Properties of the mechanosensitive channel MscS pore revealed by tryptophan scanning mutagenesis

Funding This work was supported by a Wellcome Trust Programme grant [092552/A/10/Z awarded to I.R.B., S.M., J. H. Naismith (University of St Andrews, St Andrews, U.K.), and S. J. Conway (University of Oxford, Oxford, U.K.)] (T.R. and M.D.E.), by a BBSRC grant (A.R.) [BB/H017917/1 awarded to I.R.B., J. H. Naismith, and O. Schiemann (University of St Andrews)], by a Leverhulme Emeritus Fellowship (EM-2012-060\2), and by a CEMI grant to I.R.B. from the California Institute of Technology. The research leading to these results has received funding from the European Union Seventh Framework Programme (FP7/2007-2013 FP7/2007-2011) under Grant PITN-GA-2011-289384 (FP7-PEOPLE-2011-ITN NICHE) (H.G.) (awarded to S.M.).Peer reviewedPublisher PD

Adaptive, cautious, predictive control with Gaussian process priors

Nonparametric Gaussian Process models, a Bayesian statistics approach, are used to implement a nonlinear adaptive control law. Predictions, including propagation of the state uncertainty are made over a k-step horizon. The expected value of a quadratic cost function is minimised, over this prediction horizon, without ignoring the variance of the model predictions. The general method and its main features are illustrated on a simulation example

Discrete Nonlinear Schrodinger Equations with arbitrarily high order nonlinearities

A class of discrete nonlinear Schrodinger equations with arbitrarily high order nonlinearities is introduced. These equations are derived from the same Hamiltonian using different Poisson brackets and include as particular cases the saturable discrete nonlinear Schrodinger equation and the Ablowitz-Ladik equation. As a common property, these equations possess three kinds of exact analytical stationary solutions for which the Peierls-Nabarro barrier is zero. Several properties of these solutions, including stability, discrete breathers and moving solutions, are investigated

Bent-Double Radio Sources as Probes of Intergalactic Gas

As the most common environment in the universe, groups of galaxies are likely to contain a significant fraction of the missing baryons in the form of intergalactic gas. The density of this gas is an important factor in whether ram pressure stripping and strangulation affect the evolution of galaxies in these systems. We present a method for measuring the density of intergalactic gas using bent-double radio sources that is independent of temperature, making it complementary to current absorption line measurements. We use this method to probe intergalactic gas in two different environments: inside a small group of galaxies as well as outside of a larger group at a 2 Mpc radius and measure total gas densities of $4 \pm 1_{-2}^{+6} \times 10^{-3}$ and $9 \pm 3_{-5}^{+10} \times 10^{-4}$ per cubic centimeter (random and systematic errors) respectively. We use X-ray data to place an upper limit of $2 \times 10^6$ K on the temperature of the intragroup gas in the small group.Comment: 6 pages, 1 figure, accepted for publication in Ap

Three-Dimensional Elastic Compatibility: Twinning in Martensites

We show how the St.Venant compatibility relations for strain in three dimensions lead to twinning for the cubic to tetragonal transition in martensitic materials within a Ginzburg-Landau model in terms of the six components of the symmetric strain tensor. The compatibility constraints generate an anisotropic long-range interaction in the order parameter (deviatoric strain) components. In contrast to two dimensions, the free energy is characterized by a "landscape" of competing metastable states. We find a variety of textures, which result from the elastic frustration due to the effects of compatibility. Our results are also applicable to structural phase transitions in improper ferroelastics such as ferroelectrics and magnetoelastics, where strain acts as a secondary order parameter

Abrupt changes in alpha decay systematics as a manifestation of collective nuclear modes

An abrupt change in $\alpha$ decay systematics around the N=126 neutron shell closure is discussed. It is explained as a sudden hindrance of the clustering of the nucleons that eventually form the $\alpha$ particle. This is because the clustering induced by the pairing mode acting upon the four nucleons is inhibited if the configuration space does not allow a proper manifestation of the pairing collectivity.Comment: 6 pages, 3 figures, submitted to Phys. Rev. C, a few new references adde

