Barium isotopes reveal role of ocean circulation on barium cycling in the Atlantic

© The Author(s), 2017. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 204 (2017): 286-299, doi: 10.1016/j.gca.2017.01.043.We diagnose the relative influences of local-scale biogeochemical cycling and regional-scale ocean circulation on Atlantic barium cycling by analyzing four new depth profiles of dissolved Ba concentrations and isotope compositions from the South and tropical North Atlantic. These new profiles exhibit systematic vertical, zonal, and meridional variations that reflect the influence of both local-scale barite cycling and large-scale ocean circulation. Previously reported epipelagic decoupling of Ba and Si in the tropics is also found to be associated with significant Ba isotope heterogeneity. We contend that this decoupling originates from the depth segregation of opal & barite formation but is exacerbated by weak vertical mixing, as in the tropics. Zonal influence from isotopically-‘heavy’ water masses in the western North Atlantic evidence the advective inflow of Ba-depleted Upper Labrador Sea Water, which is not seen in the eastern basin or the South Atlantic. Meridional variations in Atlantic Ba isotope systematics below 2,000 m appear entirely controlled by conservative mixing. Using an inverse isotopic mixing model, we calculate the Ba isotope composition of the Ba-poor northern end member as +0.45 ‰ and the Ba-rich southern end member +0.26 ‰, relative to NIST SRM 3104a. The near-conservative behaviour of Ba in the deep ocean indicates that Ba isotopes may serve as an independent tracer of the provenance of advected water masses in the Atlantic Ocean. The clearly resolved Ba-isotope signatures of northern- and southern-sourced waters may also prove useful in paleoceanographic studies, should appropriate sedimentary archives be identified. Overall, our results offer new insights into the controls on Ba cycling in seawater and thus the mechanisms that underpin the utility of Ba-based proxies in paleoceanography.D357/GA10E was funded by the UK-GEOTRACES National Environment Research Council Consortium Grant (NE/H006095/1) and JC094 by the European Research Council. KH thanks The Royal Society (University Research Fellowship UF120084) and FP7-PEOPLE-2012-CIG Proposal No 320070 for funding; TJH thanks The Andrew W. Mellon Foundation Endowed Fund for Innovative Research, NSF (OCE-1443577), and the Agouron Institute Geobiology Postdoctoral Fellowship Program for supporting isotope research at NIRVANA

Spatiotemporal variability of barium in Arctic sea-ice and seawater

Freshwater export from the Arctic is critical in determining the density of water at sites of North Atlantic deep water formation, which in turn influences the global flux of oceanic heat and nutrients. We need geochemical tracers and high-resolution observations to refine our freshwater budgets and constrain models for future change. The use of seawater barium concentrations in the Arctic Ocean as a freshwater tracer relies on the conservative behaviour of barium in seawater; whilst this has been shown to be an unreliable assumption in Arctic summers, there are a lack of studies observing seasonal progressions. Here, we present barium concentrations from seawater and sea-ice collected during the Norwegian Young Sea ICE expedition from boreal winter into summer. We use other tracers (salinity, oxygen isotopes and alkalinity) to reconstruct freshwater inputs and calculate a barium “deficit” that can be attributed to non-conservative processes. We locate a deficit in winter when biological production is low, which we attribute to uptake by barite formation associated with old organic matter or by internal sea-ice processes. We also find a significant barium deficit during the early spring bloom, consistent with uptake into organic-matter associated microenvironments. However, in summer there no strong barium deficit near the surface, despite high biological production and organic carbon standing stocks, perhaps reflecting phytoplankton assemblage changes, and/or rapid internal cycling. Our findings challenge the assumptions surrounding the use of barium as an Arctic freshwater tracer, and highlight the need to improve our understanding of barium in sea-ice environments

GWAS meta-analysis of intrahepatic cholestasis of pregnancy implicates multiple hepatic genes and regulatory elements

Intrahepatic cholestasis of pregnancy (ICP) is a pregnancy-specific liver disorder affecting 0.5–2% of pregnancies. The majority of cases present in the third trimester with pruritus, elevated serum bile acids and abnormal serum liver tests. ICP is associated with an increased risk of adverse outcomes, including spontaneous preterm birth and stillbirth. Whilst rare mutations affecting hepatobiliary transporters contribute to the aetiology of ICP, the role of common genetic variation in ICP has not been systematically characterised to date. Here, we perform genome-wide association studies (GWAS) and meta-analyses for ICP across three studies including 1138 cases and 153,642 controls. Eleven loci achieve genome-wide significance and have been further investigated and fine-mapped using functional genomics approaches. Our results pinpoint common sequence variation in liver-enriched genes and liver-specific cis-regulatory elements as contributing mechanisms to ICP susceptibility

