Chromatin enrichment of histone marks H4Ac and H3K9me3 in TP53 gene domain in breast cells

In non-cancerous breast cell lines HB2 and MCF10A the TP53 gene is localized inside a relatively small ~ 50 kb loop domain delimited by two S/MARs. Aim. To analyze the chromatin markers H4Ac and H3K9me3 of these two S/MARs and of the TP53 gene P1 promoter in different breast cells lines. Methods. We used chromatin immunoprecipitation (ChIP) to characterize the chromatin status of these S/MARs elements in breast non-cancerous cell lines HB2 and MCF10A and cancerous MCF-7, MDA-MB-231, BT-474 and T47D cell lines, by chromatin enrichment of H4Ac and H3K9me3 epigenetic markers, hallmarks of open and closed chromatin, respectively. Results. We found that these chromatin epigenetic markers are differentially distributed in S/MARs for all analyzed breast cell lines. Conclusions. We found no correlation between S/MARs and chromatin epige- netic status, suggesting that nuclear matrix fixation and chromatin status can be independent. High enrichment of H3K9me3 in the TP53 gene P1 promoter region in MCF-7, could explain lower levels of the TP53 expression, described earlier by our group.У неонкогенних клітинних лініях HB2 і MCF10A ген TP53 локалізований всередині відносно невеликої області (~ 50 тис. пар нуклеотидів) петлі домену, обмеженої двома S/MARs (ділянками, асо- ційованими з матриксом). Мета. Проаналізувати хроматинові маркери H4Ac і H3K9me3 в означених S/MARs і P1 промоторі гена TP53 в різних клітинних лініях молочної залози. Методи. Використано імунопреципітацію хроматину (чип) для характеристики стану хроматину елементів S/MARs у неонкогенних клітинних лініях HB2 і MCF10A та злоякісних клітинних лініях MCF-7, MDA-MB-231, БТ-474 і T47D за допомогою H4Ac і H3K9me3 епігенетичних маркерів за ознаками відкритого і закритого хроматину відповідно. Результати. Виявлено, що зазначені епігенетичні маркери нерівномірно розподілені в S/MARs для всіх проаналізованих клітинних ліній молочної залози. Висновки. Не знайдено кореляції в епігенетичному статусі S/MARs і хроматина, що дозволяє зробити припущення, що фіксація ядерного матриксу і статус хроматину можуть бути незалежними. Суттєве збагачення H3K9me3 P1 промоторної областігена TP53 в клітинній лінії MCF-7 може бути причиною нижчих рівнів експресії TP53, описаних раніше нашою групою.В неонкогенных клеточных линиях HB2 и MCF10A ген TP53 расположен внутри петли домена:относительно небольшой области (~ 50 тыс. пар нуклеотидов), ограниченной двумя S/MARs (участками, ассоциированными с матриксом). Цель. Проанализировать маркеры хроматина H4Ac и H3K9me3 в указанных S/MARs и P1 промотре гена TP53 в различных клеточных линиях молочной железы. Методы. Использовали иммунопреципитацию хроматина (чип) для характеристики состояния хроматина элементов S/MARs в неонкогенных клеточных линиях HB2 и MCF10A и злокачественных клеточных линиях MCF-7, MDA-MB-231, БТ-474 и T47D с помощью H4Ac и H3K9me3 эпигенетических маркеров по признакам открытого и закрытого хроматина соответственно. Результаты. Указанные эпигенетические маркеры неравномерно распределены в исследованных S/MARs для всех анализируемых линий клеток молочной железы. Выводы. Не выявлена корреляция в эпигенетическом статусе S/MARs и хроматина, что позволяет предположить, что фиксация в ядерного матрикса и статус хроматина могут быть независимыми. Существенное обогащение H3K9me3 P1 промоторной области гена TP53 клеточной линии MCF-7 может быть причиной более низких уровней экспрессии TP53, описанных ранее нашей группой

Expression analysis of transcription factors from the interaction between cacao and Moniliophthora perniciosa (Tricholomataceae)

