68 research outputs found
Electron quantum metamaterials in van der Waals heterostructures
In recent decades, scientists have developed the means to engineer synthetic
periodic arrays with feature sizes below the wavelength of light. When such
features are appropriately structured, electromagnetic radiation can be
manipulated in unusual ways, resulting in optical metamaterials whose function
is directly controlled through nanoscale structure. Nature, too, has adopted
such techniques -- for example in the unique coloring of butterfly wings -- to
manipulate photons as they propagate through nanoscale periodic assemblies. In
this Perspective, we highlight the intriguing potential of designer
sub-electron wavelength (as well as wavelength-scale) structuring of electronic
matter, which affords a new range of synthetic quantum metamaterials with
unconventional responses. Driven by experimental developments in stacking
atomically layered heterostructures -- e.g., mechanical pick-up/transfer
assembly -- atomic scale registrations and structures can be readily tuned over
distances smaller than characteristic electronic length-scales (such as
electron wavelength, screening length, and electron mean free path). Yet
electronic metamaterials promise far richer categories of behavior than those
found in conventional optical metamaterial technologies. This is because unlike
photons that scarcely interact with each other, electrons in subwavelength
structured metamaterials are charged, and strongly interact. As a result, an
enormous variety of emergent phenomena can be expected, and radically new
classes of interacting quantum metamaterials designed
Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids
Plasmids can mediate horizontal gene transfer of antibiotic resistance, virulence genes, and other adaptive factors across bacterial populations. Here, we analyze genomic composition and pairwise sequence identity for over 10,000 reference plasmids to obtain a global map of the prokaryotic plasmidome. Plasmids in this map organize into discrete clusters, which we call plasmid taxonomic units (PTUs), with high average nucleotide identity between its members. We identify 83 PTUs in the order Enterobacterales, 28 of them corresponding to previously described archetypes. Furthermore, we develop an automated algorithm for PTU identification, and validate its performance using stochastic blockmodeling. The algorithm reveals a total of 276 PTUs in the bacterial domain. Each PTU exhibits a characteristic host distribution, organized into a six-grade scale (I-VI), ranging from plasmids restricted to a single host species (grade I) to plasmids able to colonize species from different phyla (grade VI). More than 60% of the plasmids in the global map are in groups with host ranges beyond the species barrier.This work was funded by grant BFU2017-86378-P from the Spanish MINEC
The diagnostic accuracy of dopamine transporter SPECT imaging to detect nigrostriatal cell loss in patients with Parkinson’s disease or clinically uncertain parkinsonism: a systematic review
Examining the Heterogeneous Genome Content of Multipartite Viruses BMV and CCMV by Native Mass Spectrometry
Since the concept was first introduced by Brian Chait and co-workers in 1991, mass spectrometry of proteins and protein complexes under non-denaturing conditions (native MS) has strongly developed, through parallel advances in instrumentation, sample preparation, and data analysis tools. However, the success rate of native MS analysis, particularly in heterogeneous mega-Dalton (MDa) protein complexes, still strongly depends on careful instrument modification. Here, we further explore these boundaries in native mass spectrometry, analyzing two related endogenous multipartite viruses: the Brome Mosaic Virus (BMV) and the Cowpea Chlorotic Mottle Virus (CCMV). Both CCMV and BMV are approximately 4.6 megadalton (MDa) in mass, of which approximately 1 MDA originates from the genomic content of the virion. Both viruses are produced as mixtures of three particles carrying different segments of the genome, varying by approximately 0.1 MDA in mass (~2%). This mixture of particles poses a challenging analytical problem for high-resolution native MS analysis, given the large mass scales involved. We attempt to unravel the particle heterogeneity using both Q-TOF and Orbitrap mass spectrometers extensively modified for analysis of very large assemblies. We show that manipulation of the charging behavior can provide assistance in assigning the correct charge states. Despite their challenging size and heterogeneity, we obtained native mass spectra with resolved series of charge states for both BMV and CCMV, demonstrating that native MS of endogenous multipartite virions is feasible. [Figure: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s13361-016-1348-6) contains supplementary material, which is available to authorized users
Wake-active neurons across aging and neurodegeneration: a potential role for sleep disturbances in promoting disease
Novel Approach Identifies SNPs in SLC2A10 and KCNK9 with Evidence for Parent-of-Origin Effect on Body Mass Index
Marja-Liisa Lokki työryhmien Generation Scotland Consortium, LifeLines Cohort Study ja GIANT Consortium jäsenPeer reviewe
Therapeutic options for nocturnal problems in Parkinson’s disease and atypical parkinsonian disorders
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