Investigating the response of leaf area index to droughts in southern African vegetation using observations and model-simulations

In many regions of the world, frequent and continual dry spells are exacerbating drought conditions, which have severe impacts on vegetation biomes. Vegetation in southern Africa is among the most affected by drought. Here, we assessed the spatiotemporal characteristics of meteorological drought in southern Africa using the standardized precipitation evapotranspiration index (SPEI) over a 30-year period (1982–2011). The severity and the effects of droughts on vegetation productiveness were examined at different drought timescales (1- to 24-month timescales). In this study, we characterized vegetation using the leaf area index (LAI) after evaluating its relationship with the normalized difference vegetation index (NDVI). Correlating the LAI with the SPEI, we found that the LAI responds strongly (r=0.6) to drought over the central and southeastern parts of the region, with weaker impacts (r<0.4) over parts of Madagascar, Angola, and the western parts of South Africa. Furthermore, the latitudinal distribution of LAI responses to drought indicates a similar temporal pattern but different magnitudes across timescales. The results of the study also showed that the seasonal response across different southern African biomes varies in magnitude and occurs mostly at shorter to intermediate timescales. The semi-desert biome strongly correlates (r=0.95) to drought as characterized by the SPEI at a 6-month timescale in the MAM (March–May; summer) season, while the tropical forest biome shows the weakest response (r=0.35) at a 6-month timescale in the DJF (December–February; hot and rainy) season. In addition, we found that the spatial pattern of change of LAI and SPEI are mostly similar during extremely dry and wet years, with the highest anomaly observed in the dry year of 1991, and we found different temporal variability in global and regional responses across different biomes. We also examined how well an ensemble of state-of-the-art dynamic global vegetation models (DGVMs) simulate the LAI and its response to drought. The spatial and seasonal response of the LAI to drought is mostly overestimated in the DGVM multimodel ensemble compared to the response calculated for the observation-based data. The correlation coefficient values for the multimodel ensemble are as high as 0.76 (annual) over South Africa and 0.98 in the MAM season over the temperate grassland biome. Furthermore, the DGVM model ensemble shows positive biases (3 months or longer) in the simulation of spatial distribution of drought timescales and overestimates the seasonal distribution timescales. The results of this study highlight the areas to target for further development of DGVMs and can be used to improve the models' capability in simulating the drought–vegetation relationship

The carbon cycle in Mexico: past, present and future of C stocks and fluxes

PublishedThe Supplement related to this article is available online at doi:10.5194/bg-13-223-2016-supplement.We modeled the carbon (C) cycle in Mexico with a process-based approach. We used different available products (satellite data, field measurements, models and flux towers) to estimate C stocks and fluxes in the country at three different time frames: present (defined as the period 2000–2005), the past century (1901–2000) and the remainder of this century (2010–2100). Our estimate of the gross primary productivity (GPP) for the country was 2137 ± 1023 TgC yr−1 and a total C stock of 34 506 ± 7483 TgC, with 20 347 ± 4622 TgC in vegetation and 14 159 ± 3861 in the soil. Contrary to other current estimates for recent decades, our results showed that Mexico was a C sink over the period 1990–2009 (+31 TgC yr−1) and that C accumulation over the last century amounted to 1210 ± 1040 TgC. We attributed this sink to the CO2 fertilization effect on GPP, which led to an increase of 3408 ± 1060 TgC, while both climate and land use reduced the country C stocks by −458 ± 1001 and −1740 ± 878 TgC, respectively. Under different future scenarios, the C sink will likely continue over the 21st century, with decreasing C uptake as the climate forcing becomes more extreme. Our work provides valuable insights on relevant driving processes of the C cycle such as the role of drought in drylands (e.g., grasslands and shrublands) and the impact of climate change on the mean residence time of soil C in tropical ecosystems.The lead author (G. Murray-Tortarolo) thanks CONACYT-CECTI, the University of Exeter and Secretaría de Educación Pública (SEP) for their funding of this project. The authors extend their thanks to Carlos Ortiz Solorio and to the Colegio de Posgraduados for the field soil data and to the Alianza Redd+ Mexico for the field biomass data. This project would not have been possible without the valuable data from the CMIP5 models. A. Arneth, G. Murray-Tortarolo, A. Wiltshire and S. Sitch acknowledge the support of the European Commission-funded project LULCC4C (grant no. 603542). A. Wiltshire was partsupported by the Joint UK DECC/Defra Met Office Hadley Centre Climate Programme (GA01101)

Interobserver variability studies in diagnostic imaging: a methodological systematic review