Performance, lean meat proportion and behaviour of fattening pigs given a liquid diet at different animal/feeding-place ratios

Sensor feeding is a liquid feeding system for fattening pigs that is operated with a restricted animal/feeding-place ratio (AFR). The aim of the present study was to quantify the effect of three different AFRs (4:1, 7:1 and 13:1, calculated with a feeding space of 33 cm per animal) on the performance and behaviour of fattening pigs (mean initial weight 26·3 (s.d. 3·3) kg, live weight at slaughter 102 (s.d. 5) kg). The pigs were housed in groups of 40 and each AFR was tested with seven groups (21 groups in total). The daily weight gain of the individual pigs was calculated from the beginning of the experiments until slaughter. Additionally, the lean meat percentage was recorded (AutoFOM). Feeding behaviour was observed by means of 24-h video recording at the ages of 14 and 17 weeks with scan sampling every 5 min. The daily weight gain decreased with increasing AFR ( P<0·01) and females had lower weight gains than barrows ( P<0·001). The lean meat proportion was influenced by the AFR ( P<0·01) and sex of the pigs ( P<0·001). Proportions were highest with the AFR 13:1 and in females. The average number of pigs feeding simultaneously was highest for the AFR of 4:1 ( P<0·01). Moreover, the ingestion rate per day (kg/min) increased with increasing AFR ( P<0·05). The average number of pigs waiting behind other pigs feeding at the trough was highest with the AFR 13:1 ( P<0·001).In conclusion, growth performance and pig behaviour were negatively affected by an AFR of 13:1, which cannot be recommended for use with this feeding system. With an AFR of 4:1 lean meat values were lo

Comparing league formats with respect to match importance in Belgian football

Recently, most clubs in the highest Belgian football division have become convinced that the format of their league should be changed. Moreover, the TV station that broadcasts the league is pleading for a more attractive competition. However, the clubs have not been able to agree on a new league format, mainly because they have conflicting interests. In this paper, we compare the current league format, and three other formats that have been considered by the Royal Belgian Football Association. We simulate the course of each of these league formats, based on historical match results. We assume that the attractiveness of a format is determined by the importance of its games; our importance measure for a game is based on the number of teams for which this game can be decisive to reach a given goal. Furthermore, we provide an overview of how each league format aligns with the expectations and interests of each type of club

A Functional Naturalism

I provide two arguments against value-free naturalism. Both are based on considerations concerning biological teleology. Value-free naturalism is the thesis that both (1) everything is, at least in principle, under the purview of the sciences and (2) all scientific facts are purely non-evaluative. First, I advance a counterexample to any analysis on which natural selection is necessary to biological teleology. This should concern the value-free naturalist, since most value-free analyses of biological teleology appeal to natural selection. My counterexample is unique in that it is likely to actually occur. It concerns the creation of synthetic life. Recent developments in synthetic biology suggest scientists will eventually be able to develop synthetic life. Such life, however, would not have any of its traits naturally selected for. Second, I develop a simple argument that biological teleology is a scientific but value-laden notion. Consequently, value-free naturalism is false. I end with some concluding remarks on the implications for naturalism, the thesis that (1). Naturalism may be salvaged only if we reject (2). (2) is a dogma that unnecessarily constrains our conception of the sciences. Only a naturalism that recognizes value-laden notions as scientifically respectable can be true. Such a naturalism is a functional naturalism

A two-species continuum model for aeolian sand transport

Starting from the physics on the grain scale, we develop a simple continuum description of aeolian sand transport. Beyond popular mean-field models, but without sacrificing their computational efficiency, it accounts for both dominant grain populations, hopping (or "saltating") and creeping (or "reptating") grains. The predicted stationary sand transport rate is in excellent agreement with wind tunnel experiments simulating wind conditions ranging from the onset of saltation to storms. Our closed set of equations thus provides an analytically tractable, numerically precise, and computationally efficient starting point for applications addressing a wealth of phenomena from dune formation to dust emission.Comment: 23 pages, 9 figure