Intercontinental comparison of habitat levels of invasion between temperate North America and Europe

Several studies have demonstrated that floras of the New World contain larger proportions of alien species than those of the Old World; however, the differences in fine-scale invasion patterns are poorly known. We compared the levels of invasion in analogous habitats of two environmentally similar regions in temperate North America and Europe (the Carolinas and the Czech Republic), using comprehensive vegetation-plot databases. Native and alien vascular plant species were identified within 4165 vegetation plots assigned to 12 habitats occurring in both areas. The level of invasion was calculated for each habitat (1) as the proportion of aliens recorded cumulatively across multiple plots (habitat scale) and (2) as the mean proportion of aliens per plot (plot scale), both separately for all alien species and for the subgroup of aliens originating in one region and invading the other. The proportions of species native on one continent and invading the other were also calculated for each habitat to compare the alien species exchange between continents. Habitat levels of invasion showed remarkably similar patterns on the two continents. There were significant positive relationships for the levels of invasion, both for all alien species (habitat-scale R2 = 0.907; plot-scale R2 = 0.676) and for those that originated on the opposite continent (habitat-scale R2 = 0.624; plot-scale R2 = 0.708). In both regions, the most and the least invaded habitats were the same, but on average, North American habitats showed higher habitat-scale levels of invasion than their European counterparts. At the same time, a larger proportion of alien species was provided by European habitats for invasion to North America than vice versa. The consistent intercontinental pattern of habitat levels of invasion suggests that these levels are driven by similar mechanisms in distant regions. Habitat conditions are likely to have stronger effect on the level of invasion than the identity of alien species, as shown by similar levels of invasion in analogous habitats despite different geographical origins of alien species. The higher flux of alien species from Europe to North America is consistent with a generally higher level of invasion of North American habitats

CONNECTING FINE- AND BROAD-SCALE SPECIES–AREA RELATIONSHIPS OF SOUTHEASTERN U.S. FLORA

Although the rate that species accumulate with area has long been regarded as an important component of fine-scale community structure and several studies have examined this rate in meta-analyses, few if any studies have systematically examined fine-scale species-area relationships using a consistent survey protocol over a large region. We examined fine-scale species-area relationships using the extensive database of the Carolina Vegetation Survey (North Carolina, South Carolina, Georgia, and Tennessee, USA), including 1472 plots wherein vascular plant richness was recorded for each of six subplot sizes regularly spaced on a log10 scale, from 0.01 to 1000 m2. Contrary to prevailing theory, our data closely and consistently fit an Arrhenius (power law) species-area model, echoing broader-scale patterns. Species accumulation rate (Z) values fell within a narrow range (95% between 0.2 and 0.5) despite a 30-fold range in 1000-m2 richness. When we added regional- and global-scale richness estimates to our results, a Preston-type triphasic curve emerged. We suggest that (1) fine-scale species-area relationships are remarkably consistent and (2) full-scale species-area curves reveal scale dependencies in diversity data that are not accounted for by current species-area theory

The Plant Diversity Sampling Design for The National Ecological Observatory Network

The National Ecological Observatory Network (NEON) is designed to facilitate an understanding of the impact of environmental change on ecological systems. Observations of plant diversity—responsive to changes in climate, disturbance, and land use, and ecologically linked to soil, biogeochemistry, and organisms—result in NEON data products that cross a range of organizational levels. Collections include samples of plant tissue to enable investigations of genetics, plot-based observations of incidence and cover of native and non-native species, observations of plant functional traits, archived vouchers of plants, and remote sensing airborne observations. Spatially integrating many ecological observations allows a description of the relationship of plant diversity to climate, land use, organisms, and substrates. Repeating the observations over decades and across the United States will iteratively improve our understanding of those relationships and allow for the testing of system-level hypotheses as well as the development of predictions of future conditions

Nonabelian Phenomena on D-branes

A remarkable feature of D-branes is the appearance of a nonabelian gauge theory in the description of several (nearly) coincident branes. This nonabelian structure plays an important role in realizing various geometric effects with D-branes. In particular, the branes' transverse displacements are described by matrix-valued scalar fields and so noncommutative geometry naturally appears in this framework. I review the action governing this nonabelian theory, as well as various related physical phenomena such as the dielectric effect, giant gravitons and fuzzy funnels.Comment: Lecture at Leuven workshop on ``The quantum structure of spacetime and the geometrical nature of fundamental interactions'' (September 13-19, 2002); ref.'s adde

