8 research outputs found
Conserved residues in the wheat (Triticum aestivum) NAM-A1 NAC domain are required for protein binding and when mutated lead to delayed peduncle and flag leaf senescence
- Publication venue
- Publication date
- 18/09/2019
- Field of study
An immune dysfunction score for stratification of patients with acute infection based on whole-blood gene expression
- Author
- Addison Jenni
- Allcock Alice
- Allcock Alice
- Andreou Prem
- Andrews Sarah
- Antcliffe David
- Arawwawala Dilshan
- Armitage Kelsey
- Atkinson Jane
- Baldwin Jacqueline
- Baudouin Simon
- Bellingan Geoffrey
- Bentley Andrew
- Bercades Georgia
- Bion Julian
- Bland Martin
- Boluda Susan
- Bonner Stephen
- Bowrey Sarah
- Brett Stephen
- Brown Abby
- Bullock Lynne
- Burnham Katie
- Burnham Katie L.
- Calder Verity
- Cano-Gamez Eddie
- Carrera Ronald
- Cawthor Louisa
- Davenport Emma
- Davenport Emma E.
- Doherty Nicola
- Drage Stephen
- Durcan John
- Errington Emily
- Faras-Arraya Roser
- Fletcher Simon
- GAinS Investigators
- Galley Helen
- Garrard Chris
- Garrard Christopher
- Glister Georgina
- Goh Cyndi
- Goh Cyndi
- Goodridge Victoria
- Gordon Anthony C.
- Gordon Tony
- Grier Sally
- Guleri Achyut
- Hales Dawn
- Hall Elaine
- Hall Peter
- Hall Sally
- Harrison Donna
- Hewlett Jackie
- Higgins David
- Higham Charley
- Higham Charley
- Hind Charles
- Hinds Charles J.
- Hugil Keith
- Humphreys John
- Hutton Paula
- Hyun Ryu Jung
- Jacques Nicola
- Jefferies Fiona
- Kapila Atul
- Kazembe Sandra
- Kitson David
- Knight Julian
- Knight Julian C.
- Krige Anton
- Kuper Martin
- Kwok Andrew
- Laha Shond
- Lees Sarah
- Lowes Sarah
- Malick Zunaira H.
- Mappleback Sarah
- Marshall Richard
- Maugeri Narelle
- Mccalman Katie
- McCauley Marie
- McKechnie Stuart
- McKechnie Stuart
- McLees Eleanor
- Mi Yuxin
- Millar Joanne
- Millo Julian
- Mills Gary
- Mitchell Natalie
- Mitchell-Inwang Christine
- Montgomery Hugh
- Moreno Cuesta Jeronimo
- Moreno Juan
- Mountford Laura
- Nilson Annette
- Ochelli-Okpue Adaeze
- Ortiz-Ruiz de Gordoa Laura
- Overend Lauren
- Pahary Sheik
- Parsons Penny
- Payne Heather
- Perry Elsa Jane
- Peters-Sengers Hessel
- Poll Tom van der
- Prowse Heather
- Purdy Alice
- Radhakrishnan Jayachandran
- Raymode Parizade
- Rich Natalie
- Roberts Emma
- Rosbergen Melissa
- Roughton Sian
- Ruel Sebastian
- Scicluna Brendon P.
- Short Alasdair
- Smith David A.
- Smiths Alex
- Smolen Susan
- Soar Jasmeet
- Soar Jasmeet
- Stotz Martin
- Swan Catherine
- Swan Karen
- Taylor Jane
- Templeton Maie
- Tennant Heather
- Thompson Jonathan
- Venatesh Pyda
- Waddington Natalia
- Walsh Angela
- Walsh Helen
- Ward Geraldine
- Watson D.
- Webster Nigel
- Whitehead Iain
- Wilde Jude
- Williams Sarah
- Willis Heather
- Wilson Robert
- Young Duncan
- Publication venue
- 'American Association for the Advancement of Science (AAAS)'
- Publication date
- 01/01/2022
- Field of study
Dysregulated host responses to infection can lead to organ dysfunction and sepsis, causing millions of global deaths each year. To alleviate this burden, improved prognostication and biomarkers of response are urgently needed. We investigated the use of whole-blood transcriptomics for stratification of patients with severe infection by integrating data from 3149 samples from patients with sepsis due to community-acquired pneumonia or fecal peritonitis admitted to intensive care and healthy individuals into a gene expression reference map. We used this map to derive a quantitative sepsis response signature (SRSq) score reflective of immune dysfunction and predictive of clinical outcomes, which can be estimated using a 7- or 12-gene signature. Last, we built a machine learning framework, SepstratifieR, to deploy SRSq in adult and pediatric bacterial and viral sepsis, H1N1 influenza, and COVID-19, demonstrating clinically relevant stratification across diseases and revealing some of the physiological alterations linking immune dysregulation to mortality. Our method enables early identification of individuals with dysfunctional immune profiles, bringing us closer to precision medicine in infection.peer-reviewe
A blood atlas of COVID-19 defines hallmarks of disease severity and specificity.
