39 research outputs found
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
- Author
- Antunes Luciana Principal
- Barbosa Deibs
- Condomitti Epamino George Willian
- da Cruz Joao Batista
- da Silva Aline Maria
- Digiampietri Luciano Antonio
- Lemos Leandro Nascimento
- Lombardi Karen Cristina
- Machado Silva Gianluca Major
- Martins Layla Farage
- Oliveira Julio Cezar Franco de
- Pascon Renata Castiglioni
- Pereira Roberta Verciano
- Quaggio Ronaldo Bento
- Ramos Patricia Locosque
- Setubal Joao Carlos
- Silva Moura Livia Maria
- Thomas Andrew Maltez
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/2016
- Field of study
Composting is a promising source of new organisms and thermostable enzymes that may be helpful in environmental management and industrial processes. Here we present results of metagenomicand metatranscriptomic-based analyses of a large composting operation in the Sao Paulo Zoo Park. This composting exhibits a sustained thermophilic profile (50 degrees C to 75 degrees C), which seems to preclude fungal activity. The main novelty of our study is the combination of time-series sampling with shotgun DNA, 16S rRNA gene amplicon, and metatranscriptome high-throughput sequencing, enabling an unprecedented detailed view of microbial community structure, dynamics, and function in this ecosystem. The time-series data showed that the turning procedure has a strong impact on the compost microbiota, restoring to a certain extent the population profile seen at the beginning of the processand that lignocellulosic biomass deconstruction occurs synergistically and sequentially, with hemicellulose being degraded preferentially to cellulose and lignin. Moreover, our sequencing data allowed near-complete genome reconstruction of five bacterial species previously found in biomass-degrading environments and of a novel biodegrading bacterial species, likely a new genus in the order Bacillales. The data and analyses provided are a rich source for additional investigations of thermophilic composting microbiology.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Provost's Office for Research of the University of Sao PauloCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Univ Sao Paulo, Inst Quim, Dept Bioquim, Sao Paulo, BrazilUniv Sao Paulo, Programa Pos Graduacao Interunidades Bioinformat, Sao Paulo, BrazilUniv Sao Paulo, Escola Artes Ciencias & Humanidades, Sao Paulo, Brazil|Fundacao Parque Zool Sao Paulo, Sao Paulo, BrazilUniv Fed Sao Paulo, Dept Ciencias Biol, Sao Paulo, BrazilBiocomplex Inst Virginia, Blacksburg, VA USADepartamento de Ciências Biológicas, Universidade Federal de São Paulo, São Paulo, BrazilFAPESP: 2011/50870-6Web of Scienc
Caravela: a new metagenomic browser
- Publication venue
- 'Universidade de Sao Paulo, Agencia USP de Gestao da Informacao Academica (AGUIA)'
- Publication date
- 12/06/2017
- Field of study
Metagenômica é a técnica que permite analisar os genomas de microorganismos que habitam determinados nichos do ambiente sem a necessidade de isolar e cultivar cada um separadamente. Ao conjunto de microorganismos que habita um determinado nicho se dá o nome de microbi- oma. Análises do perfil da diversidade taxonômica e funcional de comunidades microbianas em microbiomas são comuns em estudos de metagenômica. No entanto, atualmente as plata- formas de uso geral (como MG-RAST e IMG/M) tendem a separar as análises baseadas em reads (sequências não montadas) das baseadas em contigs (sequências montadas), isto dificulta as análises destes dados. Motivado por esta separação, desenvolvemos uma plataforma web, batizada de CARAVELA, que facilita a conexão entre os resultados de análises de diversidade taxonômica e funcional baseadas em reads e contigs respectivamente. Uma das principais fun- ções da plataforma CARAVELA é associar a identificação taxonômica de cada read com o contig que este read faz parte e, anotações funcionais do contig, quando existirem. Essa função deve permitir a rápida identificação de contigs potencialmente quiméricos bem como contigs taxonomicamente bem resolvidos. Também é possvel fazer buscas, tais como: listar todos os contigs que tenham um ou mais reads classificados como Pseudoxanthomonas suwonensis em sua composição e ainda, é possvel navegar nos contigs de maneira similar a navegadores de metagenomas tradicionais. Podem ser utilizados como arquivos de entrada a sada de outros programas, desde que o formato atenda certos padrões. A plataforma CARAVELA foi desenvol- vida com Java, HTML, CSS, Javascript e Mysql, e com o fim de testar a ferramenta, utilizamos o conjunto de dados metagnômicos obtidos a partir da operação de compostagem do Parque Zoológico de São Paulo.The taxonomic diversity analysis (read-based) and functional analysis (contig / gene-based) from metagenomic studies usually generate information that is complementary. However, the tools that produce gene annotations (eg IMG / M) and taxonomic assignments (eg MyTaxa) do not allow easy integration of these results. Motivated by this split, we are develop a web platform called Caravela to facilitate the integration, search and visualization of information provided by read-based analyzes and contig / gene-based analyzes. The tool is able to display the list of contigs and for each contig, it displays annotated genes, reads participating in its composition and rate associated with each read (when such association exists). Such a capability enable manual / automated curation of assembly as well as taxonomic assignments (detection of possible mis-assignments). The platform able to accept output files from a variety of tools, as long as the file formats follow certain standards. The tests was performed on a dataset of metagenomic reads obtained from the composting operation of the São Paulo Zoological Park. The tool was implemented using Java technology, HTML, CSS and Javascript. Information was stored in a MySQL database
Deep Underground Neutrino Experiment (DUNE) Near Detector Conceptual Design Report
- Author
- Abed Abud Adam
- Abi Babak
- Acciarri Roberto
- Acero Mario
- Adamov Giorge
- Adams David
- Adinolfi Marco
- Aduszkiewicz Antoni
- Ahmad Zubayer
- Ahmed Jhanzeb
- Alion Tyler
- Alonso Monsalve Saul
- Alrashed Munerah
- Alt Christoph
- Alton Andrew
- Amedo Pablo
- Anderson John
- Andreopoulos Costas
- Andrews Michael P
- Andrianala Fenompanirina
- Andringa Sofia
- Anfimov Nikolay
- Ankowski Artur
- Antonova Maria
- Antusch Stefan
- Aranda-Fernandez Alfredo
- Ariga Akitaka
- Arnold Lukas
- Arroyave Manuel
- Asaadi Jonathan
- Aurisano Adam
- Aushev Vladimir
- Autiero Dario
- Ayala-Torres Marco Alberto
- Azfar Farrukh
- Back A.
- Back Henning
- Back John
- Backhouse Chris
- Baesso Paolo
- Bagaturia Iuri
- Bagby Linda
- Balasubramanian Supraja
- Baldi Pierre
- Baller Bruce
- Bambah Bindu
- Barao Fernando
- Barenboim Gabriela
- Barker Gary J
- Barkhouse Wayne
- Barnes Christopher
- Barr Giles
- Barranco Monarca Juan
- Barros Nuno
- Barrow Joshua
- Basharina-Freshville Anastasia
- Bashyal Amit
- Basque Vincent
- Batista das Chagas Ewerton
- Battat J.B. R.
- Battisti Federico
- Bay Fatih
- Bazo Alba José Luis
- Beacom John
- Bechetoille Edouard
- Behera Biswaranjan
- Belchior E.
- Bellantoni Leo
- Bellettini Giorgio
- Bellini Vincenzo
- Beltramello Olga
- Belver Daniel
- Benekos Nektarios
- Bento Neves Francisco
- Berkman Sophie
- Bernardini Paolo
- Berner Roman
- Berns Hans-Gerd
- Bertolucci Sergio
- Betancourt Minerba
- Betancur Rodríguez Amalia
- Bhattacharjee Maharnab
- Bhuller Shyam
- Bhuyan Bipul
- Biagi Simone
- Bian Jianming
- Biassoni Matteo
- Biery Kurt
- Bilki Burak
- Bishai Mary
- Bitadze Alexander
- Blake Andrew
- Blaszczyk Flor de Maria
- Blazey Gerald C
- Blucher Edward
- Boissevain Jan
- Bolognesi Sara
- Bolton Timothy
- Bomben Luca
- Bonesini Maurizio
- Bongrand Mathieu
- Bonini Filiberto
- Booth Alexander
- Booth Chris
- Bordoni Stefania
- Borkum Aran
- Boschi Tommaso
- Bostan Nilay
- Bour Petr
- Bourgeois Christian
- Boyd Steve B
- Boyden Daniel
- Bracinik Juraj
- Braga Davide
- Brailsford Dominic
- Brandt Andrew
- Bremer Johan
- Brew Christopher
- Brianne Eldwan
- Brice Stephen
- Brizzolari Claudia
- Bromberg Carl
- Brooijmans Gustaaf
- Brooke Jim
- Bross Alan
- Brunetti Giulia
- Brunetti Maria
- Buchanan Norman
- Budd Howard
- Cagnoli I.
- Caiulo Davide
- Calafiura Paolo
- Calcutt Jacob
- Calin Marius
- Calvez Steven
- Calvo Enrique
- Caminata Alessio
- Campanelli Mario
- Cankocak Kerem
- Caratelli David
- Carini Gabriella
- Carlus Bruno
- Carniti Paolo
- Caro Terrazas Ivan
- Carranza Hector
- Carroll Thomas
- Castaño Forero Javier
- Castillo Andrés
- Castromonte Cesar
- Catano-Mur Erika
- Cattadori Carla
- Cavalier Fabien
- Cavanna Flavio
- Centro Sandro
- Cerati Giuseppe
- Cervelli Alberto
- Cervera Villanueva Anselmo
- Chalifour Michel
- Chappell Andrew
- Chardonnet Etienne
- Charitonidis Nikolas
- Chatterjee Animesh
- Chattopadhyay Subhasish
- Chen Hucheng
- Chen Mu-Chun
- Chen Yifan
- Chen Zheyang
- Cherdack Daniel
- Chi Cheng-Yi
- Childress Sam
- Chiriacescu Ana
- Chisnall Georgia
- Cho Kihyeon
- Choate Sarah
- Chokheli David
- Choubey Sandhya
- Christensen Anne
- Christian David
- Christodoulou Georgios
- Chukanov Artem
- Church Eric
- Cicero V.
- Clarke Peter
- Coan Thomas
- Cocco Alfredo
- Coelho J.A. B.
- Conley Erin
- Conley Robert
- Conrad Janet M
- Convery Mark
- Copello Simone
- Corwin Luke
- Cremaldi Lucien
- Cremonesi Linda
- Crespo-Anadón José
- Cristaldo Esteban
- Cross Ryan
- Cudd Andrew
- Cuesta Clara
- Cui Yanou
- Cussans David
- da Motta Helio
- da Silva Peres Leonardo
- Dabrowski Mieczyslaw
- Dalager Olivia
- David Claire
- David Quentin
- Davies Gavin
- Davini Stefano
- Dawson Jaime
- de Almeida Rogerio
- De Bonis Isabelle
- de Gouvea Andre
- de Holanda Pedro
- de Icaza Astiz Iker
- De Jong Paul
- De Lurgio Patrick
- de Mello Neto J.R. T.