Geons with spin and charge

We construct new geon-type black holes in D>3 dimensions for Einstein's theory coupled to gauge fields. A static nondegenerate vacuum black hole has a geon quotient provided the spatial section admits a suitable discrete isometry, and an antisymmetric tensor field of rank 2 or D-2 with a pure F^2 action can be included by an appropriate (and in most cases nontrivial) choice of the field strength bundle. We find rotating geons as quotients of the Myers-Perry(-AdS) solution when D is odd and not equal to 7. For other D we show that such rotating geons, if they exist at all, cannot be continuously deformed to zero angular momentum. With a negative cosmological constant, we construct geons with angular momenta on a torus at the infinity. As an example of a nonabelian gauge field, we show that the D=4 spherically symmetric SU(2) black hole admits a geon version with a trivial gauge bundle. Various generalisations, including both black-brane geons and Yang-Mills theories with Chern-Simons terms, are briefly discussed.Comment: 26 pages, 1 figure. LaTeX with amssymb, amsmath. (v2: References and a figure added.

Kinesin expands and stabilizes the GDP-microtubule lattice

Kinesin-1 is a nanoscale molecular motor that walks towards the fast-growing (plus) ends of microtubules, hauling molecular cargo to specific reaction sites in cells. Kinesin-driven transport is central to the self-organization of eukaryotic cells and shows great promise as a tool for nano-engineering1. Recent work hints that kinesin may also play a role in modulating the stability of its microtubule track, both in vitro2,3 and in vivo4, but the results are conflicting5,6,7 and the mechanisms are unclear. Here, we report a new dimension to the kinesin–microtubule interaction, whereby strong-binding state (adenosine triphosphate (ATP)-bound and apo) kinesin-1 motor domains inhibit the shrinkage of guanosine diphosphate (GDP) microtubules by up to two orders of magnitude and expand their lattice spacing by ~1.6%. Our data reveal an unexpected mechanism by which the mechanochemical cycles of kinesin and tubulin interlock, and so allow motile kinesins to influence the structure, stability and mechanics of their microtubule track

Holographic c-theorems in arbitrary dimensions

We re-examine holographic versions of the c-theorem and entanglement entropy in the context of higher curvature gravity and the AdS/CFT correspondence. We select the gravity theories by tuning the gravitational couplings to eliminate non-unitary operators in the boundary theory and demonstrate that all of these theories obey a holographic c-theorem. In cases where the dual CFT is even-dimensional, we show that the quantity that flows is the central charge associated with the A-type trace anomaly. Here, unlike in conventional holographic constructions with Einstein gravity, we are able to distinguish this quantity from other central charges or the leading coefficient in the entropy density of a thermal bath. In general, we are also able to identify this quantity with the coefficient of a universal contribution to the entanglement entropy in a particular construction. Our results suggest that these coefficients appearing in entanglement entropy play the role of central charges in odd-dimensional CFT's. We conjecture a new c-theorem on the space of odd-dimensional field theories, which extends Cardy's proposal for even dimensions. Beyond holography, we were able to show that for any even-dimensional CFT, the universal coefficient appearing the entanglement entropy which we calculate is precisely the A-type central charge.Comment: 62 pages, 4 figures, few typo's correcte