- Author
- Ahern David J
- Ai Zhichao
- Ainsworth Mark
- Allan Chris
- Allcock Alice
- Angus Brian
- Ansari M Azim
- Arancibia-Carcamo Carolina V
- Aschenbrenner Dominik
- Attar Moustafa
- Baillie J Kenneth
- Barnes Eleanor
- Bashford-Rogers Rachael
- Bashyal Archana
- Beer Sally
- Berridge Georgina
- Beveridge Amy
- Bibi Sagida
- Bicanic Tihana
- Blackwell Luke
- Bowness Paul
- Brent Andrew
- Brown Andrew
- Broxholme John
- Buck David
- Burnham Katie L
- Byrne Helen
- Camara Susana
- Charles Philip
- Chen Wentao
- Chen Yi-Ling
- Chong Amanda
- Clutterbuck Elizabeth A
- Coles Mark
- Conlon Christopher P
- Cornall Richard
- Cribbs Adam P
- Curion Fabiola
- Davenport Emma E
- Davidson Neil
- Davis Simon
- Delgado Alberto Santos
- Dendrou Calliope A
- Dequaire Julie
- Dib Lea
- Docker James
- Dold Christina
- Dong Tao
- Downes Damien
- Drakesmith Hal
- Dunachie Susanna J
- Duncan David A
- Eijsbouts Chris
- Esnouf Robert
- Espinosa Alexis
- Etherington Rachel
- Fairfax Benjamin
- Fairhead Rory
- Fang Hai
- Fassih Shayan
- Felle Sally
- Ferreira Ivan Candido
- Ferreira Ricardo
- Fischer Roman
- Foord Thomas
- Forrow Aden
- Frater John
- Fries Anastasia
- Garner Lucy C
- Geeves Clementine
- Georgiou Dominique
- Godfrey Leila
- Golubchik Tanya
- Green Angie
- Harper Hong
- Harrington Heather A
- Heilig Raphael
- Hester Svenja
- Hill Jennifer
- Hinds Charles
- Hird Clare
- Ho Ling-Pei
- Hoekzema Renee
- Hollis Benjamin
- Hughes Jim
- Hutton Paula
- Jackson-Wood Matthew A
- Jainarayanan Ashwin
- James-Bott Anna
- Jansen Kathrin
- Jeffery Katie
- Jones Elizabeth
- Jostins Luke
- Karali Christina Simoglou
- Kerr Georgina
- Kim David
- Klenerman Paul
- Knight Julian C
- Kumar Vinod
- Kurupati Prathiba
- Kwok Andrew
- Lee Angela
- Linder Aline
- Lockett Teresa
- Lonie Lorne
- Lopopolo Maria
- Lukoseviciute Martyna
- Luo Jian
- Marinou Spyridoula
- Marsden Brian
- Martinez Jose
- Matthews Philippa C
- Mazurczyk Michalina
- McGowan Simon
- McKechnie Stuart
- Mead Adam
- Mendoza Maria Fernandez
- Mentzer Alexander J
- Mi Yuxin
- Monaco Claudia
- Montadon Ruddy
- Napolitani Giorgio
- Nassiri Isar
- Novak Alex
- O'Brien Darragh P
- O'Connor Daniel
- O'Donnell Denise
- Ogg Graham
- Overend Lauren
- Park Inhye
- Pavord Ian
- Peng Yanchun
- Penkava Frank
- Peres Raphael Sanches
- Perez Elena
- Pinho Mariana Pereira
- Pollard Andrew J
- Powrie Fiona
- Psaila Bethan
- Quan T Phuong
- Repapi Emmanouela
- Revale Santiago
- Rich-Griffin Charlotte
- Richard Jean-Baptiste
- Ritter Thomas
- Rollier Christine S
- Rowland Matthew
- Ruehle Fabian
- Salio Mariolina
- Sanchez Veronica Gallardo
- Sansom Stephen Nicholas
- Sauka-Spengler Tatjana
- Schwessinger Ron
- Scozzafava Giuseppe
- Screaton Gavin
- Seigal Anna
- Semple Malcolm G
- Sergeant Martin
- Sharma Piyush Kumar
- Silva-Reyes Laura
- Sims David
- Skelly Donal
- Slawinski Hubert
- Sobrinodiaz Alberto
- Sousos Nikolaos
- Stafford Lizzie
- Stockdale Lisa
- Strickland Marie
- Sumray Otto
- Sun Bo
- Taylor Adan
- Taylor Chelsea
- Taylor Stephen
- Thongjuea Supat
- Thraves Hannah
- Todd John A
- Tomic Adriana
- Tong Orion
- Trebes Amy
- Trzupek Dominik
- Tucci Felicia Anna
- Turtle Lance
- Udalova Irina
- Uhlig Holm
- van Grinsven Erinke
- Vazquez Maria Gomez
- Vendrell Iolanda
- Verheul Marije
- Voda Alexandru
- Wang Dapeng
- Wang Guanlin
- Wang Lihui
- Watkinson Peter
- Watson Robert
- Weinberger Michael
- Whalley Justin
- Witty Lorna
- Wray Katherine
- Xue Luzheng
- Yeung Hing Yuen
- Yin Zixi
- Young Rebecca K
- Youngs Jonathan
- Zhang Ping