Cacao (Theobroma cacao) is one of the most important tropical crops; however, production is threatened by numerous pathogens, including the hemibiotrophic fungus Moniliophthora perniciosa, which causes witches' broom disease. To understand the mechanisms that lead to the development of this disease in cacao, we focused our attention on cacao transcription factors (TFs), which act as master regulators of cellular processes and are important for the fine-tuning of plant defense responses. We developed a macroarray with 88 TF cDNA from previously obtained cacao-M. perniciosa interaction libraries. Seventy-two TFs were found differentially expressed between the susceptible (Catongo) and resistant (TSH1188) genotypes and/or during the disease time course - from 24 h to 30 days after infection. Most of the differentially expressed TFs belonged to the bZIP, MYB and WRKY families and presented opposite expression patterns in susceptible and resistant cacao-M. perniciosa interactions (i.e., up-regulated in Catongo and down-regulated in TSH1188). The results of the macroarray were confirmed for bZIP and WRKY TFs by real-time PCR. These differentially expressed TFs are good candidates for subsequent functional analysis as well as for plant engineering. Some of these TFs could also be localized on the cacao reference map related to witches' broom resistance, facilitating the breeding and selection of resistant cacao trees. (Résumé d'auteur

Stability conditions for fermionic Ising spin-glass models in the presence of a transverse field

The stability of spin-glass (SG) phase is analyzed in detail for a fermionic Ising SG (FISG) model in the presence of a magnetic transverse field $\Gamma$. The fermionic path integral formalism, replica method and static approach have been used to obtain the thermodynamic potential within one step replica symmetry breaking ansatz. The replica symmetry (RS) results show that the SG phase is always unstable against the replicon. Moreover, the two other eigenvalues $\lambda_{\pm}$ of the Hessian matrix (related to the diagonal elements of the replica matrix) can indicate an additional instability to the SG phase, which enhances when $\Gamma$ is increased. Therefore, this result suggests that the study of the replicon can not be enough to guarantee the RS stability in the present quantum FISG model, especially near the quantum critical point. In particular, the FISG model allows changing the occupation number of sites, so one can get a first order transition when the chemical potential exceeds a certain value. In this region, the replicon and the $\lambda_{\pm}$ indicate instability problems for the SG solution close to all range of first order boundary.Comment: 15 pages, 4 figures, accepted in Physica

Expression profile of genes potentially associated with adequate glycemic control in patients with type 2 diabetes mellitus

CAPES - COORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIORFAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULODespite increasing research in type 2 diabetes mellitus (T2D), there are few studies showing the impact of the poor glycemic control on biological processes occurring in T2D. In order to identify potential genes related to poorly/well-controlled patients2017CAPES - COORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIORFAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULOCAPES - COORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIORFAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULOsem informação2007/08362-82009/16233-92010/10882-

A prediction algorithm for drug response in patients with mesial temporal lobe epilepsy based on clinical and genetic information

FAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULOMesial temporal lobe epilepsy is the most common form of adult epilepsy in surgical series. Currently, the only characteristic used to predict poor response to clinical treatment in this syndrome is the presence of hippocampal sclerosis. Single nucleotide121FAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULOFAPESP - FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO2013/07559-

In vitro effect of seven essential oils on the reproduction of the cattle tick Rhipicephalus microplus

AbstractThe acaricidal effect of seven essential oils was examined in vitro against the cattle tick (Rhipicephalus microplus). Engorged female ticks were manually collected in farms of Southern Brazil and placed into petri dishes (n=10) in order to test the following oils: juniper (Juniperus communis), palmarosa (Cymbopogon martinii), cedar (Cedrus atlantica), lemon grass (Cymbopogon citratus), ginger (Zingiber officinale), geranium (Pelargonium graveolens) and bergamot (Citrus aurantium var bergamia) at concentrations of 1%, 5%, and 10% each. A control group was used to validate the tests containing Triton X-100 only. Treatment effectiveness was measured considering inhibition of tick oviposition (partial or total), egg’s weight, and hatchability. C. martinii, C. citratus and C. atlantica essential oils showed efficacy higher than 99% at all concentrations tested. In addition, J. communis, Z. officinale, P. graveolens, and C. aurantium var bergamia oils showed efficiency ranging from 73% to 95%, depending on the concentration tested, where higher concentrations showed greater efficacy. It was concluded that essential oils can affect tick reproduction in vitro by inhibiting oviposition and hatchability

Evidence Of Chemotaxis By Quantitative Measurement Of The Force Vectors Of Trypanossoma Cruzi In The Vicinity Of The Rhodnius Prolixus Midgut Wall Cell

