4-quinolones as a starting point for anti-parasitic and anti-viral agents

Im Mittelpunkt dieser Arbeit stand die Substanzgruppe der 4-Chinolone, die zum einen über ein intrinsisches antiparasitäres Potenzial gegen Erreger wie Plasmodien, Trypanosomen oder Mykobakterien verfügt und zum anderen über gezielte Substitution auch die Möglichkeit zu strukturellen Modifikationen bietet. Vorrangiges Ziel dieser Arbeit war der Aufbau einer strukturell möglichst diversen Substanzbibliothek und deren sukzessive Testung innerhalb des SFB630. Auf diese Weise sollten neue antiparasitäre Leitstrukturen als Ausgangspunkt für weitere strukturelle Optimierungen erhalten werden. Der Chinolon-Grundkörper sollte hierzu gemäß Gould-Jacobs-Reaktion aufgebaut werden. Zur Synthese diverser Amid-Derivate wurden verschiedene Synthese-strategien verfolgt. Alternativ wurden, ebenfalls über eine nukleophile Substitution (Piperidin-Derivat), in 7-Position modifizierte Verbindungen generiert, die unter Verwendung des Kupplungs-reagenzes PyBOB (Benzotriazol-1-yloxytri-pyrrolidinophosphonium Hexafluorphosphat) in die entsprechenden 1-Alkyl-1,4-dihydro-7-piperidinyl-4-oxo-chinolin-3-carboxamide transformiert wurden. Die in dieser Arbeit generierte Substanzbibliothek wurde anschließend innerhalb des SFB630 getestet. Hierbei zeigte sich, dass die Amidierung der 3-Carbonsäurefunktion eine Steigerung der antimikrobiellen Wirkung gegen Trypanosoma brucei mit sich brachte. Es kristallisierten sich aktive Verbindungen heraus, die erstmals eine Aktivität derartiger Derivate gegen Trypanosomen belegen und so zukünftig als Leitstrukturen für weitere strukturelle Modifizierungen herangezogen werden können. Mit dem in dieser Arbeit angewandten Random-Chemistry-Verfahren sollte in die Suche nach neuen Leitstrukturen gezielt das Zufallsprinzip integriert werden bzw. es sollten neue aktive Verbindungen generiert werden, die über die klassischen kombinatorischen Syntheseschemata bzw. die gängigen Reaktionsmechanismen nur schwer zugänglich sind. Eine Reihe von Fluorchinolon-Derivaten wurden in verschiedenen Lösungsmitteln, meist DMSO mit Zusätzen von Methanol oder Chloroform, gelöst bzw. suspendiert und anschließend einer ionisierenden γ-Strahlung von 500 kGy ausgesetzt. Die Testung mittels HPLC / FCPC generierter Fraktionen ergab zum Teil höhere antitrypanosomale Aktivitäten als die der korrespondie¬renden Ausgangsverbindungen. Eine Aktivität gegen Makrophagen konnte nicht festgestellt werden. Darüber hinaus wurde im Rahmen dieser Arbeit in Kooperation mit Prof. Schneider-Schaulies an der Identifizierung viraler Fusionsinhibitoren ausgewählter Paramyxoviren (Masern-Virus, Nipah-Virus) gearbeitet. Aus einer Ähnlichkeitssuche, basierend auf dem literaturbekannten Masern-Fusionsinhibitor 2-(4-Chlorphenyl)-N-(2-hydroxy-4-nitrophenyl)acetamid (AM-2), konnte die Struktur eines Chinolinamides identifiziert werden, woraufhin die generierte Substanzbibliothek auf antiviral-aktive Verbindungen gescreent werden sollte. Die Kristallstruktur des Nipah-Virus-Fusionsproteins wurde im Jahre 2006 aufgeklärt. Mit diesen Informationen konnte mittels Molecular-Modelling eine Bindetasche innerhalb der HR1-Domäne des F-Proteins identifiziert werden, mit der die erzielten inhibitorischen Aktivitäten gut in Einklang gebracht werden konnten. Diese Bindetasche befindet sich in einem Bereich weitreichender Umstrukturierungsvorgängen: Durch die Einlagerung des Liganden 7-(4-Carbamoyl-piperidin-1-yl)-N-(2,4-dichlorbenzyl)-1-cyclopropyl-6-fluor-4-oxo-1,4-dihydro-chinolin-3-carboxamid, in diese hydrophobe Tasche werden Wechselwirkungen mit den korrespondierenden Aminosäuren in der HR2-Domäne und so auch dessen Anlagerung unterbunden. In 1 μmolarer Konzentration konnte die Fusionsaktivität um 42% reduziert werden, die verwendeten Referenzsubstanz (OX-1) erzielte in selbiger Konzentration keine Wirkung.The present work focuses on the chemical class of 4-quinolones, which possess intrinsic antiparasitic activity against pathogens such as plasmodia, trypanosomes and mycobacteria and is amenable to chemical modification. The primary objective was to build up a library of structurally diverse compounds and to screen them subsequently within the SFB630 against the aforementioned parasites to obtain leads and subsequent lead optimisation. The quinolone skeletons were built up using the Gould-Jacobs’ procedure starting with the correspondingly substituted aniline derivatives. For the synthesis of the desired amide derivatives different strategies were applied. Piperidinyl-substituents at position 7 were introduced by nucleophilic substitution and the resulting compounds were coupled to the corresponding amides using benzotriazol-1-yl-oxy-tris-pyrrolidino-phosphonium hexafluorophosphat (PyBOP) as activating agent. Screening of the library produced revealed that amidation of the 3-carboxylic acid function produced an increase in the antimicrobial activity against Trypanosoma brucei. Some compounds exhibited high activity against trypanosomes and can be regarded as lead structure for further modifications. The random chemistry method was used search deliberately in this work to look for new prototypes or produce new active compounds that are difficult to access through classical combinational synthetic pathways and conventional reaction mechanisms. A series of fluoroquinolone derivatives were dissolved or suspended in various solvents, mainly DMSO with the addition of methanol or chloroform, and were then exposed to ionizing γ-radiation of 500 kGy. The fractions generated were separated by HPLC / FCPC and screened against trypanosomes and macrophages. Some fractions proved to have higher anti-trypanosomal activity than the corresponding precursor compounds. No activity against macrophages was found. Furthermore, in cooperation with Prof. Schneider-Schaulies, another part of this work focused on the identification of viral fusion inhibitors regarding distinct paramyxoviruses like measles and nipah viruses. A similarity search based on a known inhibitor of the fusion process - 2-(4-chlorophenyl)-N-(2-hydroxy-4-nitrophenyl)acetamide (AM-2) - led to the identification of the structure of a β-keto-carboxylic amide whereupon the designed library would be screened for compounds with antiviral activity. The structure of the nipah fusion protein in its post-fusion state was solved in 2006. By subsequent molecular modelling experiments a corresponding target structure within the HR1 domain of the F-protein was identified and concorded well with the obtained testing results. According to the location, this binding pocket is located where extensive conformational changes take place, mediating membrane fusion: The identified ligand 7-(4-carbamoyl-piperidin-1-yl)-N-(2,4-dichlorobenzyl)-1-cyclopropyl-6-fluoro-4-oxo-1,4-dihydro-quinoline-3-carboxamide can perfectly dock into this cavity and, by means of forces such as hydrogen bonds and hydrophobic effects, it could prevent specific interactions with the corresponding amino acids between the HR1 and HR2 domain and modify conformational rearrangements. A concentration of 1 μmol decreases fusion activity of 42% while the reference ligand OX-1 at the same concentration shows no effects

