C Compiler Targeting the Java Virtual Machine

One of the major drawbacks in the field of computer software development has been the inability for applications to compile once and execute across many different platforms. With the emergence of the Internet and the networking of many different platforms, the Java programming language and the Java Platform was created by Sun Microsystems to address this Write Once, Run Anywhere problem. What sets a compiled Java program apart from programs compiled from other high level languages is the ability of a Java Virtual Machine to execute the compiled Java program on any platform, as long as the Java Virtual Machine is running on top of that platform. Java\u27s cross platform capabilities can be extended to other high level languages such as C. The main objective of our project is to implement a compiler targeting the Java Platform for a subset of the C language. This will allow code written in that subset of C to be compiled into Java Virtual Machine instructions, also known as JVM bytecode, which can then be executed on a Java Virtual Machine running on any platform. The reader is assumed to be intimately familiar with compiler construction, the use of the flex scanner generator, the use of the GNU bison parser generator, and the structure and implementation of the Java Virtual Machine

Large-scale Nanostructure Simulations from X-ray Scattering Data On Graphics Processor Clusters

X-ray scattering is a valuable tool for measuring the structural properties of materialsused in the design and fabrication of energy-relevant nanodevices (e.g., photovoltaic, energy storage, battery, fuel, and carbon capture andsequestration devices) that are key to the reduction of carbon emissions. Although today's ultra-fast X-ray scattering detectors can provide tremendousinformation on the structural properties of materials, a primary challenge remains in the analyses of the resulting data. We are developing novelhigh-performance computing algorithms, codes, and software tools for the analyses of X-ray scattering data. In this paper we describe two such HPCalgorithm advances. Firstly, we have implemented a flexible and highly efficient Grazing Incidence Small Angle Scattering (GISAXS) simulation code based on theDistorted Wave Born Approximation (DWBA) theory with C++/CUDA/MPI on a cluster of GPUs. Our code can compute the scattered light intensity from any givensample in all directions of space; thus allowing full construction of the GISAXS pattern. Preliminary tests on a single GPU show speedups over 125x compared tothe sequential code, and almost linear speedup when executing across a GPU cluster with 42 nodes, resulting in an additional 40x speedup compared to usingone GPU node. Secondly, for the structural fitting problems in inverse modeling, we have implemented a Reverse Monte Carlo simulation algorithm with C++/CUDAusing one GPU. Since there are large numbers of parameters for fitting in the in X-ray scattering simulation model, the earlier single CPU code required weeks ofruntime. Deploying the AccelerEyes Jacket/Matlab wrapper to use GPU gave around 100x speedup over the pure CPU code. Our further C++/CUDA optimization deliveredan additional 9x speedup

Large-scale Nanostructure Simulations from X-ray Scattering Data On Graphics Processor Clusters

X-ray scattering is a valuable tool for measuring the structural properties of materialsused in the design and fabrication of energy-relevant nanodevices (e.g., photovoltaic, energy storage, battery, fuel, and carbon capture andsequestration devices) that are key to the reduction of carbon emissions. Although today's ultra-fast X-ray scattering detectors can provide tremendousinformation on the structural properties of materials, a primary challenge remains in the analyses of the resulting data. We are developing novelhigh-performance computing algorithms, codes, and software tools for the analyses of X-ray scattering data. In this paper we describe two such HPCalgorithm advances. Firstly, we have implemented a flexible and highly efficient Grazing Incidence Small Angle Scattering (GISAXS) simulation code based on theDistorted Wave Born Approximation (DWBA) theory with C++/CUDA/MPI on a cluster of GPUs. Our code can compute the scattered light intensity from any givensample in all directions of space; thus allowing full construction of the GISAXS pattern. Preliminary tests on a single GPU show speedups over 125x compared tothe sequential code, and almost linear speedup when executing across a GPU cluster with 42 nodes, resulting in an additional 40x speedup compared to usingone GPU node. Secondly, for the structural fitting problems in inverse modeling, we have implemented a Reverse Monte Carlo simulation algorithm with C++/CUDAusing one GPU. Since there are large numbers of parameters for fitting in the in X-ray scattering simulation model, the earlier single CPU code required weeks ofruntime. Deploying the AccelerEyes Jacket/Matlab wrapper to use GPU gave around 100x speedup over the pure CPU code. Our further C++/CUDA optimization deliveredan additional 9x speedup

Self-reported sleep difficulty during the menopausal transition: Results from a prospective cohort study

Objective: The aim of this study was to examine the relationship between menopausal transition status and self-reported sleep difficulty