The proteome of large or small extracellular vesicles in pig seminal plasma differs, defining sources and biological functions

Seminal plasma contains many morphologically heterogeneous extracellular vesicles (sEVs). These are sequentially released by cells of the testis, epididymis and accessory sex glands, and involved in male and female reproductive processes. This study aimed to in-depth define sEV-subsets isolated by ultrafiltration and size-exclusion chromatography (SEC), decode their proteomic profiles using liquid chromatography-tandem mass spectrometry (LC-MS/MS), and to quantify identified proteins using Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH-MS). The sEV-subsets defined Large (L-EVs) or Small (S-EVs) by their protein concentration, morphology, size distribution and EV-specific protein markers and purity. LC-MS/MS identified a total of 988 proteins, 737 of them quantified by SWATH in S-EVs, L-EVs and non-EVs-enriched samples (18-20 SEC-eluted fractions). The differential expression analysis revealed 197 differentially abundant proteins between both EV-subsets, S-EVs and L-EVs, and 37 and 199 between S-EVs and L-EVs vs non-EVs-enriched samples, respectively. The gene ontology (GO) enrichment analysis of differentially abundant proteins suggested, based on the type of protein detected, that S-EVs could be mainly released through an apocrine blebbing pathway and be involved in modulating the immune environment of the female reproductive tract as well as during sperm-oocyte interaction. In contrast, L-EVs could be released by fusion of multivesicular bodies with the plasma membrane becoming involved in sperm physiological processes, such as capacitation and avoidance of oxidative stress. In conclusion, this study provides a procedure capable of isolating of subsets of EVs from pig seminal plasma with a high degree of purity and shows differences in the proteomic profile between EV-subsets,indicating different sources and biological functions for the sEVs

The Proteome of Large or Small Extracellular Vesicles in Pig Seminal Plasma Differs, Defining Sources and Biological Functions

© 2023. The authors. This document is made available under the CC-BY 4.0 license http://creativecommons.org/licenses/by /4.0/ This document is the published version of a published work that appeared in final form in Molecular & Cellular Proteomics (MCP) To access the final work, see DOI: https://doi.org/10.1016/j.mcpro.2023.100514Seminal plasma contains many morphologically heterogeneous extracellular vesicles (sEVs). These are sequentially released by cells of the testis, epididymis, and accessory sex glands and involved in male and female reproductive processes. This study aimed to define in depth sEV subsets isolated by ultrafiltration and size exclusion chromatography, decode their proteomic profiles using liquid chromatography-tandem mass spectrometry, and quantify identified proteins using sequential window acquisition of all theoretical mass spectra. The sEV subsets were defined as large (L-EVs) or small (S-EVs) by their protein concentration, morphology, size distribution, and EV-specific protein markers and purity. Liquid chromatography-tandem mass spectrometry identified a total of 1034 proteins, 737 of them quantified by SWATH in S-EVs, L-EVs, and non-EVs-enriched samples (18-20 size exclusion chromatography-eluted fractions). The differential expression analysis revealed 197 differentially abundant proteins between both EV subsets, S-EVs and L-EVs, and 37 and 199 between S-EVs and L-EVs versus non-EVs-enriched samples, respectively. The gene ontology enrichment analysis of differentially abundant proteins suggested, based on the type of protein detected, that S-EVs could be mainly released through an apocrine blebbing pathway and be involved in modulating the immune environment of the female reproductive tract as well as during sperm-oocyte interaction. In contrast, L-EVs could be released by fusion of multivesicular bodies with the plasma membrane becoming involved in sperm physiological processes, such as capacitation and avoidance of oxidative stress. In conclusion, this study provides a procedure capable of isolating subsets of EVs from pig seminal plasma with a high degree of purity and shows differences in the proteomic profile between EV subsets, indicating different sources and biological functions for the sEVs

Study of stability of relativistic ideal Bose-Einstein condensates

A relativistic complex scalar boson field at finite temperature $T$ is examined below its critical Bose-Einstein condensation temperature. It is shown that at the same $T$ the state with antibosons has higher entropy, lower Helmholtz free energy and higher pressure than the state without antibosons, but the same Gibbs free energy as it should. This implies that the configuration without antibosons is metastable. Results are generalized for arbitrary $d$ spatial dimensions.Comment: Accepted for publication in Phys.Lett.

Resonant Raman scattering off neutral quantum dots

Resonant inelastic (Raman) light scattering off neutral GaAs quantum dots which contain a mean number, N=42, of electron-hole pairs is computed. We find Raman amplitudes corresponding to strongly collective final states (charge-density excitations) of similar magnitude as the amplitudes related to weakly collective or single-particle excitations. As a function of the incident laser frequency or the magnetic field, they are rapidly varying amplitudes. It is argued that strong Raman peaks should come out in the spin-density channels, not related to valence-band mixing effects in the intermediate states.Comment: Accepted in Physical Review