- Zurke Yasemin-Xiomara
- Publication venue
- Elsevier
- Publication date
- 01/01/2021
- Field of study
Treatment of severe COVID-19 is currently limited by clinical heterogeneity and incomplete description of specific immune biomarkers. We present here a comprehensive multi-omic blood atlas for patients with varying COVID-19 severity in an integrated comparison with influenza and sepsis patients versus healthy volunteers. We identify immune signatures and correlates of host response. Hallmarks of disease severity involved cells, their inflammatory mediators and networks, including progenitor cells and specific myeloid and lymphocyte subsets, features of the immune repertoire, acute phase response, metabolism, and coagulation. Persisting immune activation involving AP-1/p38MAPK was a specific feature of COVID-19. The plasma proteome enabled sub-phenotyping into patient clusters, predictive of severity and outcome. Systems-based integrative analyses including tensor and matrix decomposition of all modalities revealed feature groupings linked with severity and specificity compared to influenza and sepsis. Our approach and blood atlas will support future drug development, clinical trial design, and personalized medicine approaches for COVID-19
Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype
- Author
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 17/06/2020
- Field of study
Epstein-Barr virus (EBV) reactivation is common in sepsis patients but the extent and nature of this remains unresolved. We sought to determine the incidence and correlates of EBV-positivity in a large sepsis cohort. We also hypothesised that EBV reactivation would be increased in patients in whom relative immunosuppression was the major feature of their sepsis response. To identify such patients we aimed to use knowledge of sepsis response subphenotypes based on transcriptomic studies of circulating leukocytes, specifically patients with a Sepsis Response Signature endotype (SRS1) that we have previously shown to be associated with increased mortality and features of immunosuppression. We assayed EBV from the plasma of intensive care unit (ICU) patients with sepsis due to community-acquired pneumonia. In total 730 patients were evaluated by targeted metagenomics (n = 573 patients), digital droplet PCR (n = 565), or both (n = 408). We had previously analysed gene expression in peripheral blood leukocytes for a subset of individuals (n = 390). We observed a 37% incidence of EBV-positivity. EBV reactivation was associated with longer ICU stay (12.9 vs 9.2 days; p = 0.004) and increased organ failure (day 1 SOFA score 6.9 vs 5.9; p = 0.00011). EBV reactivation was associated with the relatively immunosuppressed SRS1 endotype (p = 0.014) and differential expression of a small number of biologically relevant genes. These findings are consistent with the hypothesis that viral reactivation in sepsis is a consequence of immune compromise and is associated with increasing severity of illness although further mechanistic studies are required to definitively illustrate cause and effect
Conserved residues in the wheat (Triticum aestivum) NAM-A1 NAC domain are required for protein binding and when mutated lead to delayed peduncle and flag leaf senescence
- Author
- A Maqbool
- A Vullo
- A Whittal
- AJ Worland
- AN Olsen
- AN Olsen
- AR Wellburn
- BC Cunningham
- BM Waters
- C Uauy
- C Uauy
- C Uauy
- Cristobal Uauy
- D Chen
- D Zhao
- DH Welner
- E Souer
- F Sievers
- F Wang
- Fabien Cormier
- G-P Xue