- de Oliveira M.A. Leigui
- De Roeck Albert
- De Romeri Valentina
- de Souza Greg
- De Kaushik
- Debbins Paul
- Decowski M Patrick
- Deisting Alexander
- Delbart Alain
- Delepine David
- Delgado Maritza
- Dell'Acqua Andrea
- DeMuth David
- Dennis Steve
- Densham Chris
- Deptuch Grzegorz
- Dharmapalan Ranjan
- Di Domizio Sergio
- Di Giulio Letizia
- Di Noto Lea
- Diaz Felix
- Diaz Jorge S
- Ding Pengfei
- Distefano Carla
- Diurba Richard
- Diwan Milind
- Djurcic Zelimir
- Dokania Neha
- Dolan Stephen
- Dolinski Michelle J
- Domine Laura
- Douglas Daniel
- Douillet Denis
- Drake Gary
- Drielsma Francois
- Duchesneau Dominique
- Duffy Kirsty
- Dunne Patrick
- Durkin Tim
- Duyang Hongyue
- Dvornikov Olexiy
- Dwyer Daniel A
- Dyshkant Alexandre S
- Eads Michael
- Earle Antony
- Edmunds Daniel
- Eisch Jonathan
- Emberger Lorenz
- Emery Sandrine
- Ereditato Antonio
- Escobar Carlos O
- Eurin Guillaume
- Evans Justin
- Ewart Erin
- Ezeribe Anthony
- Fahey Kevin
- Fajardo L.S. Gomez
- Falcone Andrea
- Farnese Christian
- Farzan Yasaman
- Felix Julian
- Fernandes Carneiro da Silva Mateus
- Fernandez Menendez Pablo
- Fernandez-Martinez Enrique
- Ferraro Federico
- Fields Laura
- Filthaut Frank
- Fiorentini Arturo
- Fitzpatrick Rory
- Flanagan Will
- Fleming Bonnie
- Flight Robert
- Forero David
- Fowler Jack
- Fox Walt
- Franc Jiri
- Francis Kurt
- Franco Domenico
- Freeman John
- Freestone Julian
- Fried Jack
- Friedland Alex
- Fuess Stu
- Furic Ivan
- Furmanski Andrew
- Gabrielli A.
- Gago AM
- Gallagher Hugh
- Gallas Alexandre
- Gallego-Ros Ana
- Gallice Niccolo
- Galymov Vyacheslav
- Gamberini Enrico
- Gamble Trevor
- Gandhi Raj
- Gandrajula Reddy
- Gao Fan
- Gao Shanshan
- Garcia-Gamez Diego
- García-Peris Miguel
- Gardiner Steven
- Gastler Dan
- Ge Guanqun
- Gelli Bruno
- Gendotti Adamo
- Gent Stephen
- Ghorbani-Moghaddam Zahra
- Gibin Daniele
- Gil-Botella Ines
- Gilligan Sean
- Girerd Claude
- Giri Anjan Kumar
- Gnani Dario
- Gogota Olga
- Gold Michael
- Gollapinni Sowjanya
- Gollwitzer Keith
- Gomes Ricardo
- Gomez Bermeo Laura Vanessa
- Gonnella Francesco
- Gonzalez-Cuevas Juan Alberto
- Gonzalez-Diaz Deigo
- Gonzalez-Lopez Manuel
- Goodman Maury
- Goodwin Owen
- Goswami Srubabati
- Gotti Claudio
- Goudzovski Evgueni
- Grace Carl
- Graham Mathew
- Gran Rik
- Granados Everardo
- Granger Pierre
- Grant Alan
- Grant Christopher
- Gratieri Diego
- Green Patrick
- Greenler Leland
- Greer Joel
- Griffith Clark
- Groh Micah
- Grudzinski James
- Grzelak Katarzyna
- Gu Wenqiang
- Guarino Victor
- Guenette Roxanne
- Guerard Eric
- Guerzoni M.
- Guglielmi Alberto
- Guo Bing
- Guthikonda K.K.
- Gutierrez Rafael
- Guzowski Pawel
- Guzzo Marcelo
- Gwon Sunwoo
- Habig Alec
- Hadavand Haleh
- Haenni Roger
- Hahn Alan
- Haiston James
- Hamacher-Baumann Philip
- Hamernik Thomas
- Hamilton Philip
- Han Jiyeon
- Harris Deborah
- Hartnell Jeffrey
- Harton John
- Hasegawa Takyua
- Hasnip Ciaran
- Hatcher Robert
- Hatfield Kaleb
- Hatzikoutelis Athanasios
- Hayes Christopher
- Hazen Eric
- Heavey Anne
- Heeger Karsten
- Heise Jaret
- Hennessy Karol
- Henry Sarah
- Hernandez Morquecho Miguel Angel
- Herner Kenneth
- Hertel Lars
- Hewes Jeremy
- Hewes V.
- Hewes V.
- Higuera Pichardo Aaron
- Hill Tony
- Hillier Stephen
- Himmel Alexander
- Hoff James
- Hohl Christian
- Holin Anna
- Hoppe Eric
- Horton-Smith Glenn
- Hostert Matheus
- Hourlier Adrien
- Howard Bruce
- Howell Ryan
- Huang Junting
- Huang Junying
- Hugon Justin
- Iles Gregory
- Ilic Nikolina
- Iliescu Antoniu
- Illingworth Robert
- Ingratta G.
- Ioannisian Ara
- Isenhower Larry
- Itay Ran
- Izmaylov Alexander
- Jackson Saskia
- Jain Vivek
- James Eric
- Jargowsky Benjamin
- Jediny Filip
- Jena Deepika
- Jeong Yu Seon
- Jesús-Valls César
- Ji Xiangpan
- Jiang Libo
- Jiménez Sergio
- Jipa Alexandru
- Johnson Randy
- Johnston N.
- Jones Benjamin
- Jones Sebastian
- Judah Matthew
- Jung Chang Kee
- Junk Thomas
- Jwa Yeon-jae
- Kabirnezhad Monireh
- Kaboth Asher
- Kadenko I.
- Kakorin Igor
- Kamiya Felipe
- Kaneshige Nathaniel
- Karagiorgi Georgia
- Karaman Gurkan
- Karcher Armin
- Karolak Mark
- Karyotakis Yannis
- Kasai Seiji
- Kasetti Siva
- Kashur Lane
- Kazaryan Narine
- Kearns Edward
- Keener Paul
- Kelly Kevin
- Kemp Ernesto
- Kemularia O.
- Ketchum Wes
- Kettell Steve
- Khabibullin Marat
- Khotjantsev Alexei
- Khvedelidze Arsen
- Kim Doojin
- King Bonnie
- Kirby Brian
- Kirby Mike
- Klein Joshua
- Koehler Kevin
- Koerner Lisa
- Kohn Sam
- Koller Patrick
- Kolupaeva Liudmila
- Kordosky Mike
- Kosc Thomas
- Kose Umut
- Kostelecky V Alan
- Kothekar Kunal
- Krennrich Frank
- Kreslo Igor
- Kudenko Yury
- Kudryavtsev Vitaly A
- Kulagin Sergey
- Kumar Jason
- Kumar Praveen
- Kumar R.
- Kunze Pablo
- Kurita Nadine
- Kuruppu Chatura
- Kus Vaclav
- Kutter Thomas
- Lambert Andrew
- Land Benjamin
- Lande Kenneth
- Lane Charles
- Lang Karol
- Langford Thomas
- Larkin Jacob
- Lasorak Pierre
- Last David
- Lastoria Chiara
- Laundrie Andy
- Laurenti G.
- Lawrence Andrew
- Lazanu Ionel
- LaZur Ryan
- Le Trung
- Leardini Sara
- Learned John
- LeBrun Patrice
- LeCompte Thomas
- Lehmann Miotto Giovanna
- Lehnert Ralf
- Leitner Matthaeus
- Li Lingge
- Li Shirley W
- Li Teng
- Li Yichen
- Liao Heng-Ye
- Lin Cheng-Ju Stephen
- Lin Qing
- Lin Shih-Kai
- Lister Adam
- Littlejohn Bryce
- Liu Junze
- Lockwitz Sarah
- Loew Timothy
- Lokajicek Milos
- Lomidze Irakli
- Long Ken
- Loo Kai
- Lorca David
- Lord Tom
- LoSecco John M
- Louis William
- Lu Xianguo
- Luk Kam-Biu
- Luo Xiao
- Lurkin Nicolas
- Lux Thorsten
- Luzio Vitor
- MacFarlane David
- Machado Ana Amelia
- Machado Pedro
- Macias Christopher Thomas
- Macier Jolie R
- Maddalena Antonello
- Madera Alfonso
- Madigan Peter
- Magill Steve
- Mahn Kendall
- Maio Amélia
- Major Adryanna
- Maloney James
- Mandrioli Gianni
- Mandujano Roberto
- Maneira José
- Manenti Laura
- Manly Steve
- Mann Anthony
- Manolopoulos Konstantinos
- Manrique Plata Maria
- Manyam Venkata
- Manzanillas Luis
- Marchan Miquel
- Marchionni Alberto
- Marciano William
- Marfatia Danny
- Mariani Camillo
- Maricic Jelena
- Marie Rodolphe
- Marinho Franciole
- Marino Alysia
- Marsden David
- Marshak Marvin
- Marshall Chris
- Marshall John
- Marteau Jacques
- Martin-Albo Justo
- Martinez Caicedo David
- Martinez Norman
- Martynenko Sergey
- Mason Katie
- Mastbaum Andrew
- Masud Mehedi
- Matsuno Shigenobu
- Matthews James
- Mauger Christopher
- Mauri Nicoletta
- Mavrokoridis Konstantinos
- Mawby Isobel
- Mazza Roberto
- Mazzacane Anna
- Mazzucato Edoardo
- McAskill Tracy
- McCluskey Elaine
- McConkey Nicola
- McFarland Kevin
- McGrew Clark
- McNab Andrew
- Mefodiev Alexander
- Mehta Poonam
- Melas Pantelis
- Mena Olga
- Menary Scott
- Mendez Hector
- Menegolli A.
- Meng Guang
- Messier Mark
- Metcalf William
- Mettler Thomas
- Mewes Matthew
- Meyer Holger
- Miao Ting
- Michna Gregory
- Miedema Thijs
- Migenda Jost
- Mikola Veera
- Milincic Radovan
- Miller William
- Mills Joshua
- Milne Cody
- Mineev Oleg
- Miranda Omar
- Miryala Sandeep
- Mishra C Shekhar
- Mishra Sanjib R
- Mislivec Aaron
- Mladenov Dimitar
- Mocioiu Irina
- Moffat Kristian
- Moggi Niccolo
- Mohanta Rukmani
- Mohayai Tanaz
- Mokhov Nikolai
- Molina Bueno Laura
- Molina Jorge
- Montagna E.