In this work we used a methodology to study chemotaxis of Trypanossoma cruzi (T. Cruzi) in real time using an Optical Tweezers system. Trapped beads were used as a force transducer for measuring forces of the same order of magnitude as typical forces induced by flagellar motion. Optical Tweezers allowed real time measurements of the force vectors, strength and direction, of living parasites under chemical or other kinds of gradients. This seems to be the ideal tool to perform observations of taxis response of cells and microorganisms with high sensitivity to capture instantaneous responses to a given stimulus. We applied this methodology to investigate the T. cruzi under distinct situations: the parasite alone and in the presence of its insect-vector Rhodnius prolixus (R. prolixus). © 2009 SPIE.7400http://www.who.int/tdr/diseases/chagas/diseaseinfo.htmlAnna, B., Carole, A.P., Eukaryotic chemotaxis at a glance (2008) J. Cell Science, 121, pp. 2621-2624Laszlo, K., Chemotaxis: The proper physiological response to evaluate phylogeny of signal molecules (1999) Acta Biol Hung, 50, pp. 375-394Law, A.M.J., Aitken, M.D., Continuous-flow capillary assay for measuring bacterial chemotaxis (2005) Appl. Environ. Microbiol., 71, pp. 3137-3143Khan, S., Jain, S., Reid, G.P., Trentham, D.R., The fast tumble signal in bacterial chemotaxis (2004) Biophys. J., 86, pp. 4049-4058Neuman, K.C., Chadd, E.H., Liou, G.F., Bergman, K., Block, S.M., Characterization of photodamage to escherichia coli in optical traps (1999) Biophys. J., 77, pp. 2856-2863Bleul, C.C., Farzan, M., Choe, H., Parolin, C., Clark-Lewis, I., Sodroski, J., Springer, T.A., The lymphocyte chemoattractant SDF-1 is a ligand for LESTR/fusin and blocks HIV-1 entry (1996) Nature, 382 (6594), pp. 829-833. , DOI 10.1038/382829a0Nagasawa, T., Hirota, S., Tachibana, K., Takakura, N., Nishikawa, S., Kitamura, Y., Yoshida, N., Kishimoto, T., Defects of B-cell lymphopoiesis and bone-marrow myelopoiesis in mice lacking the CXC chemokine PBSF/SDF- 1 (1996) Nature, 382, pp. 635-638Nelson, R.D., Quie, P.G., Simmons, R.L., Spontaneous migration of human polymorphonuclear leukocytes and monocytes, chemotaxis under agarose-new and simple method for measuring chemotaxis and (1975) J. Immunol., 115, pp. 1650-1656Blair, D.F., How bacteria sense and swim (1999) Annu. Rev. Microbiol, 49, pp. 489-522Rao, C.V., Glekas, G.D., Ordal, G.W., The three adaptation systems of bacillus subtilis chemotaxis (2008) Trends Microbiol, 16, pp. 480-487Barros, V.C., Oliveira, J.S., Melo, M.N., Gontijo, N.F., Leishmania amazonensis: Chemotaxic and osmotaxic responses in promastigotes and their probable role in development in the phlebotomine gut (2006) Exp. Parasitol., 112, pp. 152-157Pfeffer, W., (1888) Unters. Botan. Inst., 2, pp. 582-661. , TubingenAdler, J., A method for measuring chemotaxis and use of the method to determine optimum conditions for chemotaxis by escherichia coli (1973) J. Gen. Microbiol., 74, pp. 77-91Alves, C.R., Albuquerque-Cunha, J.M., Mello, C.B., Nogueira, E.S.G.D.N.F., Bourguingnon, S.C., Souza, W.D., Azambuja, P., Gonzalez, M.S., Trypanosoma cruzi: Attachment to perimicrovillar membrane glycoproteins of rhodnius prolixus (2007) Experimental Parasitology, 116, pp. 44-52Fontes, A., Giorgio, S., De Castro Jr., A.B., Neto, V.M., De Pozzo, L.Y., Marques, G.P., Barbosa, L.C., Cesar, C.L., Determination of Femto Newton forces and fluid viscosity using optical tweezers - Application to Leishmania amazonensis (2005) Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 5699, pp. 419-425. , DOI 10.1117/12.586427, 59, Imaging, Manipulation, and Analysis of Biomolecules and Cells: Fundamentals and Applications II

Essential oil of Thymus vulgaris: preparation of pharmaceutical mouthwash formulation and in vitro evaluation of the bacterial plaque-inhibiting properties

