Ancient DNA elucidates the lost world of western Indian Ocean giant tortoises and reveals a new extinct species from Madagascar

© 2023 The Authors. Published by the American Association for the Advancement of Science under a Creative Commons License. The published version can be accessed at the following link on the publisher’s website: https://www.science.org/doi/10.1126/sciadv.abq2574Before humans arrived, giant tortoises occurred on many western Indian Ocean islands. We combined ancient DNA, phylogenetic, ancestral range, and molecular clock analyses with radiocarbon and paleogeographic evidence to decipher their diversity and biogeography. Using a mitogenomic time tree, we propose that the ancestor of the extinct Mascarene tortoises spread from Africa in the Eocene to now-sunken islands northeast of Madagascar. From these islands, the Mascarenes were repeatedly colonized. Another out-of-Africa dispersal (latest Eocene/Oligocene) produced on Madagascar giant, large, and small tortoise species. Two giant and one large species disappeared c. 1000 to 600 years ago, the latter described here as new to science using nuclear and mitochondrial DNA. From Madagascar, the Granitic Seychelles were colonized (Early Pliocene) and from there, repeatedly Aldabra (Late Pleistocene). The Granitic Seychelles populations were eradicated and later reintroduced from Aldabra. Our results underline that integrating ancient DNA data into a multi-evidence framework substantially enhances the knowledge of the past diversity of island faunas.The work of C.K. and U.F. was supported by the Senckenberg Society for Nature Research (SGN), Germany. The work of E.G. and U.F. was partially supported by the Spanish Ministry of Science and Innovation through the project PID2019-105682RA-100/AEI/10.13039/501100011033. The work of V.D. was supported by the Alexander von Humboldt Foundation, Germany. F.I. was supported by the German Research Foundation (DFG, grant number IH 133/1-1).Published versio

Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a–b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per the editorial rules of Nature) was submitted to Nature, which on 18 October 2016 refused to publish it. As we think this problem is a very important one for zoological taxonomy, this text is published here exactly as submitted to Nature, followed by the list of the 493 taxonomists and collection-based researchers who signed it in the short time span from 20 September to 6 October 2016

Lost and found: rediscovery and systematics of the Northeast Indian snake Hebius pealii (Sclater, 1891)

We report the rediscovery of the keelback snake Hebius pealii after 129 years from Arunachal Pradesh in Northeast India. We designate a lectotype for the species, and provide the first description of a female, of colour in life, and aspects of its natural history. Multilocus phylogenetic analyses of two mitochondrial (1071 bp cytb, 508 bp 16s) and two nuclear (560 bp bdnf, 579 bp cmos) genes provides strong evidence for Hebius pealii being nested within the genus Herpetoreas instead of Hebius . We transfer this species to the genus Herpetoreas

Musicians in the marsh: a new species of music frog (Anura: Ranidae: Nidirana) from Arunachal Pradesh, India

© 2023 Magnolia Press.We describe a new species of ranid frog of the genus Nidirana from northeast India based on morphological, molecular and acoustic evidence. The new species is phenotypically distinct from its congeners by a combination of morphological characters: body robust with SVL 46.5–59.1 mm (n= 3) in adult males and SVL 60.6–66.0 mm (n= 2) in adult females; a pair of subgular vocal sacs and two patches of nuptial pad on the first finger in adult males; toe tips slightly dilated and oval; circum-marginal grooves present on all toes; dorsal skin with scattered small tubercles. A pale cream-coloured mid-dorsal line from the snout tip to the vent is present. Phylogenetically, the new species differs from its congeners by a genetic divergence of 3.4–8.0% and 7.7–12.4% in 16S and COI genes respectively. Furthermore, the new species can be differentiated from its congeners by its advertisement call, which consists of two different types of notes, call duration (0.58–0.92 s) and dominant frequency of the call (473.7 Hz). The discovery of a new species validates the presence of the genus Nidirana from India and emphasizes the importance of exploring specialized habitats such as marshlands, which are often overlooked.Published onlin