Lysyl-tRNA synthetase as a drug target in malaria and cryptosporidiosis

Malaria and cryptosporidiosis, caused by apicomplexan parasites, remain major drivers of global child mortality. New drugs for the treatment of malaria and cryptosporidiosis, in particular, are of high priority; however, there are few chemically validated targets. The natural product cladosporin is active against blood- and liver-stage; Plasmodium falciparum; and; Cryptosporidium parvum; in cell-culture studies. Target deconvolution in; P. falciparum; has shown that cladosporin inhibits lysyl-tRNA synthetase (; Pf; KRS1). Here, we report the identification of a series of selective inhibitors of apicomplexan KRSs. Following a biochemical screen, a small-molecule hit was identified and then optimized by using a structure-based approach, supported by structures of both; Pf; KRS1 and; C. parvum; KRS (; Cp; KRS). In vivo proof of concept was established in an SCID mouse model of malaria, after oral administration (ED; 90; = 1.5 mg/kg, once a day for 4 d). Furthermore, we successfully identified an opportunity for pathogen hopping based on the structural homology between; Pf; KRS1 and; Cp; KRS. This series of compounds inhibit; Cp; KRS and; C. parvum; and; Cryptosporidium hominis; in culture, and our lead compound shows oral efficacy in two cryptosporidiosis mouse models. X-ray crystallography and molecular dynamics simulations have provided a model to rationalize the selectivity of our compounds for; Pf; KRS1 and; Cp; KRS vs. (human); Hs; KRS. Our work validates apicomplexan KRSs as promising targets for the development of drugs for malaria and cryptosporidiosis

Imaging biomarker roadmap for cancer studies.

Imaging biomarkers (IBs) are integral to the routine management of patients with cancer. IBs used daily in oncology include clinical TNM stage, objective response and left ventricular ejection fraction. Other CT, MRI, PET and ultrasonography biomarkers are used extensively in cancer research and drug development. New IBs need to be established either as useful tools for testing research hypotheses in clinical trials and research studies, or as clinical decision-making tools for use in healthcare, by crossing 'translational gaps' through validation and qualification. Important differences exist between IBs and biospecimen-derived biomarkers and, therefore, the development of IBs requires a tailored 'roadmap'. Recognizing this need, Cancer Research UK (CRUK) and the European Organisation for Research and Treatment of Cancer (EORTC) assembled experts to review, debate and summarize the challenges of IB validation and qualification. This consensus group has produced 14 key recommendations for accelerating the clinical translation of IBs, which highlight the role of parallel (rather than sequential) tracks of technical (assay) validation, biological/clinical validation and assessment of cost-effectiveness; the need for IB standardization and accreditation systems; the need to continually revisit IB precision; an alternative framework for biological/clinical validation of IBs; and the essential requirements for multicentre studies to qualify IBs for clinical use.Development of this roadmap received support from Cancer Research UK and the Engineering and Physical Sciences Research Council (grant references A/15267, A/16463, A/16464, A/16465, A/16466 and A/18097), the EORTC Cancer Research Fund, and the Innovative Medicines Initiative Joint Undertaking (grant agreement number 115151), resources of which are composed of financial contribution from the European Union's Seventh Framework Programme (FP7/2007-2013) and European Federation of Pharmaceutical Industries and Associations (EFPIA) companies' in kind contribution

GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands

GrassPlot is a collaborative vegetation-plot database organised by the Eurasian Dry Grassland Group (EDGG) and listed in the Global Index of Vegetation-Plot Databases (GIVD ID EU-00-003). GrassPlot collects plot records (releves) from grasslands and other open habitats of the Palaearctic biogeographic realm. It focuses on precisely delimited plots of eight standard grain sizes (0.0001; 0.001;... 1,000 m(2)) and on nested-plot series with at least four different grain sizes. The usage of GrassPlot is regulated through Bylaws that intend to balance the interests of data contributors and data users. The current version (v. 1.00) contains data for approximately 170,000 plots of different sizes and 2,800 nested-plot series. The key components are richness data and metadata. However, most included datasets also encompass compositional data. About 14,000 plots have near-complete records of terricolous bryophytes and lichens in addition to vascular plants. At present, GrassPlot contains data from 36 countries throughout the Palaearctic, spread across elevational gradients and major grassland types. GrassPlot with its multi-scale and multi-taxon focus complements the larger international vegetationplot databases, such as the European Vegetation Archive (EVA) and the global database " sPlot". Its main aim is to facilitate studies on the scale-and taxon-dependency of biodiversity patterns and drivers along macroecological gradients. GrassPlot is a dynamic database and will expand through new data collection coordinated by the elected Governing Board. We invite researchers with suitable data to join GrassPlot. Researchers with project ideas addressable with GrassPlot data are welcome to submit proposals to the Governing Board