- Montanari Alessandro
- Montanari Claudio
- Montanari David
- Montano Zetina Luis
- Moon Jarrett
- Mooney Michael
- Moor Alexandra
- Moreno Deywis
- Morris Casandra
- Mossey Chris
- Motuk Erdem
- Moura Célio
- Mousseau Joel
- Mu Wei
- Mualem Leon
- Mueller Justin
- Muether Mathew
- Mufson Stuart
- Muheim Franz
- Muir Alan
- Mulhearn Mike
- Munford Donnie
- Muramatsu Hajime
- Murphy Sebastien
- Musser Jim
- Méndez Diana
- Nachtman Jane
- Nagu Srishti
- Nalbandyan Mikayel
- Nandakumar Raja
- Naples Donna
- Narita Shinya
- Navas-Nicolás Diana
- Navrer-Agasson Anyssa
- Nayak Nitish
- Nebot-Guinot Miquel
- Negishi Kentaro
- Nelson Jeff
- Nesbit Jake
- Nessi Marzio
- Newbold David
- Newcomer Mitch
- Newhart Duane
- Newton Hannah
- Niccolo M.
- Nichol Ryan
- Nicolas-Arnaldos Francisco
- Nicoletta M.
- Niner Evan
- Nishimura Kurtis
- Norman Andrew
- Norrick Anne
- Northrop Rich
- Novella Pau
- Nowak Jaroslaw
- Oberling Michael
- Ochoa-Ricoux Juan Pedro
- Olivares Del Campo Andres
- Olivier Andrew
- Olshevskiy Alexander
- Onel Yasar
- Onishchuk Yuriy
- Ott Jordan
- Pagani Luca
- Pakvasa Sandip
- Palacio Guillermo
- Palamara Ornella
- Palestini Sandro
- Paley Jonathan
- Pallavicini Marco
- Palomares Carmen
- Palomino-Gallo Jose
- Pantic Emilija
- Paolone Vittorio
- Papadimitriou Vaia
- Papaleo Riccardo
- Papanestis Antonis
- Paramesvaran Sudarshan
- Parke Stephen
- Parsa Zohreh
- Parvu Mihaela
- Pascoli Silvia
- Pasqualini Laura
- Pasternak Jaroslaw
- Pater Joleen
- Patrick Cheryl
- Patrizii Laura
- Patterson Ryan
- Patton Simon John
- Patzak Thomas
- Paudel Ajib
- Paulos Bob
- Paulucci Laura
- Pavlovic Zarko
- Pawloski Greg
- Payne David
- Pec Viktor
- Peeters S.J. M.
- Pennacchio Elisabetta
- Penzo Aldo
- Peres Orlando
- Perry James
- Pershey Daniel
- Pessina Gianluigi
- Petrillo Gianluca
- Petta Catia
- Petti Roberto
- Piastra Francesco
- Pickering Luke
- Pietropaolo Francesco
- Plunkett Robert
- Poling Ronald
- Pons Xavier
- Poonthottathil Navaneeth
- Poppi F.
- Pordes Stephen
- Porter Joshua
- Potekhin Maxim
- Potenza Renato
- Potukuchi B.V. K.S.
- Pozimski Juergen
- Pozzato Michele
- Prakash Suprabh
- Prakash Tarun
- Prince Sebastien
- Pugnere Denis
- Qian Xin
- Queiroga Bazetto Maria Cecilia
- Raaf Jennifer L
- Radeka Veljko
- Rademacker Jonas
- Radics Balint
- Rafique Aleena
- Raguzin Eric
- Rai Mousam
- Rajaoalisoa Miriama
- Rakhno Igor
- Rakotonandrasana Andrianjafy Michaël
- Rakotondravohitra Laza
- Ramachers Yorck A
- Rameika Regina
- Ramirez Delgado Manuel Alejandro
- Ramson Bryan
- Rappoldi A.
- Raselli GL
- Ratoff Peter
- Raut Sanil
- Razakamiandra Rado Fanantenana
- Real Jean-Sebastien
- Rebel Brian
- Reggiani-Guzzo Marina
- Rehak Tyler
- Reichenbacher Juergen
- Reitzner S.D.
- Rejeb Sfar Haifa
- Renshaw Andrew
- Rescia Sergio
- Resnati Filippo
- Reynolds Aidan
- Riccio Ciro
- Riccobene Giorgio
- Rice L.C. J.
- Ricol Jean-Stephane
- Rigamonti Alberto
- Rigaut Yann-Axel
- Rivera David
- Rochester Leon
- Roda Marco
- Rodrigues Philip
- Rodriguez Alonso Manuel
- Rodriguez Bonilla Engelver
- Rodriguez Rondon Jairo
- Rosauro-Alcaraz Salvador
- Rosenberg Matt
- Rosier Philippe
- Roskovec Bedrich
- Rossella Massimo
- Rout Jogesh
- Roy Palash
- Roy Samiran
- Rubbia Andre
- Rubbia Carlo
- Rubio Francisco
- Russell Brooke
- Ruterbories Daniel
- Saakyan Ruben
- Sacerdoti Sabrina
- Safford Twymun
- Sahay Rahul
- Sahu Narendra
- Sala Paola
- Samios Nicholas
- Samoylov Oleg
- Sanchez Mayly
- Sanders David
- Sankey David
- Santana Samuel
- Santos-Maldonado Marvin
- Saoulidou Niki
- Sapienza Piera
- Sarasty Carlos
- Sarcevic Ina
- Savage Geoffrey
- Savinov Vladimir
- Scaramelli Alberto
- Scarff Andrew
- Scarpelli Andrea
- Schaffer Tom
- Schellman Heidi
- Schlabach Philip
- Schmitz David
- Scholberg Kate
- Schukraft Anne
- Segreto Ettore
- Sensenig Jon
- Seong Ilsoo
- Sergi Antonino
- Sgalaberna Davide
- Shaevitz Michael H
- Shafaq Sheeba
- Shamma Michael
- Sharankova Ralitsa
- Sharma Hans
- Sharma Rahul
- Sharma Rajeev
- Shaw Terri
- Shepherd-Themistocleous Claire
- Shin Seodong
- Shooltz Dean
- Shrock Robert
- Simard Laurent
- Simon F.
- Simos Nikolaos
- Sinclair James
- Sinev Gleb
- Singh Jaydip
- Singh Jyotsna
- Singh Venktesh
- Sipos Roland
- Sippach F.W.
- Sirri Gabriele
- Sitraka Andriaseta
- Siyeon Kim
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- Smith Erica
- Smith Paul
- Smolik Jan
- Smy Michael
- Snider E.L.
- Snopok Pavel
- Soares Nunes Mônica
- Sobel Henry
- Soderberg Mitch
- Solano Salinas Carlos
- Soleti S.
- Solomey Nicholas
- Solovov Vladimir
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- Soto-Oton Jose
- Sousa Alexandre
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- Spagliardi Fabio
- Spanu Maura
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- Spooner N.J. C.
- Spurgeon Kyle
- Staley Richard
- Stancari Michelle
- Stanco Luca
- Stanley Rose
- Stein Raul
- Steiner Herbert M
- Stewart James
- Stillwell Ben
- Stock Jason
- Stocker Francesca
- Stokes Tyler
- Strait Matthew
- Strauss Thomas
- Striganov Sergei
- Stuart Alexander
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- Summers Don
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- Sutera Concetta Maria
- Svoboda Robert
- Szczerbinska Barbara
- Szelc Andrzej
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- Tapia Oregui Beatriz
- Tapper Alexander
- Tariq Salman
- Tatar E.
- Tayloe Rex
- Teklu Abraham Meles
- Tenti Matteo
- Terao Kazuhiro
- Ternes Christoph
- Terranova Francesco
- Testera Gemma
- Thea Alessandro
- Thompson Joshua
- Thorn Craig
- Timm Steven C
- Todd Jacob
- Tonazzo Alessandra
- Torbunov Dmitri
- Torti Marta
- Tortola Mariam
- Tortorici Francesco
- Tosi N.
- Totani Dante
- Toups Matthew
- Touramanis Christos
- Travaglini R.
- Trevor Jason
- Trilov Stoyan
- Trzaska Wladyslaw
- Tsai Yun-Tse
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- Tufanli Serhan
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- Tyley E.
- Tzanov Martin
- Uchida Melissa
- Urheim Jon
- Usher Tracy
- Uzunyan Sergey
- Vagins Mark
- Vahle Patricia
- Valdiviesso Gustavo
- Valencia Edgar
- Valerio P.
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- Valle J.W. F.
- Vallecorsa Sofia
- Van Berg Rick
- Van de Water Richard
- Varanini Filippo
- Vargas Danaisis
- Varner Gary
- Vasel Justin
- Vasina Svetlana
- Vasseur Georges
- Vaughan Noah
- Vaziri Kamran
- Ventura Sandro
- Verdugo Antonio
- Vergani Stefano
- Vermeulen Milo
- Verzocchi Marco
- Vicenzi Matteo
- Vieira de Souza Henrique
- Vignoli Chiara
- Vilela Cristovao
- Viren Brett
- Vrba Tomas
- Wachala Tomasz
- Waldron Abigail
- Wallbank Michael
- Wang Hanguo
- Wang Jingbo
- Wang L.
- Wang M.H. L.S.
- Wang Yi
- Wang Yue
- Warburton Karl
- Warner David
- Wascko Morgan
- Waters David
- Watson Alan
- Weatherly Pierce
- Weber Alfons
- Weber Michele
- Wei Hanyu
- Weinstein Amanda
- Wenman Dan
- Wetstein Matthew
- White Andy
- Whitehead Leigh
- Whittington Denver
- Wilking Michael
- Wilkinson Callum
- Williams Zachary
- Wilson Fergus
- Wilson Robert
- Wolcott Jeremy
- Wongjirad Taritree
- Wood Anthony
- Wood Kevin
- Worcester Elizabeth
- Worcester Matthew
- Wret Clarence
- Wu Wanwei
- Wu Wenjie
- Xiao Yiwen
- Yandel Erin
- Yang Guang
- Yang Kang
- Yang Shaokai
- Yang Tingjun
- Yankelevich Alejandro
- Yershov Nikolai
- Yonehara Katsuya
- Young Tim
- Yu Bo
- Yu Haiwang
- Yu Jae
- Yuan Wenlong
- Zaki Rowan
- Zalesak Jaroslav
- Zambelli Laura
- Zamorano Bruno
- Zani Andrea
- Zazueta Luis
- Zeit Grace
- Zeller G.P.