Conditional reduction of adult born doublecortin-positive neurons reversibly impairs selective behaviours

Adult neurogenesis occurs in the adult mammalian subventricular zone (SVZ) along the walls of the lateral ventricles and the subgranular zone (SGZ) of the hippocampal dentate gyrus. While a burgeoning body of research implicates adult neurogenesis in olfactory bulb (OB) - and hippocampal-related behaviors, the precise function continues to elude. To further assess the behavioral importance of adult neurogenesis, we herein generated a novel inducible transgenic mouse model of adult neurogenesis reduction where mice with CreERT2 under doublecortin (DCX) promoter control were crossed with mice where diphtheria toxin A (DTA) was driven by the Rosa26 promoter. Activation of DTA, through the administration of tamoxifen (TAM), results in a specific reduction of DCX+ immature neurons in both the hippocampal dentate gyrus and OB. We show that the decrease of DCX+ cells causes impaired social discrimination ability in both young adult (from 3 months) and middle (from 10 months) aged mice. Furthermore, these animals showed an age-independent altered coping behavior in the Forced Swim Test without clear changes in anxiety-related behavior. Notably, these behavior changes were reversible on repopulating the neurogenic zones with DCX+ cells on cessation of the tamoxifen treatment, demonstrating the specificity of this effect. Overall, these results support the notion that adult neurogenesis plays a role in social memory and in stress coping but not necessarily in anxiety-related behavior