A taxonomic mystery for more than 180 years: the identity and systematic position of Brachysaura minor (HARDWICKE & GRAY, 1827)

Brachysaura is a monotypic genus of agamid lizard found in the Indian subcontinent; the identity and systematic position of B. minor has been long debated, and it has at times been subsumed into Agama, Charasia and Laudakia, with some authors suggesting affinities to Calotes. We constructed nuclear and mitochondrial phylogenetic trees including Brachysaura and allied agamid genera to resolve its phylogenetic position. We also compared osteology and external morphology with the genera Agama, Calotes and Laudakia. Hemipenial morphology was compared with Calotes and some other agamids from South Asia. Both nuclear and mitochondrial phylogenies demonstrate that Brachysaura is nested within the widespread South and Southeast Asian genus Calotes, with which it also shares certain external morphological, osteological and hemipenial characters. Adaptations to ground dwelling in Brachysaura minor has resulted in unique modifications to its body plan, which is likely why generic allocation has been long confused. This study also highlights the need for an integrated systematic approach to resolve taxonomic ambiguity in Asian agamids

A new species of green tree frog of the genus Gracixalus (Anura: Rhacophoridae) from the evergreen forest of Northeast India

Abstract We describe a new species of rhacophorid frog of the genus Gracixalus from northeast India based on molecular, morphological and acoustic evidence. The new species, formally described herein as Gracixalus patkaiensis sp. nov., is morphologically distinct from other congeners by a suite of morphological characters such as snout-vent length 23.6–26.5 mm in adult males; green dorsum with irregular brown spots; dorsal skin shagreened with numerous spinules; snout shape nearly acuminate in dorsal and ventral view; a prominent dark streak along the cranial margins; white reticulations along lateral side and ventrum distinct in life. Genetically, the new taxon is found to differ from all the recognized Gracixalus species by 4–14.8% divergence in the 16S mitochondrial gene. The discovery confirms the presence of genus Gracixalus from the Indian state of Arunachal Pradesh underlines the importance of biological exploration even in well-known protected areas of India

A new species of large-bodied Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from the Western Ghats of India

Abstract A new large (94–107mm SVL) species of gecko of the genus Hemidactylus is described from the drier parts of the Western Ghats of India. The new species is closely related to H. graniticolus, from which it can be distinguished based on dorsal pholidosis at mid-body, the structure of tubercles on the dorsum, dorsal pholidosis on the tail. The new species is also 6.6–7.2% divergent from H. graniticolus in the ND2 mitochondrial gene

A new species of large-bodied Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from the Western Ghats of India

Abstract A new large (94–107mm SVL) species of gecko of the genus Hemidactylus is described from the drier parts of the Western Ghats of India. The new species is closely related to H. graniticolus, from which it can be distinguished based on dorsal pholidosis at mid-body, the structure of tubercles on the dorsum, dorsal pholidosis on the tail. The new species is also 6.6–7.2% divergent from H. graniticolus in the ND2 mitochondrial gene

Discovery of a new species of kangaroo lizard (Squamata: Agamidae: Agasthyagama) from the southern Western Ghats of India

Abstract We describe a new species of Agasthyagama from Idukki district, Kerala, India. The new species is distinguished from its sister species Agasthyagama beddomii by a combination of scale characters and are also genetically different from each other with 11% uncorrected pairwise difference in ND2 gene and 3% in 16S gene. The two species are also geographically separated, the closest distributional records are approximately 80 km apart

Discovery of a new species of kangaroo lizard (Squamata: Agamidae: Agasthyagama) from the southern Western Ghats of India

Abstract We describe a new species of Agasthyagama from Idukki district, Kerala, India. The new species is distinguished from its sister species Agasthyagama beddomii by a combination of scale characters and are also genetically different from each other with 11% uncorrected pairwise difference in ND2 gene and 3% in 16S gene. The two species are also geographically separated, the closest distributional records are approximately 80 km apart