- Zeller Geralyn
- Zennamo Joseph
- Zeug Kyle
- Zhang Chao
- Zhao Manhong
- Zhivun Elena
- Zhu Guanying
- Zilberman Perri
- Zimmerman Eric
- Zito Marco
- Zucchelli Stefano
- Zuklin Josef
- Zutshi Vishnu
- Zwaska Robert
- Publication venue
- 'MDPI AG'
- Publication date
- 01/01/2021
- Field of study
International audienceThe Deep Underground Neutrino Experiment (DUNE) is an international, world-class experiment aimed at exploring fundamental questions about the universe that are at the forefront of astrophysics and particle physics research. DUNE will study questions pertaining to the preponderance of matter over antimatter in the early universe, the dynamics of supernovae, the subtleties of neutrino interaction physics, and a number of beyond the Standard Model topics accessible in a powerful neutrino beam. A critical component of the DUNE physics program involves the study of changes in a powerful beam of neutrinos, i.e., neutrino oscillations, as the neutrinos propagate a long distance. The experiment consists of a near detector, sited close to the source of the beam, and a far detector, sited along the beam at a large distance. This document, the DUNE Near Detector Conceptual Design Report (CDR), describes the design of the DUNE near detector and the science program that drives the design and technology choices. The goals and requirements underlying the design, along with projected performance are given. It serves as a starting point for a more detailed design that will be described in future documents
Outcomes from elective colorectal cancer surgery during the SARS‐CoV‐2 pandemic
- Author
- 6\u11f\ufcc\ufc H
- 6fner D
- 6hlberger L
- \u106oza I
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- Qatora MS
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- Rajaretnam N
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- Ramamoorthy R
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- Ramos\u2010De la Medina Antonio
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- Roy Mahapatra S
- Royle T
- Rubio\u2010Perez I
- Ruivo A
- Ruiz Escobar A
- Ruiz Soriano M
- Ruiz\u2010Mar\uedn M
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- Ruteg\ue5rd M
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- Ruzzenente A
- Ryan \uc9
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- Ryska O
- S\ue1nchez del Pueblo C
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- Sapre D
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- Sarjanoja E
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- Scotton G
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- Seebah K
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- Serevina OL
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- Vidya Raghavan
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- Vieira A
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- Villalabeitia Ateca I
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- Vovola F
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- Yetkin SG
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- Yousof EA
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- Zambon M
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- Zubaidi AM
- Publication venue
- 'Wiley'
- Publication date
- 01/01/2020
- Field of study
Aim
This study aimed to describe the change in surgical practice and the impact of SARS-CoV-2 on mortality after surgical resection of colorectal cancer during the initial phases of the SARS-CoV-2 pandemic.
Method
This was an international cohort study of patients undergoing elective resection of colon or rectal cancer without preoperative suspicion of SARS-CoV-2. Centres entered data from their first recorded case of COVID-19 until 19 April 2020. The primary outcome was 30-day mortality. Secondary outcomes included anastomotic leak, postoperative SARS-CoV-2 and a comparison with prepandemic European Society of Coloproctology cohort data.
Results
From 2073 patients in 40 countries, 1.3% (27/2073) had a defunctioning stoma and 3.0% (63/2073) had an end stoma instead of an anastomosis only. Thirty-day mortality was 1.8% (38/2073), the incidence of postoperative SARS-CoV-2 was 3.8% (78/2073) and the anastomotic leak rate was 4.9% (86/1738). Mortality was lowest in patients without a leak or SARS-CoV-2 (14/1601, 0.9%) and highest in patients with both a leak and SARS-CoV-2 (5/13, 38.5%). Mortality was independently associated with anastomotic leak (adjusted odds ratio 6.01, 95% confidence interval 2.58–14.06), postoperative SARS-CoV-2 (16.90, 7.86–36.38), male sex (2.46, 1.01–5.93), age >70 years (2.87, 1.32–6.20) and advanced cancer stage (3.43, 1.16–10.21). Compared with prepandemic data, there were fewer anastomotic leaks (4.9% versus 7.7%) and an overall shorter length of stay (6 versus 7 days) but higher mortality (1.7% versus 1.1%).
Conclusion
Surgeons need to further mitigate against both SARS-CoV-2 and anastomotic leak when offering surgery during current and future COVID-19 waves based on patient, operative and organizational risks
Global variation in postoperative mortality and complications after cancer surgery: a multicentre, prospective cohort study in 82 countries
- Author
- A Yacoub Mina
- A. Adam Mohammed
- A. Nassar Mahmoud
- A.Nemer Ayoob
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- NA N.A.
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- Wogensen Fredrik
- Wondoh Paul M.
- Wong Florence
- Wong Hsu Ven
- Wong Jane J
- Wong Jeremy
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- Wong Sui-Weng
- Wong Tsz Lun Ernest
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- Woon-Shoo-Tong Xiao-Ming Sarah
- Wren Sherry
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- Xanthopoulou Georgia
- Yabut Kenneth
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- Yaghi Nadine
- Yaghi Yasmine
- Yahia Mohamed Ali Mohamed
- Yakushkina Al'ona
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- Yang P Zichu
- Yanikoglu Erkan
- Yanni Fady
- Yates Charlotte
- Ye Geoffrey
- Yeen Chin Leow
- Yemez Kürsat
- Yenidünya Nilüfer
- Yenli Edwin
- Yeo Jeremy
- Yeoh Andrea
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- Yildirim Reyyan
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- You Lucia
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- Yu Kristin
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- Yusuf Baasil
- Yüksel Osman
- Zabiyaka Mikhail
- Zachariah Sanoop Koshy
- Zafar Syed Nabeel
- Zaffaroni Gloria
- Zahra Baryab
- Zahran Diaaaldin
- Zakaria Andee Dzulkarnaen
- Zakaria Mai
- Zakaria Omar
- Zakaria Zaidi
- Zambrana Campos Vanesa
- Zammit Matthew
- Zanini Nicola
- Zara Vlu Jean
- Zara Vlu Jean
- Zarti Heba
- Zarzycki Piotr
- Zattoni Davide
- Zavala Gabriela
- Zawahrah Hassan
- Zeiton Asaid
- Zeko Amanda
- Zeng Zhi
- Zeromskas Paulius
- Zhang Geoffrey
- Zhivkov Evgeni
- Zid Esraa
- Zidan Ahmed Mohy
- Zielasek Christian
- Zilinskas Justas
- Zimmermann Bernd
- Ziprin Paul
- Zizzo Maurizio
- Zografos George
- Zoikas Athanasios
- Zorrilla Matilla Laura Patricia
- Zoulamoglou Menelaos
- Zreeg Dafer
- Zub-Pokrowiecka Anna
- Zubiaurre Vanessa
- Zuhdy Mohammed
- Zuikyte Diana
- Zuloaga Fernandez del Valle Carlos Jose
- Zulu Stanley
- Ângelo Miguel
- Älgå Andreas
- Çolak Elif
- Ümarik Toomas
- Šatkauskas Mindaugas
- Škimelyte Monika
- Šlenfuktas Vygintas
- Šuman Oliver
- Žatecký Jan
- Žumbakys Žygimantas
- Župan Domagoj
- Publication venue
- 'Elsevier BV'
- Publication date
- 30/01/2021
- Field of study
© 2021 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY-NC-ND 4.0 licenseBackground: 80% of individuals with cancer will require a surgical procedure, yet little comparative data exist on early outcomes in low-income and middle-income countries (LMICs). We compared postoperative outcomes in breast, colorectal, and gastric cancer surgery in hospitals worldwide, focusing on the effect of disease stage and complications on postoperative mortality. Methods: This was a multicentre, international prospective cohort study of consecutive adult patients undergoing surgery for primary breast, colorectal, or gastric cancer requiring a skin incision done under general or neuraxial anaesthesia. The primary outcome was death or major complication within 30 days of surgery. Multilevel logistic regression determined relationships within three-level nested models of patients within hospitals and countries. Hospital-level infrastructure effects were explored with three-way mediation analyses. This study was registered with ClinicalTrials.gov, NCT03471494. Findings: Between April 1, 2018, and Jan 31, 2019, we enrolled 15 958 patients from 428 hospitals in 82 countries (high income 9106 patients, 31 countries; upper-middle income 2721 patients, 23 countries; or lower-middle income 4131 patients, 28 countries). Patients in LMICs presented with more advanced disease compared with patients in high-income countries. 30-day mortality was higher for gastric cancer in low-income or lower-middle-income countries (adjusted odds ratio 3·72, 95% CI 1·70–8·16) and for colorectal cancer in low-income or lower-middle-income countries (4·59, 2·39–8·80) and upper-middle-income countries (2·06, 1·11–3·83). No difference in 30-day mortality was seen in breast cancer. The proportion of patients who died after a major complication was greatest in low-income or lower-middle-income countries (6·15, 3·26–11·59) and upper-middle-income countries (3·89, 2·08–7·29). Postoperative death after complications was partly explained by patient factors (60%) and partly by hospital or country (40%). The absence of consistently available postoperative care facilities was associated with seven to 10 more deaths per 100 major complications in LMICs. Cancer stage alone explained little of the early variation in mortality or postoperative complications. Interpretation: Higher levels of mortality after cancer surgery in LMICs was not fully explained by later presentation of disease. The capacity to rescue patients from surgical complications is a tangible opportunity for meaningful intervention. Early death after cancer surgery might be reduced by policies focusing on strengthening perioperative care systems to detect and intervene in common complications. Funding: National Institute for Health Research Global Health Research Unit
Effects of hospital facilities on patient outcomes after cancer surgery: an international, prospective, observational study
- Author
- A Yacoub Mina
- A. Adam Mohammed
- A. Nassar Mahmoud
- A.Nemer Ayoob
- Aahlin Eirik Kjus
- Ab Rahim Mohd Fadliyazid
- Abad Gurumeta Alfredo
- Abad-Motos Ane
- Abang Jamari Dyg Zahratul Hamrak
- Abantanga Francis
- Abarca Sol
- Abazid Eias
- Abbas Abbas
- Abbas Khalid
- Abbas Mohammad Monir
- Abbasy Jibran
- Abbosh Ali
- Abd Karim Muhammad Fairuz Shah
- Abd Wahab Haidar Hadri
- Abd Barook
- Abdalei Abdulwahab
- Abdalla Ahmed Elkamel Ahmed
- Abdallah Aya
- AbdAllah Mostafa Salim Mohamed
- Abdel Malik Abu Baker
- Abdelhady Mousa Heba
- Abdelhady Samar
- Abdelhakim Ahmed
- Abdelkader Muhammad
- Abdelkawy Shaza
- Abdelkhalek Mohamed
- Abdellatif Esraa
- Abdelmaksoud Tawakel Noura
- Abdelmohsen Naglaa
- Abdelmotaleb Ibrahem
- Abdelrazek Aly
- Abdelsalam Israa
- Abdelshakour Mahmoud
- Abdelwahed Ahmed Mohamed
- Abdou Abdulrahman Osama
- Abdou Alrawy
- Abdou Hossam
- Abdul Aziz Mohamed Rezal
- Abdul Aziz Nora
- Abdulgawad Almogy Mariam
- Abdulla Mazin A.
