Dust Emissivity in the Far-Infrared

We have derived the dust emissivity in the Far-Infrared (FIR) using data available in the literature. We use two wavelength dependences derived from spectra of Galactic FIR emission (Reach et al. 1995). A value for the emissivity, normalised to the extinction efficiency in the V band, has been retrieved from maps of Galactic FIR emission, dust temperature and extinction (Schlegel et al. 1998). Our results are similar to other measurements in the Galaxy but only marginally consistent with the widely quoted values of Hildebrand (1983) derived on one reflection nebula. The discrepancy with measurements on other reflection nebulae (Casey 1991) is higher and suggests a different grain composition in these environments with respect to the diffuse interstellar medium. We measure dust masses for a sample of six spiral galaxies with FIR observations and obtain gas-to-dust ratios close to the Galactic value.Comment: 5 pages, 1 ps file, A&A letter accepte

ISO observations of spirals: modelling the FIR emission

ISO observations at 200 micron have modified our view of the dust component in spiral galaxies. For a sample of seven resolved spirals we have retrieved a mean temperature of 20K, about 10K lower than previous estimates based on IRAS data at shorter wavelengths. Because of the steep dependence of far-infrared emission on the dust temperature, the dust masses inferred from ISO fluxes are a factor of 10 higher than those derived from IRAS data only, leading to gas-to-dust ratios close to the value observed in the Galaxy. The scale-length of the 200 micron emission is larger than for the IRAS 100 micron emission, with colder dust at larger distances from the galactic centre, as expected if the interstellar radiation field is the main source of dust heating. The 200 micron scale-length is also larger than the optical, for all the galaxies in the sample. This suggests that the dust distribution is more extended than that of the stars.A model of the dust heating is needed to derive the parameters of the dust distribution from the FIR emission. Therefore, we have adapted an existing radiative transfer code to deal with dust emission. Simulated maps of the temperature distribution within the dust disk and of the dust emission at any wavelength can be produced. The stellar spectral energy distribution is derived from observations in the ultraviolet, optical and near infrared. The parameters of the dust distribution (scale-lengths and optical depth) are chosen to reproduce the observed characteristics of the FIR emission, i.e. the shape of the spectrum, the flux and the spatial distribution. We describe the application of the model to one of the galaxies in the sample, NGC 6946.Comment: 6 pages, 5 figures. Contribution to the proceedings of the workshop "ISO Beyond Point Sources" held at VILSPA 14-17 September 199

SMA Imaging of CO(3-2) Line and 860 micron Continuum of Arp 220 : Tracing the Spatial Distribution of Luminosity

We used the Submillimeter Array (SMA) to image 860 micron continuum and CO(3-2) line emission in the ultraluminous merging galaxy Arp 220, achieving a resolution of 0.23" (80 pc) for the continuum and 0.33" (120 pc) for the line. The CO emission peaks around the two merger nuclei with a velocity signature of gas rotation around each nucleus, and is also detected in a kpc-size disk encompassing the binary nucleus. The dust continuum, in contrast, is mostly from the two nuclei. The beam-averaged brightness temperature of both line and continuum emission exceeds 50 K at and around the nuclei, revealing the presence of warm molecular gas and dust. The dust emission morphologically agrees with the distribution of radio supernova features in the east nucleus, as expected when a starburst heats the nucleus. In the brighter west nucleus, however, the submillimeter dust emission is more compact than the supernova distribution. The 860 micron core, after deconvolution, has a size of 50-80 pc, consistent with recent 1.3 mm observations, and a peak brightness temperature of (0.9-1.6)x10^2 K. Its bolometric luminosity is at least 2x10^{11} Lsun and could be ~10^{12} Lsun depending on source structure and 860 micron opacity, which we estimate to be of the order of tau_{860} ~ 1 (i.e., N_{H_2} ~ 10^{25} cm^{-2}). The starbursting west nuclear disk must have in its center a dust enshrouded AGN or a very young starburst equivalent to hundreds of super star clusters. Further spatial mapping of bolometric luminosity through submillimeter imaging is a promising way to identify the heavily obscured heating sources in Arp 220 and other luminous infrared galaxies.Comment: ApJ. in press. 26 pages, 10 figure

Small RNA profiling of low biomass samples: identification and removal of contaminants

