Effect of Cluster Formation on Isospin Asymmetry in the Liquid-Gas Phase Transition Region

Nuclear matter within the liquid-gas phase transition region is investigated in a mean-field two-component Fermi-gas model. Following largely analytic considerations, it is shown that: (1) Due to density dependence of asymmetry energy, some of the neutron excess from the high-density phase could be expelled into the low-density region. (2) Formation of clusters in the gas phase tends to counteract this trend, making the gas phase more liquid-like and reducing the asymmetry in the gas phase. Flow of asymmetry between the spectator and midrapidity region in reactions is discussed and a possible inversion of the flow direction is indicated.Comment: 9 pages,3 figures, RevTe

Atmospheric and oceanic impacts of Antarctic glaciation across the Eocene-Oligocene transition

The glaciation of Antarctica at the Eocene–Oligocene transition (approx. 34 million years ago) was a major shift in the Earth’s climate system, but the mechanisms that caused the glaciation, and its effects, remain highly debated. A number of recent studies have used coupled atmosphere–ocean climate models to assess the climatic effects of Antarctic glacial inception, with often contrasting results. Here, using the HadCM3L model, we show that the global atmosphere and ocean response to growth of the Antarctic ice sheet is sensitive to subtle variations in palaeogeography, using two reconstructions representing Eocene and Oligocene geological stages. The earlier stage (Eocene; Priabonian), which has a relatively constricted Tasman Seaway, shows a major increase in sea surface temperature over the Pacific sector of the Southern Ocean in response to the ice sheet. This response does not occur for the later stage (Oligocene; Rupelian), which has a more open Tasman Seaway. This difference in temperature response is attributed to reorganization of ocean currents between the stages. Following ice sheet expansion in the earlier stage, the large Ross Sea gyre circulation decreases in size. Stronger zonal flow through the Tasman Seaway allows salinities to increase in the Ross Sea, deep-water formation initiates and multiple feedbacks then occur amplifying the temperature response. This is potentially a model-dependent result, but it highlights the sensitive nature of model simulations to subtle variations in palaeogeography, and highlights the need for coupled ice sheet–climate simulations to properly represent and investigate feedback processes acting on these time scales

Adaptive Accelerated Molecular Dynamics (Ad-AMD) Revealing the Molecular Plasticity of P450cam

An extended accelerated molecular dynamics (AMD) methodology called adaptive AMD is presented. Adaptive AMD (Ad-AMD) is an efficient and robust conformational space sampling algorithm that is particularly-well suited to proteins with highly structured potential energy surfaces exhibiting complex, large-scale collective conformational transitions. Ad-AMD simulations of substrate-free P450cam reveal that this system exists in equilibrium between a fully and partially open conformational state. The mechanism for substrate binding depends on the size of the ligand. Larger ligands enter the P450cam binding pocket, and the resulting substrate-bound system is trapped in an open conformation via a population shift mechanism. Small ligands, which fully enter the binding pocket, cause an induced-fit mechanism, resulting in the formation of an energetically stable closed conformational state. These results are corroborated by recent experimental studies and potentially provide detailed insight into the functional dynamics and conformational behavior of the entire cytochrome-P450 superfamily

The UMIST Database for Astrochemistry 2012

We present the fifth release of the UMIST Database for Astrochemistry (UDfA). The new reaction network contains 6173 gas-phase reactions, involving 467 species, 47 of which are new to this release. We have updated rate coefficients across all reaction types. We have included 1171 new anion reactions and updated and reviewed all photorates. In addition to the usual reaction network, we also now include, for download, state-specific deuterated rate coefficients, deuterium exchange reactions and a list of surface binding energies for many neutral species. Where possible, we have referenced the original source of all new and existing data. We have tested the main reaction network using a dark cloud model and a carbon-rich circumstellar envelope model. We present and briefly discuss the results of these models