- Abdullah Muhammad Tariq
- Abdullahi Lawal
- Abdullayev Seymur
- Abed Saeed
- Abelló David
- Abiola Olajide
- Abo mahadi Asmaa'
- Abo-khammash Areej
- Abou Chaar Mohamad K.
- Abou El.soud Moustafa Ramadan
- Abouelsoad Nervana
- Abraham Joyner
- Abreu da Silva Alberto
- Abu Ahammala Ayman B.
- Abu Al Amrain Mahmoud
- Abu Al-saleem Hasan
- Abu Alamrain Abdulwhhab
- Abu Alqumboz Amjad
- Abu Ataya Ahmed
- Abu hallalah Muad fathi khalleefah
- Abu Jamie Najlaa
- Abu Jayyab Israa
- Abu shua'ib Rana
- Abu Zainah Baraa
- Abu-Nimeh Samar
- Abu-Rous Mohammed R.
- Abu-srour Abrar
- Abuelhatal Hasan
- Abuelqomboz Ayham
- Abuhilal Baseel
- Abuhlaiga Ma'aly
- Abujamra Saleh
- Abukhalaf Sadi A.
- Abusalem Lana
- AbuSirrees Mahmoud
- Acevedo Veronica
- Acharya Rajgopal
- Achkasov Sergey
- Acosta Eric
- Adamo Karin
- Adamou Harissou
- Adams Jamie
- Adams Lawrence
- Adawi Samer
- Adebanjo Ademola
- Adel Marina
- Adel Sawsan
- Ademuyiwa Adesoji
- Ademuyiwa Adesoji O
- Adenuga Adedire
- Aderounmu Adewale
- Adesanya Opeoluwa
- Adesina Alaba
- Adesunkanmi Abdul-Rashid
- Adeyeye Ademola
- Adidharma Peter
- Adisa Adewale
- Adisa Adewale O
- Adnan Nour
- Afifi Amr Abdelghani
- Afifi Eman
- Afolayan Michael Olatunji
- Afzal Asma
- Agarwal Arnav
- Agarwal Raksheeth
- Agbakwuru Augustine
- Agbeko Anita Eseenam
- Aguilar Martinez Maria Del Mar
- Aguilera Maria Lorena
- Aguilera-Arevalo Maria-Lorena
- Ahlqvist Sandra
- Ahmad Izzuddin Ahmad Imran
- Ahmad Kasim
- Ahmad Sarwat
- Ahmed Ahmedgaber
- Ahmed Hazem Abdelkarem
- Ahmed Mariam
- Ahmed Nabila
- Ahmed Zahra
- Ainoa Eppu
- Aithie Joanna M S
- Ajani Costanza
- Ajao Akinlabi
- Ajiboye Anthony
- Ajmera Ankit
- Akande Oluwatosin
- Akaydin Elif
- Akbaba Ata Cem
- Akbar Sana Amir
- Akeel Nouf
- Akeem Aderogba Adeleke
- Akin Alp
- Akinkuolie Akinbolaji
- Akisheva Aygulya
- Akitikori Mabel Temisanren
- Akrida Ioanna
- Aktas Melik Kagan
- Al basos Iyad
- Al Farsi Maryam
- Al Nassrallah Majdi
- Al Sagheir Eman
- Al Saqqa Sara
- Al Saqqa Sara
- Al-Allaf Omar
- Al-Busaidi Ibrahim S.
- Al-Dhufri Ali
- Al-Himyari Hamza S.
- Al-Masri Mahmoud
- Al-Najjar Hani
- Al-Sabbagh Yusra
- Al-Shwaikh Samar
- Al-Slaibi Ibrahim
- Al-Taher Raed
- Al-Tammam Hiba
- Alabuzidi Aya
- Alagha Othman
- Alammarin Mohammad
- Alapatt John
- Alasttal Mohammed
- Alatise Olusegun Isaac
- Albaggar Marwa
- Albahnasawi Moath A.
- Albati Naif
- Alberga Anna
- Alberts Justin
- AlBsoul Ahmad
- Albsoul Nader
- Alcorta Rodrigo
- Alejandre Villalobos Cristina
- Alemdağ Gökçe nur
- Alexander Philip
- Alfarra Nada
- Alfitory Asma
- Alhabil Belal
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- Dominguez Joaquina
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- Ekpete Ogbonnia
- Ekwen Gerald
- El Aroussi Nouhaila
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- Elbeshina Aya Elseed
- Elblbessy Mahmood
- Eldeep Ahmed
- Eldeep Mostafa
- Eldmaty Asmaa
- Eldoseuky mohammed Amany
- Elemile Peter
- Elewaily Mohamed Ibrahim Elsayed
- Elfaituri Taha
- Elfallal Ahmed
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- Elkhadragy Ahmed
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- Elmokadem Aya
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- Elsayed Mai
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- Elshafei Houssein
- Elshafey Ahmed
- Elshaibani Mahmoud
- Elshatby Bassant
- Elshawy Mohamed Elemam
- Elsherbeny Mohammed Yasser
- Elsherif Fawzia
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- Elsobky Hager
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- Eltoum Ruba
- Elzanfaly Ali Abdelazez
- Emara Eman
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- Eraslan Huseyin
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- Espin-Basany Eloy
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- Espinosa-Bravo Martin
- Esposito Giovanni
- Essam Ibrahim El Desouki Muhammad Ahmed Muhammad
- Essam Eman
- Estalagem Inês
- Estevez Tesouro José
- Eswaye Haitem
- Etchill Eric
- Etonyeaku Amarachukwu
- Eusebio Zegarra Ivan Edward
- Ezzat Helmy
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- Fahmawee Toqa
- Fairfield Cameron J
- Falato Armando
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- Falco Nicolò
- Fareleira Ana
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- Farina Pablo
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- Fernandez-Diaz Maria Jose
- Fernandez-Hevia Maria
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- Fernández Veiga Maria Pilar
- Ferrari Guglielmo
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- Ferreira Pedro
- Ferrero Esther
- Ferri Lorenzo
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- Figueiredo Ana Gabriela
- Finlay Ben
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- Forero-Torres Alexander
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- Foschi Diego
- Foster Deshka S
- Fox Benjamin
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- Franczak Paula
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- García Cardo Juan
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- García Danilo
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- Garden O James
- Garfinkle Richard
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- Ghellai Ali M.
- Ghonaim Mennatullah
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- Gnintedeme Olivier Tchianze
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- Hall Timothy
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- Iddles Emma
- Idowu Ayodeji
- Idris Tarig
- Ignatavicius Povilas
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- Warwicker Sean
- Wason Deepender
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- Watts Daniel
- Weiser Thomas G
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- Williams Christopher Yee Khang
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- Wineberg Devorah
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- Winoto Hadi
- Winter Beatty Jasmine
- Winter Des
- Wisal Maham
- Wisselink Daan
- Wogensen Fredrik
- Wondoh Paul M.
- Wong Florence
- Wong Hsu Ven
- Wong Jane J
- Wong Jeremy
- Wong Lai Fen
- Wong Michael Pak-Kai
- Wong Sui-Weng
- Wong Tsz Lun Ernest
- Wood Lauren
- Woon-Shoo-Tong Xiao-Ming Sarah
- Wren Sherry
- Wuraola Funmilola
- Xanthopoulou Georgia
- Yabut Kenneth
- Yacoub Aseel
- Yaghi Nadine
- Yaghi Yasmine
- Yahia Mohamed Ali Mohamed
- Yakushkina Al'ona
- Yalçinkaya Ali
- Yang P Zichu
- Yanikoğlu Erkan
- Yanni Fady
- Yates Charlotte
- Ye Geoffrey
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- Yenli Edwin
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- Yildirim Reyyan
- Yildiz Alp
- Yilmaz Duygu
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- Yong Shun Qi
- Yoong Andrel
- Yorke Joseph
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- You Lucia
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- Yousry Basant
- Yozgatli Tahir Koray
- Yu Kristin
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- Yusuf Baasil
- Yüksel Osman
- Zabiyaka Mikhail
- Zachariah Sanoop Koshy
- Zafar Syed Nabeel
- Zaffaroni Gloria
- Zahra Baryab
- Zahran Diaaaldin
- Zakaria Andee Dzulkarnaen
- Zakaria Mai
- Zakaria Omar
- Zakaria Zaidi
- Zambrana Campos Vanesa
- Zammit Matthew
- Zanini Nicola
- Zara Vlu Jean
- Zarti Heba
- Zarzycki Piotr
- Zattoni Davide
- Zavala Gabriela
- Zawahrah Hassan
- Zeiton Asaid
- Zeko Amanda
- Zeng Zhi
- Zeromskas Paulius
- Zhang Geoffrey
- Zhivkov Evgeni
- Zid Esraa
- Zidan Ahmed Mohy
- Zielasek Christian
- Zilinskas Justas
- Zimmermann Bernd
- Ziprin Paul
- Zizzo Maurizio
- Zografos George
- Zoikas Athanasios
- Zorrilla Matilla Laura Patricia
- Zoulamoglou Menelaos
- Zreeg Dafer
- Zub-Pokrowiecka Anna
- Zubiaurre Vanessa
- Zuhdy Mohammed
- Zuikyte Diana
- Zuloaga Fernandez del Valle Carlos Jose
- Zulu Stanley
- Ângelo Miguel
- Älgå Andreas
- Çolak Elif
- Ümarik Toomas
- Čepuliené Daiva
- Şahin Can
- Šatkauskas Mindaugas
- Škimelytè Monika
- Šlenfuktas Vygintas
- Šuman Oliver
- Žatecký Jan
- Žumbakys Žygimantas
- Župan Domagoj
- Publication venue
- 'Elsevier BV'
- Publication date
- 01/07/2022
- Field of study
© 2022 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 licenseBackground: Early death after cancer surgery is higher in low-income and middle-income countries (LMICs) compared with in high-income countries, yet the impact of facility characteristics on early postoperative outcomes is unknown. The aim of this study was to examine the association between hospital infrastructure, resource availability, and processes on early outcomes after cancer surgery worldwide. Methods: A multimethods analysis was performed as part of the GlobalSurg 3 study—a multicentre, international, prospective cohort study of patients who had surgery for breast, colorectal, or gastric cancer. The primary outcomes were 30-day mortality and 30-day major complication rates. Potentially beneficial hospital facilities were identified by variable selection to select those associated with 30-day mortality. Adjusted outcomes were determined using generalised estimating equations to account for patient characteristics and country-income group, with population stratification by hospital. Findings: Between April 1, 2018, and April 23, 2019, facility-level data were collected for 9685 patients across 238 hospitals in 66 countries (91 hospitals in 20 high-income countries; 57 hospitals in 19 upper-middle-income countries; and 90 hospitals in 27 low-income to lower-middle-income countries). The availability of five hospital facilities was inversely associated with mortality: ultrasound, CT scanner, critical care unit, opioid analgesia, and oncologist. After adjustment for case-mix and country income group, hospitals with three or fewer of these facilities (62 hospitals, 1294 patients) had higher mortality compared with those with four or five (adjusted odds ratio [OR] 3·85 [95% CI 2·58–5·75]; p<0·0001), with excess mortality predominantly explained by a limited capacity to rescue following the development of major complications (63·0% vs 82·7%; OR 0·35 [0·23–0·53]; p<0·0001). Across LMICs, improvements in hospital facilities would prevent one to three deaths for every 100 patients undergoing surgery for cancer. Interpretation: Hospitals with higher levels of infrastructure and resources have better outcomes after cancer surgery, independent of country income. Without urgent strengthening of hospital infrastructure and resources, the reductions in cancer-associated mortality associated with improved access will not be realised. Funding: National Institute for Health and Care Research
Reconstruction of interactions in the ProtoDUNE-SP detector with Pandora
- Author
- Abed Abud Adam
- Abi Babak
- Acciarri Roberto
- Acero Mario
- Adames Marcio
- Adamov George
- Adamowski Mark
- Adams David
- Adinolfi Marco
- Adriano Cris
- Aduszkiewicz Antoni
- Aguilar Jessica
- Ahmad Zubayer
- Ahmed Jhanzeb
- Aimard Benjamin
- Akbar Faiza
- Ali-Mohammadzadeh Behnam
- Allison Kyle
- Alonso Monsalve Saul
- Alrashed Munera
- Alt Christoph
- Alton Andrew
- Alvarez Rodrigo
- Amedo Pablo
- Anderson John
- Andreopoulos Costas
- Andreotti Mirco
- Andrews Michael P.