Background Sequencing-based analyses of low-biomass samples are known to be prone to misinterpretation due to the potential presence of contaminating molecules derived from laboratory reagents and environments. DNA contamination has been previously reported, yet contamination with RNA is usually considered to be very unlikely due to its inherent instability. Small RNAs (sRNAs) identified in tissues and bodily fluids, such as blood plasma, have implications for physiology and pathology, and therefore the potential to act as disease biomarkers. Thus, the possibility for RNA contaminants demands careful evaluation. Results Herein, we report on the presence of small RNA (sRNA) contaminants in widely used microRNA extraction kits and propose an approach for their depletion. We sequenced sRNAs extracted from human plasma samples and detected important levels of non-human (exogenous) sequences whose source could be traced to the microRNA extraction columns through a careful qPCR-based analysis of several laboratory reagents. Furthermore, we also detected the presence of artefactual sequences related to these contaminants in a range of published datasets, thereby arguing in particular for a re-evaluation of reports suggesting the presence of exogenous RNAs of microbial and dietary origin in blood plasma. To avoid artefacts in future experiments, we also devise several protocols for the removal of contaminant RNAs, define minimal amounts of starting material for artefact-free analyses, and confirm the reduction of contaminant levels for identification of bona fide sequences using ‘ultra-clean’ extraction kits. Conclusion This is the first report on the presence of RNA molecules as contaminants in RNA extraction kits. The described protocols should be applied in the future to avoid confounding sRNA studies. Keywords: RNA sequencing; Artefact removal; Exogenous RNA in human blood plasma; Contaminant RNA; Spin column

The Banff 2019 Kidney Meeting Report (I): Updates on and clarification of criteria for T cell– and antibody-mediated rejection

The XV. Banff conference for allograft pathology was held in conjunction with the annual meeting of the American Society for Histocompatibility and Immunogenetics in Pittsburgh, PA (USA) and focused on refining recent updates to the classification, advances from the Banff working groups, and standardization of molecular diagnostics. This report on kidney transplant pathology details clarifications and refinements to the criteria for chronic active (CA) T cell–mediated rejection (TCMR), borderline, and antibody-mediated rejection (ABMR). The main focus of kidney sessions was on how to address biopsies meeting criteria for CA TCMR plus borderline or acute TCMR. Recent studies on the clinical impact of borderline infiltrates were also presented to clarify whether the threshold for interstitial inflammation in diagnosis of borderline should be i0 or i1. Sessions on ABMR focused on biopsies showing microvascular inflammation in the absence of C4d staining or detectable donor-specific antibodies; the potential value of molecular diagnostics in such cases and recommendations for use of the latter in the setting of solid organ transplantation are presented in the accompanying meeting report. Finally, several speakers discussed the capabilities of artificial intelligence and the potential for use of machine learning algorithms in diagnosis and personalized therapeutics in solid organ transplantation

Landscape of somatic single nucleotide variants and indels in colorectal cancer and impact on survival

Colorectal cancer (CRC) is a biologically heterogeneous disease. To characterize its mutational profile, we conduct targeted sequencing of 205 genes for 2,105 CRC cases with survival data. Our data shows several findings in addition to enhancing the existing knowledge of CRC. We identify PRKCI, SPZ1, MUTYH, MAP2K4, FETUB, and TGFBR2 as additional genes significantly mutated in CRC. We find that among hypermutated tumors, an increased mutation burden is associated with improved CRC-specific survival (HR=0.42, 95% CI: 0.21-0.82). Mutations in TP53 are associated with poorer CRC-specific survival, which is most pronounced in cases carrying TP53 mutations with predicted 0% transcriptional activity (HR=1.53, 95% CI: 1.21-1.94). Furthermore, we observe differences in mutational frequency of several genes and pathways by tumor location, stage, and sex. Overall, this large study provides deep insights into somatic mutations in CRC, and their potential relationships with survival and tumor features. Large scale sequencing study is of paramount importance to unravel the heterogeneity of colorectal cancer. Here, the authors sequenced 205 cancer genes in more than 2000 tumours and identified additional mutated driver genes, determined that mutational burden and specific mutations in TP53 are associated with survival odds

Combined Forward-Backward Asymmetry Measurements in Top-Antitop Quark Production at the Tevatron