OBJECTIVES: To review the methodology of interobserver variability studies; including current practice and quality of conducting and reporting studies. METHODS: Interobserver variability studies between January 2019 and January 2020 were included; extracted data comprised of study characteristics, populations, variability measures, key results, and conclusions. Risk of bias was assessed using the COSMIN tool for assessing reliability and measurement error. RESULTS: Seventy-nine full-text studies were included covering various imaging tests and clinical areas. The median number of patients was 47 (IQR:23-88), and observers were 4 (IQR:2-7), with sample size justified in 12 (15%) studies. Most studies used static images (n = 75, 95%), where all observers interpreted images for all patients (n = 67, 85%). Intraclass correlation coefficients (ICC) (n = 41, 52%), Kappa (κ) statistics (n = 31, 39%) and percentage agreement (n = 15, 19%) were most commonly used. Interpretation of variability estimates often did not correspond with study conclusions. The COSMIN risk of bias tool gave a very good/adequate rating for 52 studies (66%) including any studies that used variability measures listed in the tool. For studies using static images, some study design standards were not applicable and did not contribute to the overall rating. CONCLUSIONS: Interobserver variability studies have diverse study designs and methods, the impact of which requires further evaluation. Sample size for patients and observers was often small without justification. Most studies report ICC and κ values, which did not always coincide with the study conclusion. High ratings were assigned to many studies using the COSMIN risk of bias tool, with certain standards scored 'not applicable' when static images were used. ADVANCES IN KNOWLEDGE: The sample size for both patients and observers was often small without justification. For most studies, observers interpreted static images and did not evaluate the process of acquiring the imaging test, meaning it was not possible to assess many COSMIN risk of bias standards for studies with this design. Most studies reported intraclass correlation coefficient and κ statistics; study conclusions often did not correspond with results

Interobserver variability studies in diagnostic imaging:a methodological systematic review

Objectives: To review the methodology of interobserver variability studies; including current practice and quality of conducting and reporting studies. Methods: Interobserver variability studies between January 2019 and January 2020 were included; extracted data comprised of study characteristics, populations, variability measures, key results, and conclusions. Risk of bias was assessed using the COSMIN tool for assessing reliability and measurement error. Results: Seventy-nine full-text studies were included covering various imaging tests and clinical areas. The median number of patients was 47 (IQR:23–88), and observers were 4 (IQR:2–7), with sample size justified in 12 (15%) studies. Most studies used static images (n = 75, 95%), where all observers interpreted images for all patients (n = 67, 85%). Intraclass correlation coefficients (ICC) (n = 41, 52%), Kappa (κ) statistics (n = 31, 39%) and percentage agreement (n = 15, 19%) were most commonly used. Interpretation of variability estimates often did not correspond with study conclusions. The COSMIN risk of bias tool gave a very good/adequate rating for 52 studies (66%) including any studies that used variability measures listed in the tool. For studies using static images, some study design standards were not applicable and did not contribute to the overall rating. Conclusions: Interobserver variability studies have diverse study designs and methods, the impact of which requires further evaluation. Sample size for patients and observers was often small without justification. Most studies report ICC and κ values, which did not always coincide with the study conclusion. High ratings were assigned to many studies using the COSMIN risk of bias tool, with certain standards scored ‘not applicable’ when static images were used. Advances in knowledge: The sample size for both patients and observers was often small without justification. For most studies, observers interpreted static images and did not evaluate the process of acquiring the imaging test, meaning it was not possible to assess many COSMIN risk of bias standards for studies with this design. Most studies reported intraclass correlation coefficient and κ statistics; study conclusions often did not correspond with results

Assessing a New Clue to How Much Carbon Plants Take Up

Current climate models disagree on how much carbon dioxide land ecosystems take up for photosynthesis. Tracking the stronger carbonyl sulfide signal could help