- Andrianala Fenompanirina
- Andringa Sofia
- Anfimov Nikolay
- Ankowski Artur
- Antoniassi Marcelo
- Antonova Maria
- Antoshkin Alexander
- Antusch Stefan
- Aranda-Fernandez Alfredo
- Arellano Luciano
- Arnold Lukas
- Arroyave Manuel
- Asaadi Jonathan
- Asquith Lily
- Aurisano Adam
- Aushev Vladimir
- Autiero Dario
- Ayala Lara Victor
- Ayala-Torres Marco Alberto
- Ayalatorres M.
- Azfar Farrukh
- Back Ashley
- Back Henning
- Back John
- Backhouse Chris
- Bagaturia Iuri
- Bagby Linda
- Balashov Nikita
- Balasubramanian Supraja
- Baldi Pierre
- Baller Bruce
- Bambah Bindu
- Barao Fernando
- Barenboim Gabriela
- Barker Gary J.
- Barkhouse Wayne
- Barnes Christopher
- Barr Giles
- Barranco Monarca Juan
- Barros Adilson
- Barros Nuno
- Barrow Joshua
- Basharina-Freshville Anastasia
- Bashyal Amit
- Basque Vincent
- Batchelor Charlie
- Battat James
- Battisti Federico
- Bay Fatih
- Bazetto Maria Cecilia
- Bazo Alba José Luis
- Bazo J.L.
- Beacom John
- Bechetoille Edouard
- Behera Biswaranjan
- Belchior Batista das Chagas Ewerton
- Bellantoni Leo
- Bellettini Giorgio
- Bellini Vincenzo
- Beltramello Olga
- Benekos Nektarios
- Benitez Montiel Carlos
- Bento Neves Francisco
- Berger Joshua
- Berkman Sophie
- Bernardini Paolo
- Berner Roman
- Bersani Andrea
- Bertolucci Sergio
- Betancourt Minerba
- Betancur Rodríguez Amalia
- Bevan Adrian
- Bezawada Yashwanth
- Bezerra Anibal
- Bezerra Thiago
- Bhardwaj Akhil
- Bhatnagar Vipin
- Bhattacharjee Maharnab
- Bhattarai Devesh
- Bhuller Shyam
- Bhuyan Bipul
- Biagi Simone
- Bian Jianming
- Biassoni Matteo
- Biery Kurt
- Bilki Burak
- Bishai Mary
- Bitadze Alexander
- Blake Andrew
- Blaszczyk Flor de Maria
- Blazey Gerald C.
- Blucher Edward
- Boissevain Jan
- Bolognesi Sara
- Bolton Timothy
- Bomben Luca
- Bonesini Maurizio
- Bonilla-Diaz Cesar
- Bonini Filiberto
- Booth Alexander
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- Borkum Aran
- Bostan Nilay
- Bour Petr
- Boyden Daniel
- Bracinik Juraj
- Braga Davide
- Brailsford Dominic
- Branca Antonio
- Brandt Andrew
- Bremer Johan
- Brew Christopher
- Brice Stephen
- Brizzolari Claudia
- Bromberg Carl
- Brooke Jim
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- Brunetti Maria
- Buchanan Norman
- Budd Howard
- Butorov Ilia
- Cagnoli Irene
- Cai Tejin
- Caiulo Davide
- Calabrese Roberto
- Calafiura Paolo
- Calcutt Jacob
- Calin Marius
- Calvez Steven
- Calvo Enrique
- Caminata Alessio
- Campos Benitez Axel
- Caratelli David
- Carber Daniel
- Carceller Juan Miguel
- Carini Gabriella
- Carlus Bruno
- Carneiro Mateus
- Carniti Paolo
- Caro Terrazas Ivan
- Carranza Hector
- Carroll Thomas
- Castaño Forero Javier
- Castillo Andrés
- Castromonte Cesar
- Catano-Mur Erika
- Cattadori Carla
- Cavalier Fabien
- Cavallaro Giuseppe
- Cavanna Flavio
- Centro Sandro
- Cerati Giuseppe
- Cervelli Alberto
- Cervera Villanueva Anselmo
- Chalifour Michel
- Chappell Andrew
- Chardonnet Etienne
- Charitonidis Nikolas
- Chatterjee Animesh
- Chattopadhyay Subhasish
- Chavarry Neyra Michael Steve
- Chen Hucheng
- Chen Mu-Chun
- Chen Yifan
- Chen Zheyang
- Chen-Wishart Zachary
- Cheon Yoolim
- Cherdack Daniel
- Chi Cheng-Yi
- Childress Sam
- Chirco Robert
- Chiriacescu Ana
- Cho Kihyeon
- Choate Sarah
- Chokheli David
- Chong Pooi
- Christensen Anne
- Christian David
- Christodoulou Georgios
- Chukanov Artem
- Chung Moses
- Church Eric
- Cicero Valentina
- Clarke Peter
- Cline Gordon
- Coan Thomas
- Cocco Alfredo
- Coelho Joao
- Collot Johann
- Colton Nicole
- Conley Erin
- Conley Robert
- Conrad Janet M.
- Convery Mark
- Copello Simone
- Cova Paolo
- Cremaldi Lucien
- Cremonesi Linda
- Crespo-Anadón José
- Crisler Michael
- Cristaldo Esteban
- Crnkovic Jason
- Cross Ryan
- Cudd Andrew
- Cuesta Clara
- Cui Yanou
- Cussans David
- da Motta Helio
- da Silva Peres Leonardo
- Dai Joel
- Dalager Olivia
- David Claire
- David Quentin
- Davies Gavin
- Davini Stefano
- Dawson Jaime
- de Bonis Isabelle
- de Gouvea Andre
- de Holanda Pedro
- de Icaza Astiz Iker
- de Jong Paul
- de Leo Veronica
- de Lurgio Patrick
- de Mello Neto Joao
- de Roeck Albert
- de Romeri Valentina
- de Souza Greg
- De I.
- De Kaushik
- De P.
- De P.C.
- De Shruti
- De V.
- Debbins Paul
- Decowski M. Patrick
- Deisting Alexander
- Delbart Alain
- Delepine David
- Delgado Maritza
- Dell'Acqua Andrea
- Delmonte Nicola
- Demuth David
- Dennis Steve
- Densham Chris
- Deptuch Grzegorz
- Devi Ritu
- Dharmapalan Ranjan
- Di Capua Francesco
- Di Domenico Antonio
- Di Domizio Sergio
- Di Giulio Letizia
- Di Noto Lea
- Di A.
- Dias Marco
- Diaz Jorge S.
- Ding Pengfei
- Dirkx Glenn
- Distefano Carla
- Diurba Richard
- Diwan Milind
- Djurcic Zelimir
- Doering Dionisio
- Dolan Stephen
- Dolek Furkan
- Dolinski Michelle J.
- Domine Laura
- Donon Yann
- Douglas Daniel
- Dragone Angelo
- Drake Gary
- Drielsma Francois
- Duarte Laura Cristina
- Duchesneau Dominique
- Duffy Kirsty
- Dunne Patrick
- Dutta Bhaskar
- Duyang Hongyue
- Dvornikov Olexiy
- Dwyer Daniel A.
- Dyshkant Alexandre S.
- Díaz Felix
- Eads Michael
- Earle Antony
- Edmunds Daniel
- Eisch Jonathan
- Emberger Lorenz
- Emery Sandrine
- Englezos Panagiotis
- Ereditato Antonio
- Erjavec Tyler
- Escobar Carlos O.
- Escudero Sanchez Lorena
- Eurin Guillaume
- Evans Justin
- Ewart Erin
- Ezeribe Anthony
- Fahey Kevin
- Fajardo L.S. Gomez
- Falcone Andrea
- Fani Mattia
- Farnese Christian
- Farzan Yasaman
- Fedoseev Dmitry
- Felix Julian
- Feng Yue
- Fernandez Menendez Pablo
- Fernandez-Martinez Enrique
- Ferraro Federico
- Fields Laura
- Filip Peter
- Filthaut Frank
- Fine Robert
- Fiorillo Giuliana
- Fiorini Massimiliano
- Fischer Vincent
- Fitzpatrick Rory
- Flanagan Will
- Fleming Bonnie
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- Fogarty Sam
- Foreman Will
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- Freestone Julian
- Fried Jack
- Friedland Alex
- Fuess Stu
- Furic Ivan
- Furman Krzysztof
- Furmanski Andrew
- Gabrielli Alessandro
- Gago A.M.
- Gallagher Hugh
- Gallas Alexandre
- Gallego-Ros Ana
- Gallegoros A.
- Gallice Niccolo
- Galymov Vyacheslav
- Gamberini Enrico
- Gamble Trevor
- Ganacim Francisco
- Gandhi Raj
- Ganguly Sudeshna
- Gao Fan
- Gao Shanshan
- Garcia-Gamez Diego
- García- M.A.