O objetivo deste estudo foi avaliar in vitro o efeito do óleo essencial de Thymus vulgaris (tomilho) puro ou incorporado em uma formulação farmacêutica de uso oral (enxaguatório bucal), frente ao Streptococcus mutans (ATCC 25175), determinando-se sua concentração inibitoria minima (CIM) e o efeito na formação da placa bacteriana. A CIM obtida para o óleo essencial de tomilho foi de 100 μg/mL (1 %). Procedeu-se o desenvolvimento de enxaguatório bucal com efeito antiplaca contendo o óleo essencial comercial de tomilho. As análises da formação da placa bacteriana (ensaios microbiológicos, análise macroscópica de aderência e análises por MEV) confirmaram a eficácia destas novas formulações de enxaguatórios, sem álcool, contendo óleo essencial de T. vulgaris como agentes antiplaca bacteriana com possível emprego na odontologia preventiva. A caracterização química do óleo essencial bioativo foi realizada por CG-MS, verificando-se a presença de carvacrol, p-cimeno e α-pineno como constituintes majoritáriosThe aim of this study was to evaluate the in vitro effect of the essential oil of Thymus vulgaris (thyme) pure or incorporate in a alcohol-free pharmaceutical mouthwash formulation, against Streptococcus mutans (ATCC 25175), being determined the Minimal Inhibitory Concentration (MIC) and the effect in the bacterial plate formation. The MIC value obtained for the essential oil was 100 μg/mL (1 %). The mouthwash pharmaceutical formulation containing commercial essential oil of T. vulgaris was preparated. Microbiological and macroscopic analysis as well as analyses for MEV confirmed the effectiveness of this new alcohol-free mouthwash formulation containing essential oil of T. vulgaris as agent with plaqueinhibiting properties and possible application in the preventive dentistry. The chemical characterization of the bioactive essential oil was accomplished by CG-MS, being verified the presence of carvacrol, p-cimene and α- pinene as major constituents.Colegio de Farmacéuticos de la Provincia de Buenos Aire

Evaluation of the Environmental Toxicity Profile of Shampoos Formulated with Plant Biosurfactants

In developing new cosmetics, a series of steps must be followed until the final product is reached. In general, the process goes through the initial idea and preliminary research before reaching the development of the prototype. After the development of the prototype, several analytical tests are carried out to prove the viability of the product before production on a pilot scale. In the present work, three prototypes of innovative shampoo formulations containing plant extracts, rich in biosurfactants, of Chenopodium quinoa (quinoa), Glycine max (soy) and Malpighia emarginata (acerola) as cleaning agents were analyzed for their environmental toxicity profile. The plant extracts used aimed to reduce the use of toxic synthetic surfactants and to produce safe, renewable and biodegradable formulations, to help solve the challenges related to the damage caused to the environment due to the presence of synthetic surfactants in shampoo formulations and their toxic residues in soils and waters. The toxicity of the formulations was evaluated at a concentration of 1%, and the tests carried out were the phytotoxicity tests through the static test involving seed germination and root elongation of tomato (Solanum lycopersicum) and the Allium cepa L. root growth inhibition test. A toxicity test was also performed using the microcrustacean Artemia salina as a bioindicator. A formulation without the addition of surfactants, another containing only DCG, and a commercially available shampoo, whose acceptability is known, were used as comparative standards. The results showed that the formulations showed reduced or no toxic activity for the environmental bioindicator Artemia salina, for the seeds of S. lycopersicum and for the root growth of Allium cepa L., indicating the biocompatibility and safety of these formulations, thus presenting the potential for future commercialization, for the supply of new biotechnological products with high added value

Efecto insecticida y repelente del aceite de canela sobre moscas asociadas con el ganado

Objetivo. Debido a la mayor resistencia parásita, hay una necesidad de explorar insecticidas alternativos, incluidos los productos naturales, tales como aceites esenciales. En este sentido, el objetivo de este estudio fue evaluar, para el primer equipo, el efecto insecticida y repelente de Cinnamomum zeylanicum (formas libres y nanoemulsión) in vitro e in vivo. Materiales y métodos. Para ello, el efecto insecticida de la forma libre se ensayó a 1.0, 5.0 y 10%, mientras que la forma nanoemulsión se ensayó a 0.5, 1.0 y 5.0% frente a las moscas domésticas adultas, Musca domestica. Para la validación de la prueba, las moscas fueron rociados con el diluyente (agua y triton 10%) y con nanoemulsión en blanco (sin aceite esencial de C. zeylanicum). También, fueron realizados pruebas in vivo usando vacas naturalmente infestadas con Haemotobia irritans. Resultados. Los resultados demostraron que el aceite de canela (10%) y la nanoemulsión (5%) fueron 100% eficaz contra M. domestica después de 90 minutos de exposición. El efecto repelente se ensayó in vivo usando 5% de aceite de canela en vacas Holstein, naturalmente infestados por Haemotobia irritans. Se contaron las moscas a las 0, 1, 2, 3, 9 y 24 h después del tratamiento el aceite de canela. Se verificó disminución significativa (p<0.05) en el número de moscas vivas de vacas canela pulverizada en todo momento. Conclusiones. En base a estos resultados, C. zeylanicum mostró un efecto insecticida (in vitro) contra las moscas domésticas y efecto repelente (in vivo) contra la mosca de los cuernos