Rossby Wave Instability and three-dimensional vortices in accretion disks

Context. The formation of vortices in accretion disks is of high interest in various astrophysical contexts, in particular for planet formation or in the disks of compact objects. But despite numerous attempts it has thus far not been possible to produce strong vortices in fully three-dimensional simulations of disks. Aims. The aim of this paper is to present the first 3D simulation of a strong vortex, established across the vertically stratified structure of a disk by the Rossby Wave Instability. Methods. Using the Versatile Advection Code (VAC), we set up a fully 3D cylindrical stratified disk potentially prone to the Rossby Wave Instability. Results. The simulation confirms the basic expectations obtained from previous 2D analytic and numerical works. The simulation exhibits a strong vortex that grows rapidly and saturates at a finite amplitude. On the other hand the third dimension shows unexpected additional behaviours that could be of strong importance in the astrophysical roles that such vortices can play.Comment: Accepted by Astronomy and Astrophysic

Standardizing effect size from linear regression models with log-transformed variables for meta-analysis

Background: Meta-analysis is very useful to summarize the effect of a treatment or a risk factor for a given disease. Often studies report results based on log-transformed variables in order to achieve the principal assumptions of a linear regression model. If this is the case for some, but not all studies, the effects need to be homogenized. Methods: We derived a set of formulae to transform absolute changes into relative ones, and vice versa, to allow including all results in a meta-analysis. We applied our procedure to all possible combinations of log-transformed independent or dependent variables. We also evaluated it in a simulation based on two variables either normally or asymmetrically distributed. Results: In all the scenarios, and based on different change criteria, the effect size estimated by the derived set of formulae was equivalent to the real effect size. To avoid biased estimates of the effect, this procedure should be used with caution in the case of independent variables with asymmetric distributions that significantly differ from the normal distribution. We illustrate an application of this procedure by an application to a meta-analysis on the potential effects on neurodevelopment in children exposed to arsenic and manganese. Conclusions: The procedure proposed has been shown to be valid and capable of expressing the effect size of a linear regression model based on different change criteria in the variables. Homogenizing the results from different studies beforehand allows them to be combined in a meta-analysis, independently of whether the transformations had been performed on the dependent and/or independent variables

Supersymmetric BCS

We implement relativistic BCS superconductivity in N=1 supersymmetric field theories with a U(1)_R symmetry. The simplest model contains two chiral superfields with a Kahler potential modified by quartic terms. We study the phase diagram of the gap as a function of the temperature and the specific heat. The superconducting phase transition turns out to be first order, due to the scalar contribution to the one-loop potential. By virtue of supersymmetry, the critical curves depend logarithmically with the UV cutoff, rather than quadratically as in standard BCS theory. We comment on the difficulties in having fermion condensates when the chemical potential is instead coupled to a baryonic U(1)_B current. We also discuss supersymmetric models of BCS with canonical Kahler potential constructed by "integrating-in" chiral superfields.Comment: 26 pages, 5 figure

Systematics of collective correlation energies from self-consistent mean-field calculations

The collective ground-state correlations stemming from low-lying quadrupole excitations are computed microscopically. To that end, the self-consistent mean-field model is employed on the basis of the Skyrme-Hartre-Fock (SHF) functional augmented by BCS pairing. The microscopic-macroscopic mapping is achieved by quadrupole-constrained mean-field calculations which are processed further in the generator-coordinate method (GCM) at the level of the Gaussian overlap approximation (GOA). We study the correlation effects on energy, charge radii, and surface thickness for a great variety of semi-magic nuclei. A key issue is to work out the influence of variations of the SHF functional. We find that collective ground-state correlations (GSC) are robust under change of nuclear bulk properties (e.g., effective mass, symmetry energy) or of spin-orbit coupling. Some dependence on the pairing strength is observed. This, however, does not change the general conclusion that collective GSC obey a general pattern and that their magnitudes are rather independent of the actual SHF parameters.Comment: 13 pages, 13 figure

Assessment of the EarlyCDT-Lung test as an early biomarker of lung cancer in ever-smokers - A retrospective nested case-control study in two prospective cohorts

The EarlyCDT-Lung test is a blood-based autoantibody assay intended to identify high-risk individuals for low-dose computed tomography lung cancer screening. However, there is a paucity of evidence on the performance of the EarlyCDT-Lung test in ever-smokers. We conducted a nested case-control study within two prospective cohorts to evaluate the risk-discriminatory performance of the EarlyCDT-Lung test using pre-diagnostic blood samples from 154 future lung cancer cases and 154 matched controls. Cases were selected from those who had ever smoked and had a pre-diagnostic blood samples less than 3 years prior to diagnosis. Conditional logistic regression was used to estimate the association between EarlyCDT-Lung test results and lung cancer risk. Sensitivity and specificity of the EarlyCDT-Lung test were calculated in all subjects and subgroups based on age, smoking history, lung cancer stage, sample collection time before diagnosis and year of sample collection. The overall lung cancer odds ratios were 0.89 (95% CI, 0.34-2.30) for a moderate risk EarlyCDT-Lung test result and 1.09 (95% CI, 0.48-2.47) for a high-risk test result compared to no significant test result. The overall sensitivity was 8.4% (95% CI, 4.6-14) and overall specificity was 92% (95% CI, 87-96) when considering a high-risk result as positive. Stratified analysis indicated higher sensitivity (17%, 95% CI, 7.2-32.1) in subjects with blood drawn up to 1 year prior to diagnosis. In conclusion, our study does not support a role of the EarlyCDT-Lung test in identifying the high-risk subjects in ever-smokers for lung cancer screening in the EPIC and NSHDS cohorts