- García-Peris Miguel
- Gardiner Steven
- Gastler Dan
- Gauvreau Jean-Luc
- Gauzzi Paolo
- Ge Guanqun
- Geffroy Nicolas
- Gelli Bruno
- Gendotti Adamo
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- Warburton Karl
- Warner David
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- Watson Alan
- Wawrowska Klaudia
- Weatherly Pierce
- Weber Alfons
- Weber Michele
- Wei Hanyu
- Weinstein Amanda
- Wenman Dan
- Wetstein Matthew
- White Andy
- Whitehead Leigh
- Whittington Denver
- Wilking Michael
- Wilkinson Alexander
- Wilkinson Callum
- Williams Zachary
- Wilson Fergus
- Wilson Robert
- Wisniewski William
- Wolcott Jeremy
- Wongjirad Taritree
- Wood Anthony
- Wood Kevin
- Worcester Elizabeth
- Worcester Matthew
- Wresilo Karolina
- Wret Clarence
- Wu Wanwei
- Wu Wenjie
- Xiao Yiwen
- Yaeggy Barbara
- Yandel Erin
- Yang Guang
- Yang Kang
- Yang Tingjun
- Yankelevich Alejandro
- Yershov Nikolai
- Yonehara Katsuya
- Yoon Young Soo
- Young Tim
- Yu Bo
- Yu Haiwang
- Yu Hongzhao
- Yu Jae
- Yu Yiding
- Yuan Wenlong
- Zaki Rowan
- Zalesak Jaroslav
- Zambelli Laura
- Zamorano Bruno
- Zani Andrea
- Zazueta Luis
- Zeller Geralyn
- Zennamo Joseph
- Zeug Kyle
- Zhang Chao
- Zhang Shuaixiang
- Zhang Yuze
- Zhao Manhong
- Zhivun Elena
- Zhu Guanying
- Zimmerman Eric
- Zucchelli Stefano
- Zuklin Josef
- Zutshi Vishnu
- Zwaska Robert
- Publication venue
- HAL CCSD
- Publication date
- 18/07/2022
- Field of study
International audienceThe Pandora Software Development Kit and algorithm libraries provide pattern-recognition logic essential to the reconstruction of particle interactions in liquid argon time projection chamber detectors. Pandora is the primary event reconstruction software used at ProtoDUNE-SP, a prototype for the Deep Underground Neutrino Experiment far detector. ProtoDUNE-SP, located at CERN, is exposed to a charged-particle test beam. This paper gives an overview of the Pandora reconstruction algorithms and how they have been tailored for use at ProtoDUNE-SP. In complex events with numerous cosmic-ray and beam background particles, the simulated reconstruction and identification efficiency for triggered test-beam particles is above 80% for the majority of particle type and beam momentum combinations. Specifically, simulated 1 GeV/c charged pions and protons are correctly reconstructed and identified with efficiencies of 86.1±0.6% and 84.1±0.6%, respectively. The efficiencies measured for test-beam data are shown to be within 5% of those predicted by the simulation
Reconstruction of interactions in the ProtoDUNE-SP detector with Pandora
- Author
- Abed Abud Adam
- Abi Babak
- Acciarri Roberto
- Acero Mario
- Adames Marcio
- Adamov George
- Adamowski Mark
- Adams David
- Adinolfi Marco
- Adriano Cris
- Aduszkiewicz Antoni
- Aguilar Jessica
- Ahmad Zubayer
- Ahmed Jhanzeb
- Aimard Benjamin
- Akbar Faiza
- Ali-Mohammadzadeh Behnam
- Allison Kyle
- Alonso Monsalve Saul
- AlRashed Munera
- Alt Christoph
- Alton Andrew
- Alvarez Rodrigo
- Amedo Pablo
- Anderson John
- Andreopoulos Costas
- Andreotti Mirco
- Andrews Michael P.
- Andrianala Fenompanirina
- Andringa Sofia
- Anfimov Nikolay
- Ankowski Artur
- Antoniassi Marcelo
- Antonova Maria
- Antoshkin Alexander
- Antusch Stefan
- Aranda-Fernandez Alfredo
- Arellano Luciano
- Arnold Lukas
- Arroyave Manuel
- Asaadi Jonathan
- Asquith Lily
- Aurisano Adam
- Aushev Vladimir
- Autiero Dario
- Ayala Lara Victor
- Ayala-Torres Marco Alberto
- AyalaTorres M.
- Azfar Farrukh
- Back Ashley
- Back Henning
- Back John
- Backhouse Chris
- Bagaturia Iuri
- Bagby Linda
- Balashov Nikita
- Balasubramanian Supraja
- Baldi Pierre
- Baller Bruce
- Bambah Bindu
- Barao Fernando
- Barenboim Gabriela
- Barker Gary J.
- Barkhouse Wayne
- Barnes Christopher
- Barr Giles
- Barranco Monarca Juan
- Barros Adilson
- Barros Nuno
- Barrow Joshua
- Basharina-Freshville Anastasia
- Bashyal Amit
- Basque Vincent
- Batchelor Charlie
- Battat James
- Battisti Federico
- Bay Fatih
- Bazetto Maria Cecilia
- Bazo Alba José Luis
- Bazo J.L.
- Beacom John
- Bechetoille Edouard
- Behera Biswaranjan
- Belchior Batista das Chagas Ewerton
- Bellantoni Leo
- Bellettini Giorgio
- Bellini Vincenzo
- Beltramello Olga
- Benekos Nektarios
- Benitez Montiel Carlos
- Bento Neves Francisco
- Berger Joshua
- Berkman Sophie
- Bernardini Paolo
- Berner Roman
- Bersani Andrea
- Bertolucci Sergio
- Betancourt Minerba
- Betancur Rodríguez Amalia
- Bevan Adrian
- Bezawada Yashwanth
- Bezerra Anibal
- Bezerra Thiago
- Bhardwaj Akhil
- Bhatnagar Vipin
- Bhattacharjee Maharnab
- Bhattarai Devesh
- Bhuller Shyam
- Bhuyan Bipul
- Biagi Simone
- Bian Jianming
- Biassoni Matteo
- Biery Kurt
- Bilki Burak
- Bishai Mary
- Bitadze Alexander
- Blake Andrew
- Blaszczyk Flor de Maria
- Blazey Gerald C.
- Blucher Edward
- Boissevain Jan
- Bolognesi Sara
- Bolton Timothy
- Bomben Luca
- Bonesini Maurizio
- Bonilla-Diaz Cesar
- Bonini Filiberto
- Booth Alexander
- Boran Fatma
- Bordoni Stefania
- Borkum Aran
- Bostan Nilay
- Bour Petr
- Boyden Daniel
- Bracinik Juraj
- Braga Davide
- Brailsford Dominic
- Branca Antonio
- Brandt Andrew
- Bremer Johan
- Brew Christopher
- Brice Stephen
- Brizzolari Claudia
- Bromberg Carl
- Brooke Jim
- Bross Alan
- Brunetti Giulia
- Brunetti Maria
- Buchanan Norman
- Budd Howard
- Butorov Ilia
- Cagnoli Irene
- Cai Tejin
- Caiulo Davide
- Calabrese Roberto
- Calafiura Paolo
- Calcutt Jacob
- Calin Marius
- Calvez Steven
- Calvo Enrique
- Caminata Alessio
- Campos Benitez Axel
- Caratelli David
- Carber Daniel
- Carceller Juan Miguel
- Carini Gabriella
- Carlus Bruno
- Carneiro Mateus
- Carniti Paolo
- Caro Terrazas Ivan
- Carranza Hector
- Carroll Thomas
- Castaño Forero Javier
- Castillo Andrés
- Castromonte Cesar
- Catano-Mur Erika
- Cattadori Carla
- Cavalier Fabien
- Cavallaro Giuseppe
- Cavanna Flavio
- Centro Sandro
- Cerati Giuseppe
- Cervelli Alberto
- Cervera Villanueva Anselmo
- Chalifour Michel
- Chappell Andrew
- Chardonnet Etienne
- Charitonidis Nikolas
- Chatterjee Animesh
- Chattopadhyay Subhasish
- Chavarry Neyra Michael Steve
- Chen Hucheng
- Chen Mu-Chun
- Chen Yifan
- Chen Zheyang
- Chen-Wishart Zachary
- Cheon Yoolim
- Cherdack Daniel
- Chi Cheng-Yi
- Childress Sam
- Chirco Robert
- Chiriacescu Ana
- Cho Kihyeon
- Choate Sarah
- Chokheli David
- Chong Pooi
- Christensen Anne
- Christian David
- Christodoulou Georgios
- Chukanov Artem
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- Weber Michele
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- Wetstein Matthew
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- Whitehead Leigh
- Whittington Denver
- Wilking Michael
- Wilkinson Alexander
- Wilkinson Callum
- Williams Zachary
- Wilson Fergus
- Wilson Robert
- Wisniewski William
- Wolcott Jeremy
- Wongjirad Taritree
- Wood Anthony
- Wood Kevin
- Worcester Elizabeth
- Worcester Matthew
- Wresilo Karolina
- Wret Clarence
- Wu Wanwei
- Wu Wenjie
- Xiao Yiwen
- Yaeggy Barbara
- Yandel Erin
- Yang Guang
- Yang Kang
- Yang Tingjun
- Yankelevich Alejandro
- Yershov Nikolai
- Yonehara Katsuya
- Yoon Young Soo
- Young Tim
- Yu Bo
- Yu Haiwang
- Yu Hongzhao
- Yu Jae
- Yu Yiding
- Yuan Wenlong
- Zaki Rowan
- Zalesak Jaroslav
- Zambelli Laura
- Zamorano Bruno
- Zani Andrea
- Zazueta Luis
- Zeller Geralyn
- Zennamo Joseph
- Zeug Kyle
- Zhang Chao
- Zhang Shuaixiang
- Zhang Yuze
- Zhao Manhong
- Zhivun Elena
- Zhu Guanying
- Zimmerman Eric
- Zucchelli Stefano
- Zuklin Josef
- Zutshi Vishnu
- Zwaska Robert
- Publication venue
- HAL CCSD
- Publication date
- 29/06/2022
- Field of study
International audienceThe Pandora Software Development Kit and algorithm libraries provide pattern-recognition logic essential to the reconstruction of particle interactions in liquid argon time projection chamber detectors. Pandora is the primary event reconstruction software used at ProtoDUNE-SP, a prototype for the Deep Underground Neutrino Experiment far detector. ProtoDUNE-SP, located at CERN, is exposed to a charged-particle test beam. This paper gives an overview of the Pandora reconstruction algorithms and how they have been tailored for use at ProtoDUNE-SP. In complex events with numerous cosmic-ray and beam background particles, the simulated reconstruction and identification efficiency for triggered test-beam particles is above 80% for the majority of particle type and beam momentum combinations. Specifically, simulated 1 GeV/c charged pions and protons are correctly reconstructed and identified with efficiencies of 86.1±0.6% and 84.1±0.6%, respectively. The efficiencies measured for test-beam data are shown to be within 5% of those predicted by the simulation
Reconstruction of interactions in the ProtoDUNE-SP detector with Pandora
- Author
- Abed Abud Adam
- Abi Babak
- Acciarri Roberto
- Acero Mario
- Adames Marcio
- Adamov George
- Adamowski Mark
- Adams David
- Adinolfi Marco
- Adriano Cris
- Aduszkiewicz Antoni
- Aguilar Jessica
- Ahmad Zubayer
- Ahmed Jhanzeb
- Aimard Benjamin
- Akbar Faiza
- Ali-Mohammadzadeh Behnam
- Allison Kyle
- Alonso Monsalve Saul
- Alrashed Munera
- Alt Christoph
- Alton Andrew
- Alvarez Rodrigo
- Amedo Pablo
- Anderson John
- Andreopoulos Costas
- Andreotti Mirco
- Andrews Michael P.