The CDF and D0 experiments at the Fermilab Tevatron have measured the asymmetry between yields of forward- and backward-produced top and antitop quarks based on their rapidity difference and the asymmetry between their decay leptons. These measurements use the full data sets collected in proton-antiproton collisions at a center-of-mass energy of $\sqrt s =1.96$ TeV. We report the results of combinations of the inclusive asymmetries and their differential dependencies on relevant kinematic quantities. The combined inclusive asymmetry is $A_{\mathrm{FB}}^{t\bar{t}} = 0.128 \pm 0.025$. The combined inclusive and differential asymmetries are consistent with recent standard model predictions

Global age-sex-specific fertility, mortality, healthy life expectancy (HALE), and population estimates in 204 countries and territories, 1950-2019 : a comprehensive demographic analysis for the Global Burden of Disease Study 2019

Background: Accurate and up-to-date assessment of demographic metrics is crucial for understanding a wide range of social, economic, and public health issues that affect populations worldwide. The Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2019 produced updated and comprehensive demographic assessments of the key indicators of fertility, mortality, migration, and population for 204 countries and territories and selected subnational locations from 1950 to 2019. Methods: 8078 country-years of vital registration and sample registration data, 938 surveys, 349 censuses, and 238 other sources were identified and used to estimate age-specific fertility. Spatiotemporal Gaussian process regression (ST-GPR) was used to generate age-specific fertility rates for 5-year age groups between ages 15 and 49 years. With extensions to age groups 10–14 and 50–54 years, the total fertility rate (TFR) was then aggregated using the estimated age-specific fertility between ages 10 and 54 years. 7417 sources were used for under-5 mortality estimation and 7355 for adult mortality. ST-GPR was used to synthesise data sources after correction for known biases. Adult mortality was measured as the probability of death between ages 15 and 60 years based on vital registration, sample registration, and sibling histories, and was also estimated using ST-GPR. HIV-free life tables were then estimated using estimates of under-5 and adult mortality rates using a relational model life table system created for GBD, which closely tracks observed age-specific mortality rates from complete vital registration when available. Independent estimates of HIV-specific mortality generated by an epidemiological analysis of HIV prevalence surveys and antenatal clinic serosurveillance and other sources were incorporated into the estimates in countries with large epidemics. Annual and single-year age estimates of net migration and population for each country and territory were generated using a Bayesian hierarchical cohort component model that analysed estimated age-specific fertility and mortality rates along with 1250 censuses and 747 population registry years. We classified location-years into seven categories on the basis of the natural rate of increase in population (calculated by subtracting the crude death rate from the crude birth rate) and the net migration rate. We computed healthy life expectancy (HALE) using years lived with disability (YLDs) per capita, life tables, and standard demographic methods. Uncertainty was propagated throughout the demographic estimation process, including fertility, mortality, and population, with 1000 draw-level estimates produced for each metric. Findings: The global TFR decreased from 2·72 (95% uncertainty interval [UI] 2·66–2·79) in 2000 to 2·31 (2·17–2·46) in 2019. Global annual livebirths increased from 134·5 million (131·5–137·8) in 2000 to a peak of 139·6 million (133·0–146·9) in 2016. Global livebirths then declined to 135·3 million (127·2–144·1) in 2019. Of the 204 countries and territories included in this study, in 2019, 102 had a TFR lower than 2·1, which is considered a good approximation of replacement-level fertility. All countries in sub-Saharan Africa had TFRs above replacement level in 2019 and accounted for 27·1% (95% UI 26·4–27·8) of global livebirths. Global life expectancy at birth increased from 67·2 years (95% UI 66·8–67·6) in 2000 to 73·5 years (72·8–74·3) in 2019. The total number of deaths increased from 50·7 million (49·5–51·9) in 2000 to 56·5 million (53·7–59·2) in 2019. Under-5 deaths declined from 9·6 million (9·1–10·3) in 2000 to 5·0 million (4·3–6·0) in 2019. Global population increased by 25·7%, from 6·2 billion (6·0–6·3) in 2000 to 7·7 billion (7·5–8·0) in 2019. In 2019, 34 countries had negative natural rates of increase; in 17 of these, the population declined because immigration was not sufficient to counteract the negative rate of decline. Globally, HALE increased from 58·6 years (56·1–60·8) in 2000 to 63·5 years (60·8–66·1) in 2019. HALE increased in 202 of 204 countries and territories between 2000 and 2019