Merveilles & contes

The globally-observed relationship between oceanic barium and the macronutrient silicic acid results from the shared influence of large-scale ocean circulation and mixing on the two elements, and the inherent link between barium and organic matter formation and dissolution. A detailed examination of deviations from barium-silicon correlations can reveal variations in non-conservative processes within the marine barium cycle. Here, we present a high-resolution dataset of dissolved barium and macronutrients from the Drake Passage and the Scotia and Weddell Seas. Our new results highlight the influence of Southern Ocean frontal zones on barium cycling and the deviations of barium and macronutrient distributions as a result of spatial variations in phytoplankton assemblages and in barite formation processes. These new data also reinforce findings that water mass mixing and ocean circulation, in particular the location of oxygen minima, play a key role in barium distribution. Our findings have implications for the use of sedimentary barium as a proxy for export production, which may be complicated by physical water circulation changes or shifts in plankton community structure

A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.

BACKGROUND: Mitochondrial DNA copy number (mtDNA CN) exhibits interindividual and intercellular variation, but few genome-wide association studies (GWAS) of directly assayed mtDNA CN exist. We undertook a GWAS of qPCR-assayed mtDNA CN in the Avon Longitudinal Study of Parents and Children (ALSPAC) and the UK Blood Service (UKBS) cohort. After validating and harmonising data, 5461 ALSPAC mothers (16-43 years at mtDNA CN assay) and 1338 UKBS females (17-69 years) were included in a meta-analysis. Sensitivity analyses restricted to females with white cell-extracted DNA and adjusted for estimated or assayed cell proportions. Associations were also explored in ALSPAC children and UKBS males. RESULTS: A neutrophil-associated locus approached genome-wide significance (rs709591 [MED24], β (change in SD units of mtDNA CN per allele) [SE] - 0.084 [0.016], p = 1.54e-07) in the main meta-analysis of adult females. This association was concordant in magnitude and direction in UKBS males and ALSPAC neonates. SNPs in and around ABHD8 were associated with mtDNA CN in ALSPAC neonates (rs10424198, β [SE] 0.262 [0.034], p = 1.40e-14), but not other study groups. In a meta-analysis of unrelated individuals (N = 11,253), we replicated a published association in TFAM (β [SE] 0.046 [0.017], p = 0.006), with an effect size much smaller than that observed in the replication analysis of a previous in silico GWAS. CONCLUSIONS: In a hypothesis-generating GWAS, we confirm an association between TFAM and mtDNA CN and present putative loci requiring replication in much larger samples. We discuss the limitations of our work, in terms of measurement error and cellular heterogeneity, and highlight the need for larger studies to better understand nuclear genomic control of mtDNA copy number

A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts

Abstract Background Mitochondrial DNA copy number (mtDNA CN) exhibits interindividual and intercellular variation, but few genome-wide association studies (GWAS) of directly assayed mtDNA CN exist. We undertook a GWAS of qPCR-assayed mtDNA CN in the Avon Longitudinal Study of Parents and Children (ALSPAC) and the UK Blood Service (UKBS) cohort. After validating and harmonising data, 5461 ALSPAC mothers (16–43 years at mtDNA CN assay) and 1338 UKBS females (17–69 years) were included in a meta-analysis. Sensitivity analyses restricted to females with white cell-extracted DNA and adjusted for estimated or assayed cell proportions. Associations were also explored in ALSPAC children and UKBS males. Results A neutrophil-associated locus approached genome-wide significance (rs709591 [MED24], β (change in SD units of mtDNA CN per allele) [SE] − 0.084 [0.016], p = 1.54e−07) in the main meta-analysis of adult females. This association was concordant in magnitude and direction in UKBS males and ALSPAC neonates. SNPs in and around ABHD8 were associated with mtDNA CN in ALSPAC neonates (rs10424198, β [SE] 0.262 [0.034], p = 1.40e−14), but not other study groups. In a meta-analysis of unrelated individuals (N = 11,253), we replicated a published association in TFAM (β [SE] 0.046 [0.017], p = 0.006), with an effect size much smaller than that observed in the replication analysis of a previous in silico GWAS. Conclusions In a hypothesis-generating GWAS, we confirm an association between TFAM and mtDNA CN and present putative loci requiring replication in much larger samples. We discuss the limitations of our work, in terms of measurement error and cellular heterogeneity, and highlight the need for larger studies to better understand nuclear genomic control of mtDNA copy number