Synthesis and Structure–Activity Relationships of New Quinolone-Type Molecules against Trypanosoma brucei

Human African trypanosomiasis (HAT) or sleeping sickness is caused by two subspecies of Trypanosoma brucei, Trypanosoma brucei gambiense, and Trypanosoma brucei rhodesiense and is one of Africa’s old plagues. It causes a huge number of infections and cases of death per year because, apart from limited access to health services, only inefficient chemotherapy is available. Since it was reported that quinolones such as ciprofloxacin show antitrypanosomal activity, a novel quinolone-type library was synthesized and tested. The biological evaluation illustrated that 4-quinolones with a benzylamide function in position 3 and cyclic or acyclic amines in position 7 exhibit high antitrypanosomal activity. Structure–activity relationships (SAR) are established to identify essential structural elements. This analysis led to lead structure <b>29</b>, which exhibits promising in vitro activity against T. b. brucei (IC₅₀ = 47 nM) and T. b. rhodesiense (IC₅₀ = 9 nM) combined with low cytotoxicity against macrophages J774.1. Screening for morphological changes of trypanosomes treated with compounds <b>19</b> and <b>29</b> suggested differences in the morphology of mitochondria of treated cells compared to those of untreated cells. Segregation of the kinetoplast is hampered in trypanosomes treated with these compounds; however, topoisomerase II is probably not the main drug target

Meis1 effects on motor phenotypes and the sensorimotor system in mice.

MEIS1 is a developmental transcription factor linked to restless legs syndrome (RLS) in genome-wide association studies. RLS is a movement disorder leading to severe sleep reduction and with significant impact on the quality-of-life of patients. In genome-wide association studies, MEIS1 has consistently been the gene with the highest effect size and functional studies suggest a disease-relevant downregulation. Therefore, haploinsufficiency of Meis1 could be the most potential system for modeling RLS in animals. We used heterozygous Meis1 knock-out mice to study the effects of Meis1 haploinsufficiency on mouse behavioral and neurological phenotypes, and to relate the findings to human RLS. We exposed the Meis1-deficient mice to assays of motor, sensorimotor and cognitive ability and assessed the effect of a dopaminergic receptor 2/3 agonist commonly used in the treatment of RLS. The mutant mice showed a pattern of circadian hyperactivity, compatible with human RLS. Moreover, we discovered a replicable prepulse inhibition (PPI) deficit in the Meis1-deficient animals. In addition, these mice were hyposensitive to the PPI-reducing effect of the dopaminergic receptor agonist, highlighting a role of Meis1 in the dopaminergic system. Other reported phenotypes include enhanced social recognition at an older age that was not related to alterations in adult olfactory bulb neurogenesis previously shown to be implicated in this behavior. In conclusion, the Meis1-deficient mice fulfill some of the hallmarks of an RLS animal model, and revealed the role of Meis1 in sensorimotor gating and in the dopaminergic systems modulating it

Synthesis and structure-activity relationships of new quinolone-type molecules against Trypanosoma brucei

Human African trypanosomiasis (HAT) or sleeping sickness is caused by two subspecies of Trypanosoma brucei , Trypanosoma brucei gambiense , and Trypanosoma brucei rhodesiense and is one of Africa's old plagues. It causes a huge number of infections and cases of death per year because, apart from limited access to health services, only inefficient chemotherapy is available. Since it was reported that quinolones such as ciprofloxacin show antitrypanosomal activity, a novel quinolone-type library was synthesized and tested. The biological evaluation illustrated that 4-quinolones with a benzylamide function in position 3 and cyclic or acyclic amines in position 7 exhibit high antitrypanosomal activity. Structure-activity relationships (SAR) are established to identify essential structural elements. This analysis led to lead structure 29, which exhibits promising in vitro activity against T. b. brucei (IC(50) = 47 nM) and T. b. rhodesiense (IC(50) = 9 nM) combined with low cytotoxicity against macrophages J774.1. Screening for morphological changes of trypanosomes treated with compounds 19 and 29 suggested differences in the morphology of mitochondria of treated cells compared to those of untreated cells. Segregation of the kinetoplast is hampered in trypanosomes treated with these compounds; however, topoisomerase II is probably not the main drug targe