving as potentially important sources of essential minerals in the chimpanzee diet.PostprintPeer reviewe

A Quantitative Trait Locus on Chromosome 5p Influences D-Dimer Levels in the San Antonio Family Heart Study

Background. D-dimer is associated with increasing severity of atherosclerosis and with increased risk of a cardiovascular disease (CVD). Methods and Results. To better understand this risk factor, we performed a genome scan on 803 (301 males and 502 females) Mexican Americans in the San Antonio Family Heart Study (SAFHS). The SAFHS is ideal for the discovery of quantitative trait loci (QTLs) influencing CVD because CVD risk factors are prevalent in Mexican Americans of San Antonio and because the study design involves large families, which is optimal for QTL discovery. D-dimer levels were normalized in our study. We found that D-dimer levels were heritable, at about 23% heritability (P ≈ .00001). In a linkage analysis employing 432 microsatellite markers, we found strong evidence of a QTL on chromosome 5p with a lod score of 3.32 at 21 centiMorgans (cM). We also found suggestive evidence of a QTL on chromosome 2q with a lod score of 2.33 at 207 cM. Conclusions. To our knowledge, the putative QTL on chromosome 5p is novel. The possible QTL on chromosome 2q is discussed in relation to a recent report of linkage of a related hemostatic factor to the same location. These results warrant further investigation

Biostratigraphic Evidence Relating to the Age-Old Question of Hannibal's Invasion of Italy, I: History and Geological Reconstruction

Controversy over the alpine route that Hannibal of Carthage followed from the Rhône Basin into Italia has raged amongst classicists and ancient historians for over two millennia. The motivation for identifying the route taken by the Punic Army through the Alps lies in its potential for identifying sites of historical archaeological significance and for the resolution of one of history's most enduring quandaries. Here, we present stratigraphic, geochemical and microbiological evidence recovered from an alluvial floodplain mire located below the Col de la Traversette (~3000 m asl—above sea level) on the French/Italian border that potentially identifies the invasion route as the one originally proposed by Sir Gavin de Beer (de Beer 1974). The dated layer is termed the MAD bed (mass animal deposition) based on disrupted bedding, greatly increased organic carbon and key/specialized biological components/compounds, the latter reported in Part II of this paper. We propose that the highly abnormal churned up (bioturbated) bed was contaminated by the passage of Hannibal's animals, possibly thousands, feeding and watering at the site, during the early stage of Hannibal's invasion of Italia (218 bc)

Biostratigraphic Evidence Relating to the Age-Old Question of Hannibal's Invasion of Italy, II: Chemical Biomarkers and Microbial Signatures

Open access article. Creative Commons Attribution 4.0 International License (CC BY 4.0) appliesAs discussed in Part I, a large accumulation of mammalian faeces at the mire site in the upper Guil Valley near Mt. Viso, dated to 2168 cal 14C yr., provides the first evidence of the passage of substantial but indeterminate numbers of mammals within the time frame of the Punic invasion of Italia. Specialized organic biomarkers bound up in a highly convoluted and bioturbated bed constitute an unusual anomaly in a histosol comprised of fibric and hemist horizons that are usually expected to display horizontal bedding. The presence of deoxycholic acid and ethylcoprostanol derived from faecal matter, coupled with high relative numbers of Clostridia 16S rRNA genes, suggests a substantial accumulation of mammalian faeces at the site over 2000 years ago. The results reported here constitute the first chemical and biological evidence of the passage of large numbers of mammals, possibly indicating the route of the Hannibalic army at this time. Combined with the geological analysis reported in Part I, these data provide a background supporting the need for further historical archaeological exploration in this area.Ye

PARP-3 and APLF function together to accelerate nonhomologous end joining

PARP-3 is a member of the ADP-ribosyl transferase superfamily of unknown function. We show that PARP-3 is stimulated by DNA double-strand breaks (DSBs) in vitro and functions in the same pathway as the poly (ADP-ribose)-binding protein APLF to accelerate chromosomal DNA DSB repair. We implicate PARP-3 in the accumulation of APLF at DSBs and demonstrate that APLF promotes the retention of XRCC4/DNA ligase IV complex in chromatin, suggesting that PARP-3 and APLF accelerate DNA ligation during nonhomologous end-joining (NHEJ). Consistent with this, we show that class switch recombination in Aplf−/− B cells is biased toward microhomology-mediated end-joining, a pathway that operates in the absence of XRCC4/DNA ligase IV, and that the requirement for PARP-3 and APLF for NHEJ is circumvented by overexpression of XRCC4/DNA ligase IV. These data identify molecular roles for PARP-3 and APLF in chromosomal DNA double-strand break repair reactions