- Andrianala Fenompanirina
- Andringa Sofia
- Anfimov Nikolay
- Ankowski Artur
- Antoniassi Marcelo
- Antonova Maria
- Antoshkin Alexander
- Antusch Stefan
- Aranda-Fernandez Alfredo
- Arellano Luciano
- Arnold Lukas
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- Barkhouse Wayne
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- Blazey Gerald C.
- Blucher Edward
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- de Bonis Isabelle
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- de Roeck Albert
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- de Souza Greg
- De I.
- De Kaushik
- De P.
- De P.C.
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- De V.
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- Dwyer Daniel A.
- Dyshkant Alexandre S.
- Díaz Felix
- Eads Michael
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- Fajardo L.S. Gomez
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- Gallagher Hugh
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- Gallegoros A.
- Gallice Niccolo
- Galymov Vyacheslav
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- Hamacherbaumann P.
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- Leitner Matthaeus
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- Li Yichen
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- Losecco John M.
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- Usher Tracy
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- Valder Sammy
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- Valencia Edgar
- Valentim Rodolfo
- Vallari Zoya
- Vallazza Erik
- Valle Jose
- Vallecorsa Sofia
- van Berg Rick
- van de Water Richard
- Vanegas Forero David
- Vannerom David
- Varanini Filippo
- Vargas Oliva Danaisis
- Varner Gary
- Vasel Justin
- Vasina Svetlana
- Vasseur Georges
- Vaughan Noah
- Vaziri Kamran
- Ventura Sandro
- Verdugo Antonio
- Vergani Stefano
- Vermeulen Milo
- Verzocchi Marco
- Vicenzi Matteo
- Vieira de Souza Henrique
- Vignoli Chiara
- Vilela Cristovao
- Viren Brett
- Vrba Tomas
- Wachala Tomasz
- Waldron Abigail
- Wallbank Michael
- Wallis Connor
- Walton Tammy
- Wang Hanguo
- Wang Jingbo
- Wang Li
- Wang Michael
- Wang Xiaoran
- Wang Yi
- Wang Yue
- Warburton Karl
- Warner David
- Wascko Morgan
- Waters David
- Watson Alan
- Wawrowska Klaudia
- Weatherly Pierce
- Weber Alfons
- Weber Michele
- Wei Hanyu
- Weinstein Amanda
- Wenman Dan
- Wetstein Matthew
- White Andy
- Whitehead Leigh
- Whittington Denver
- Wilking Michael
- Wilkinson Alexander
- Wilkinson Callum
- Williams Zachary
- Wilson Fergus
- Wilson Robert
- Wisniewski William
- Wolcott Jeremy
- Wongjirad Taritree
- Wood Anthony
- Wood Kevin
- Worcester Elizabeth
- Worcester Matthew
- Wresilo Karolina
- Wret Clarence
- Wu Wanwei
- Wu Wenjie
- Xiao Yiwen
- Yaeggy Barbara
- Yandel Erin
- Yang Guang
- Yang Kang
- Yang Tingjun
- Yankelevich Alejandro
- Yershov Nikolai
- Yonehara Katsuya
- Yoon Young Soo
- Young Tim
- Yu Bo
- Yu Haiwang
- Yu Hongzhao
- Yu Jae
- Yu Yiding
- Yuan Wenlong
- Zaki Rowan
- Zalesak Jaroslav
- Zambelli Laura
- Zamorano Bruno
- Zani Andrea
- Zazueta Luis
- Zeller Geralyn
- Zennamo Joseph
- Zeug Kyle
- Zhang Chao
- Zhang Shuaixiang
- Zhang Yuze
- Zhao Manhong
- Zhivun Elena
- Zhu Guanying
- Zimmerman Eric
- Zucchelli Stefano
- Zuklin Josef
- Zutshi Vishnu
- Zwaska Robert
- Publication venue
- HAL CCSD
- Publication date
- 18/07/2022
- Field of study
International audienceThe Pandora Software Development Kit and algorithm libraries provide pattern-recognition logic essential to the reconstruction of particle interactions in liquid argon time projection chamber detectors. Pandora is the primary event reconstruction software used at ProtoDUNE-SP, a prototype for the Deep Underground Neutrino Experiment far detector. ProtoDUNE-SP, located at CERN, is exposed to a charged-particle test beam. This paper gives an overview of the Pandora reconstruction algorithms and how they have been tailored for use at ProtoDUNE-SP. In complex events with numerous cosmic-ray and beam background particles, the simulated reconstruction and identification efficiency for triggered test-beam particles is above 80% for the majority of particle type and beam momentum combinations. Specifically, simulated 1 GeV/c charged pions and protons are correctly reconstructed and identified with efficiencies of 86.1±0.6% and 84.1±0.6%, respectively. The efficiencies measured for test-beam data are shown to be within 5% of those predicted by the simulation
Reconstruction of interactions in the ProtoDUNE-SP detector with Pandora
- Author
- Abed Abud Adam
- Abi Babak
- Acciarri Roberto
- Acero Mario
- Adames Marcio
- Adamov George
- Adamowski Mark
- Adams David
- Adinolfi Marco
- Adriano Cris
- Aduszkiewicz Antoni
- Aguilar Jessica
- Ahmad Zubayer
- Ahmed Jhanzeb
- Aimard Benjamin
- Akbar Faiza
- Ali-Mohammadzadeh Behnam
- Allison Kyle
- Alonso Monsalve Saul
- Alrashed Munera
- Alt Christoph
- Alton Andrew
- Alvarez Rodrigo
- Amedo Pablo
- Anderson John
- Andreopoulos Costas
- Andreotti Mirco
- Andrews Michael P.
- Andrianala Fenompanirina
- Andringa Sofia
- Anfimov Nikolay
- Ankowski Artur
- Antoniassi Marcelo
- Antonova Maria
- Antoshkin Alexander
- Antusch Stefan
- Aranda-Fernandez Alfredo
- Arellano Luciano
- Arnold Lukas
- Arroyave Manuel
- Asaadi Jonathan
- Asquith Lily
- Aurisano Adam
- Aushev Vladimir
- Autiero Dario
- Ayala Lara Victor
- Ayala-Torres Marco Alberto
- Ayalatorres M.
- Azfar Farrukh
- Back Ashley
- Back Henning
- Back John
- Backhouse Chris
- Bagaturia Iuri
- Bagby Linda
- Balashov Nikita
- Balasubramanian Supraja
- Baldi Pierre
- Baller Bruce
- Bambah Bindu
- Barao Fernando
- Barenboim Gabriela
- Barker Gary J.
- Barkhouse Wayne
- Barnes Christopher
- Barr Giles
- Barranco Monarca Juan
- Barros Adilson
- Barros Nuno
- Barrow Joshua
- Basharina-Freshville Anastasia
- Bashyal Amit
- Basque Vincent
- Batchelor Charlie
- Battat James
- Battisti Federico
- Bay Fatih
- Bazetto Maria Cecilia
- Bazo Alba José Luis
- Bazo J.L.
- Beacom John
- Bechetoille Edouard
- Behera Biswaranjan
- Belchior Batista das Chagas Ewerton
- Bellantoni Leo
- Bellettini Giorgio
- Bellini Vincenzo
- Beltramello Olga
- Benekos Nektarios
- Benitez Montiel Carlos
- Bento Neves Francisco
- Berger Joshua
- Berkman Sophie
- Bernardini Paolo
- Berner Roman
- Bersani Andrea
- Bertolucci Sergio
- Betancourt Minerba
- Betancur Rodríguez Amalia
- Bevan Adrian
- Bezawada Yashwanth
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- Bezerra Thiago
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- Blake Andrew
- Blaszczyk Flor de Maria
- Blazey Gerald C.
- Blucher Edward
- Boissevain Jan
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- Bolton Timothy
- Bomben Luca
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- Charitonidis Nikolas
- Chatterjee Animesh
- Chattopadhyay Subhasish
- Chavarry Neyra Michael Steve
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- Cherdack Daniel
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- da Motta Helio
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- García- M.A.
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- Gomes Ricardo
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- Gomez L.
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- Gonzalez-Lopez Manuel
- González Caamaño David
- González D.
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- Illingworth Robert
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- Wood Kevin
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- Worcester Matthew
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- Wret Clarence
- Wu Wanwei
- Wu Wenjie
- Xiao Yiwen
- Yaeggy Barbara
- Yandel Erin
- Yang Guang
- Yang Kang
- Yang Tingjun
- Yankelevich Alejandro
- Yershov Nikolai
- Yonehara Katsuya
- Yoon Young Soo
- Young Tim
- Yu Bo
- Yu Haiwang
- Yu Hongzhao
- Yu Jae
- Yu Yiding
- Yuan Wenlong
- Zaki Rowan
- Zalesak Jaroslav
- Zambelli Laura
- Zamorano Bruno
- Zani Andrea
- Zazueta Luis
- Zeller Geralyn
- Zennamo Joseph
- Zeug Kyle
- Zhang Chao
- Zhang Shuaixiang
- Zhang Yuze
- Zhao Manhong
- Zhivun Elena
- Zhu Guanying
- Zimmerman Eric
- Zucchelli Stefano
- Zuklin Josef
- Zutshi Vishnu
- Zwaska Robert
- Publication venue
- HAL CCSD
- Publication date
- 18/07/2022
- Field of study
International audienceThe Pandora Software Development Kit and algorithm libraries provide pattern-recognition logic essential to the reconstruction of particle interactions in liquid argon time projection chamber detectors. Pandora is the primary event reconstruction software used at ProtoDUNE-SP, a prototype for the Deep Underground Neutrino Experiment far detector. ProtoDUNE-SP, located at CERN, is exposed to a charged-particle test beam. This paper gives an overview of the Pandora reconstruction algorithms and how they have been tailored for use at ProtoDUNE-SP. In complex events with numerous cosmic-ray and beam background particles, the simulated reconstruction and identification efficiency for triggered test-beam particles is above 80% for the majority of particle type and beam momentum combinations. Specifically, simulated 1 GeV/c charged pions and protons are correctly reconstructed and identified with efficiencies of 86.1±0.6% and 84.1±0.6%, respectively. The efficiencies measured for test-beam data are shown to be within 5% of those predicted by the simulation