The terrestrial carbon budget of South and Southeast Asia

This is the final version of the article. Available from IOP Publishing via the DOI in this record.Accomplishing the objective of the current climate policies will require establishing carbon budget and flux estimates in each region and county of the globe by comparing and reconciling multiple estimates including the observations and the results of top-down atmospheric carbon dioxide (CO2) inversions and bottom-up dynamic global vegetation models. With this in view, this study synthesizes the carbon source/sink due to net ecosystem productivity (NEP), land cover land use change (E LUC), fires and fossil burning (E FIRE) for the South Asia (SA), Southeast Asia (SEA) and South and Southeast Asia (SSEA = SA + SEA) and each country in these regions using the multiple top-down and bottom-up modeling results. The terrestrial net biome productivity (NBP = NEP - E LUC - E FIRE) calculated based on bottom-up models in combination with E FIRE based on GFED4s data show net carbon sinks of 217 ±147, 10 ±55, and 227 ±279 TgC yr-1 for SA, SEA, and SSEA. The top-down models estimated NBP net carbon sinks were 20 ±170, 4 ±90 and 24 ±180 TgC yr-1. In comparison, regional emissions from the combustion of fossil fuels were 495, 275, and 770 TgC yr-1, which are many times higher than the NBP sink estimates, suggesting that the contribution of the fossil fuel emissions to the carbon budget of SSEA results in a significant net carbon source during the 2000s. When considering both NBP and fossil fuel emissions for the individual countries within the regions, Bhutan and Laos were net carbon sinks and rest of the countries were net carbon source during the 2000s. The relative contributions of each of the fluxes (NBP, NEP, E LUC, and E FIRE, fossil fuel emissions) to a nation's net carbon flux varied greatly from country to country, suggesting a heterogeneous dominant carbon fluxes on the country-level throughout SSEA.This research was partly supported by the NASA Land Cover and Land Use Change Program (NNX14AD94G) and the US National Science Foundation (No. NSF-AGS-12-43071)

Evaluation of land surface models in reproducing satellite-derived LAI over the high-latitude northern hemisphere. Part I: Uncoupled DGVMs

PublishedJournal ArticleLeaf Area Index (LAI) represents the total surface area of leaves above a unit area of ground and is a key variable in any vegetation model, as well as in climate models. New high resolution LAI satellite data is now available covering a period of several decades. This provides a unique opportunity to validate LAI estimates from multiple vegetation models. The objective of this paper is to compare new, satellite-derived LAI measurements with modeled output for the Northern Hemisphere. We compare monthly LAI output from eight land surface models from the TRENDY compendium with satellite data from an Artificial Neural Network (ANN) from the latest version (third generation) of GIMMS AVHRR NDVI data over the period 1986-2005. Our results show that all the models overestimate the mean LAI, particularly over the boreal forest. We also find that seven out of the eight models overestimate the length of the active vegetation-growing season, mostly due to a late dormancy as a result of a late summer phenology. Finally, we find that the models report a much larger positive trend in LAI over this period than the satellite observations suggest, which translates into a higher trend in the growing season length. These results highlight the need to incorporate a larger number of more accurate plant functional types in all models and, in particular, to improve the phenology of deciduous trees. © 2013 by the authors.The corresponding author also thanks the CONACYT-CECTI and the University of Exeter for their funding during the PhD studies. The National Center for Atmospheric Research is sponsored by the National Science Foundation

Role of CO2, climate and land use in regulating the seasonal amplitude increase of carbon fluxes in terrestrial ecosystems: A multimodel analysis

© Author(s) 2016.We examined the net terrestrial carbon flux to the atmosphere (FTA) simulated by nine models from the TRENDY dynamic global vegetation model project for its seasonal cycle and amplitude trend during 1961-2012. While some models exhibit similar phase and amplitude compared to atmospheric inversions, with spring drawdown and autumn rebound, others tend to rebound early in summer. The model ensemble mean underestimates the magnitude of the seasonal cycle by 40g% compared to atmospheric inversions. Global FTA amplitude increase (19g±g8g%) and its decadal variability from the model ensemble are generally consistent with constraints from surface atmosphere observations. However, models disagree on attribution of this long-term amplitude increase, with factorial experiments attributing 83g±g56g%, ĝ'3g±g74 and 20g±g30g% to rising CO2, climate change and land use/cover change, respectively. Seven out of the nine models suggest that CO2 fertilization is the strongest control - with the notable exception of VEGAS, which attributes approximately equally to the three factors. Generally, all models display an enhanced seasonality over the boreal region in response to high-latitude warming, but a negative climate contribution from part of the Northern Hemisphere temperate region, and the net result is a divergence over climate change effect. Six of the nine models show that land use/cover change amplifies the seasonal cycle of global FTA: some are due to forest regrowth, while others are caused by crop expansion or agricultural intensification, as revealed by their divergent spatial patterns. We also discovered a moderate cross-model correlation between FTA amplitude increase and increase in land carbon sink (R2 Combining double low line g0.61). Our results suggest that models can show similar results in some benchmarks with different underlying mechanisms; therefore, the spatial traits of CO2 fertilization, climate change and land use/cover changes are crucial in determining the right mechanisms in seasonal carbon cycle change as well as mean sink change.This study was funded by NOAA, NASA and NSF. This study was partly supported by a Laboratory Directed Research and Development project by Pacific Northwest National Laboratory that is being managed by Battelle Memorial Institute for the US Department of Energy. We thank the TRENDY coordinators and participating modeling teams, NOAA ESRL and Jena/CarbonTracker inversion teams