Spitzer detections of new dust components in the outflow of the Red Rectangle

We present Spitzer high spectral resolution IRS spectroscopy of three positions in the carbon-rich outflow of post-AGB star HD 44179, better known as the Red Rectangle. Surprisingly, the spectra show some strong unknown mid-infrared resonances, in the 13-20 micron range. The shape and position of these resonances varies with position in the nebula, and are not correlated with the PAH features. We conclude these features are due to oxygen-rich minerals, located in a region which is believed to be predominantly carbon-rich. We provide possible explanations for the presence of oxygen-rich dust in the carbon-rich outflows. Simple Mg-Fe-oxides are suggested as carriers of these unidentified features.Comment: accepted by ApJL; 5 pages; 4 figure

The time variation in infrared water-vapour bands in Mira variables

The time variation in the water-vapour bands in oxygen-rich Mira variables has been investigated using multi-epoch ISO/SWS spectra of four Mira variables in the 2.5-4.0 micron region. All four stars show H2O bands in absorption around minimum in the visual light curve. At maximum, H2O emission features appear in the ~3.5-4.0 micronm region, while the features at shorter wavelengths remain in absorption. These H2O bands in the 2.5-4.0 micron region originate from the extended atmosphere. The analysis has been carried out with a disk shape, slab geometry model. The observed H2O bands are reproduced by two layers; a `hot' layer with an excitation temperature of 2000 K and a `cool' layer with an excitation temperature of 1000-1400 K. The radii of the `hot' layer (R_hot) are ~1 R_* at visual minimum and 2 R_* at maximum, where R_* is a radius of background source of the model. The time variation of R_hot/R_* from 1 to 2 is attributed to the actual variation in the radius of the H2O layer. A high H2O density shell occurs near the surface of the star around minimum, and moves out with the stellar pulsation. This shell gradually fades away after maximum, and a new high H2O density shell is formed in the inner region again at the next minimum. Due to large optical depth of H2O, the near-infrared variability is dominated by the H2O layer, and the L'-band flux correlates with the area of the H2O shell. The infrared molecular bands trace the structure of the extended atmosphere and impose appreciable effects on near-infrared light curve of Mira variables.Comment: 15 pages, 16 figures, accepted by A&

Effects of accretion flow on the chemical structure in the inner regions of protoplanetary disks

We have studied the dependence of the profiles of molecular abundances and line emission on the accretion flow in the hot (\ga 100K) inner region of protoplanetary disks. The gas-phase reactions initiated by evaporation of the ice mantle on dust grains are calculated along the accretion flow. We focus on methanol, a molecule that is formed predominantly through the evaporation of warm ice mantles, to show how the abundance profile and line emission depend on the accretion flow. Our results show that some evaporated molecules keep high abundances only when the accretion velocity is large enough, and that methanol could be useful as a diagnostic of the accretion flow by means of ALMA observations at the disk radius of \la 10AU.Comment: 6 pages, 5 figures, Accepted for publication in A&

CH radio emission from heiles cloud 2 as a tracer of molecular cloud evolution

A mapping observation of the $J=1/2$ $\Lambda$-type doubling transition (3.3 GHz) of CH has been conducted toward Heiles Cloud 2 (HCL2) in the Taurus molecular cloud complex to reveal its molecular cloud-scale distribution. The observations were carried out with the Effelsberg 100 m telescope. The CH emission is found to be extended over the whole region of HCL2. It is brighter in the southeastern part, which encloses the TMC-1 cyanopolyyne peak than in the northwestern part. Its distribution extends continuously from the peak of the neutral carbon emission (CI peak) to the TMC-1 ridge, as if it were connecting the distributions of the [C I] and C$^{18}$O emissions. Since CH is an intermediate in gas-phase chemical reactions from C to CO, its emission should trace the transition region. The above distribution of the CH emission is consistent with this chemical behavior. Since the CH abundance is subject to the chemical evolutionary effect, the CH column density in HCL2 no longer follows a linear correlation wit the H$_2$ column density reported for diffuse and translucent clouds. More importantly, the CH line profile is found to be composed of the narrow and broad components. Although the broad component is dominant around the CI peak, the narrow component appears in the TMC-1 ridge and dense core regions such as L1527 and TMC-1A. This trend seems to reflect a narrowing of the line width during the formation of dense cores. These results suggest that the 3.3 GHz CH line is a useful tool for tracing the chemical and physical evolution of molecular clouds.Comment: 8 page