Vegetation distribution and terrestrial carbon cycle in a carbon cycle configuration of JULES4.6 with new plant functional types

This is the final version. Available on open access from EGU via the DOI in this recordDynamic global vegetation models (DGVMs) are used for studying historical and future changes to vegetation and the terrestrial carbon cycle. JULES (the Joint UK Land Environment Simulator) represents the land surface in the Hadley Centre climate models and in the UK Earth System Model. Recently the number of plant functional types (PFTs) in JULES was expanded from five to nine to better represent functional diversity in global ecosystems. Here we introduce a more mechanistic representation of vegetation dynamics in TRIFFID, the dynamic vegetation component of JULES, which allows for any number of PFTs to compete based solely on their height; therefore, the previous hardwired dominance hierarchy is removed. With the new set of nine PFTs, JULES is able to more accurately reproduce global vegetation distribution compared to the former five PFT version. Improvements include the coverage of trees within tropical and boreal forests and a reduction in shrubs, the latter of which dominated at high latitudes. We show that JULES is able to realistically represent several aspects of the global carbon (C) cycle. The simulated gross primary productivity (GPP) is within the range of observations, but simulated net primary productivity (NPP) is slightly too high. GPP in JULES from 1982 to 2011 is 133PgCyrg'1, compared to observation-based estimates (over the same time period) between 1238 and 150-175PgCyrg'1. NPP from 2000 to 2013 is 72PgCyrg'1, compared to satellite-derived NPP of 55PgCyrg'1 over the same period and independent estimates of 56.214.3PgCyrg'1. The simulated carbon stored in vegetation is 542PgC, compared to an observation-based range of 400-600PgC. Soil carbon is much lower (1422PgC) than estimates from measurements ( &gt; 2400PgC), with large underestimations of soil carbon in the tropical and boreal forests. We also examined some aspects of the historical terrestrial carbon sink as simulated by JULES. Between the 1900s and 2000s, increased atmospheric carbon dioxide levels enhanced vegetation productivity and litter inputs into the soils, while land use change removed vegetation and reduced soil carbon. The result is a simulated increase in soil carbon of 57PgC but a decrease in vegetation carbon of 98PgC. The total simulated loss of soil and vegetation carbon due to land use change is 138PgC from 1900 to 2009, compared to a recent observationally constrained estimate of 15550PgC from 1901 to 2012. The simulated land carbon sink is 2.01.0PgCyrg'1 from 2000 to 2009, in close agreement with estimates from the IPCC and Global Carbon Project.The authors acknowledge support from the Natural Environment Research Council (NERC) Joint Weather and Climate Research Programme through grant numbers NE/K016016/1 (Anna B. Harper) and NEC05816 (Lina M. Mercado). NERC support was also provided to Lina M. Mercado through the UK Earth System Modelling project (UKESM, grant NE/N017951/1). Anna B. Harper also acknowledges support from her EPSRC Fellowship (EP/N030141/1) and the EU H2020 project CRESCENDO (GA641816). The EU project FP7 LUC4C (GA603542) provided support for Stephen Sitch and Pierre Friedlingstein. The Met Office authors were supported by the Joint UK BEIS/Defra Met Office Hadley Centre Climate Programme (GA01101)

Elevated CO₂ does not increase eucalypt forest productivity on a low-phosphorus soil

Rising atmospheric CO2 stimulates photosynthesis and productivity of forests, offsetting CO2 emissions. Elevated CO2 experiments in temperate planted forests yielded ~23% increases in productivity over the initial years. Whether similar CO2 stimulation occurs in mature evergreen broadleaved forests on low-phosphorus (P) soils is unknown, largely due to lack of experimental evidence. This knowledge gap creates major uncertainties in future climate projections as a large part of the tropics is P-limited. Here,we increased atmospheric CO2 concentration in a mature broadleaved evergreen eucalypt forest for three years, in the first large-scale experiment on a P-limited site. We show that tree growth and other aboveground productivity components did not significantly increase in response to elevated CO2 in three years, despite a sustained 19% increase in leaf photosynthesis. Moreover, tree growth in ambient CO2 was strongly P-limited and increased by ~35% with added phosphorus. The findings suggest that P availability may potentially constrain CO2-enhanced productivity in P-limited forests; hence, future atmospheric CO2 trajectories may be higher than predicted by some models. As a result, coupled climate-carbon models should incorporate both nitrogen and phosphorus limitations to vegetation productivity in estimating future carbon sinks