- H Feng
- H Ooka
- HA Ernst
- JA Capra
- JC Zadoks
- JS Jeong
- KV Krasileva
- Lauren E. Overend
- LS Tran
- M Aida
- M Collinge
- M Kang
- M Noguero
- M Å tros
- MJ Guttieri
- MK Jensen
- N Xia
- N Xia
- Nicolas Cobo
- P Borrill
- P Borrill
- P Borrill
- PC Ng
- Philippa Borrill
- Q Huang
- Q Xie
- R Appels
- R Avni
- RH Ramirez-Gonzalez
- RH Ramirez-Gonzalez
- RH RamÃrez-González
- S Pearce
- SM Grogan
- Sophie A. Harrington
- T Kichey
- T Nakagawa
- TP Garnett
- X Mao
- X Mao
- Y Guo
- Y Tang
- Y Zong
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Annual Selected Bibliography
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Progression of Geographic Atrophy in Age-related Macular Degeneration
- Author
- A. Christine Hoerner
- Aaron Parnes
- Aaron Weinberg
- Abraham Poulose
- Adam Berger
- Adam Gerstenblith
- Adam Smucker
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- Tarek S. Hassan
- Tatiana Mikheyav
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- Thomas B. Connor
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- Thomas J. Hwang
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- Thomas S. Stevens
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- Tiana Gonzales
- Tiarnan D. Keenan
- Tien Pei Wong
- Tiffanie Keaton
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- Tim Odem
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- Tod A. McMillan
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- Trexler Topping
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- Uma Balasubramaniam
- Ursula Lord Bator
- Valerie Davis
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- Vinad Voleti
- Virginia Therrien
- Vivian Tanner
- W. Copley McLean
- W. Scott Thompson
- W. Zachery Bridges
- Wai T. Wong
- Wai T. Wong
- Waldemar Torres
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- Wanda Carrasquillo-Boyd
- Wang
- Wayne A. Solley
- Wendy McBee
- Wenhua Li
- Willia Ingram
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- William J. Wirostko
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- William Rosenthal
- William Tasman
- Yaspan
- Yehoshua
- Yehoshua
- Yehoshua
- Yehoshua
- Yesenia Ovando
- Yesmin Urias
- Yin Chen
- Yolanda Konior
- Yu
- Yu-Guang He
- Zayna Nahas
- Zbigniew Krason
- Zlatan Sadikovic
- Zohar Yehoshua
- Zuzanna Rozenbajgier
- Publication venue
- 'Elsevier BV'
- Publication date
- Field of study
Subretinal Hyperreflective Material in the Comparison of Age-Related Macular Degeneration Treatments Trials
- Author
- A. Tom Ghuman
- Aaron Towe
- Abby Brotherton
- Adam Brooks
- Adam Specker
- Adam Zamboni
- Adrienne Brower-Lingsch
- Aida Ayyad
- Alan Letson
- Alan Margherio
- Alan Ruby
- Albert Edwards
- Albert Frederick
- Alecia Travis
- Alessandro Castellarin
- Alex S. Willoughby
- Alex Schlosser
- Alexander Ho
- Alexander Khvatov
- Alexander Melamud
- Allen Ho
- Allison Cassidy
- Allison Guidry
- Allison Schnader
- Alysia Cronise
- Amanda Barnett
- Amanda Battcher
- Amanda Butt
- Amanda Bye
- Amanda Dinatale
- Amanda Fec
- Amanda Milliron
- Amanda Palomo
- Ames Munden
- Amy Dilback
- Amy Harris
- Amy Leviton
- Amy Martir
- Amy Noffke
- Amy Schultz
- Andreas Lauer
- Andrew Barkmeier
- Andrew N. Antoszyk
- Angela Price
- Angela Wealti
- Angie Karow
- Ann Arnold
- Ann Borthwick
- Ann Lundquist
- Anna Fagan
- Anne Lindblad
- Annette Vaughn
- AnnMarie Lavorna
- Antonio Capone
- April E. Harris
- Arthur D. Fu
- Arthur Willis
- Arun Patel
- Ashish Sharma
- Ashley Lester
- Avni Vyas
- Baker Hubbard
- Barbara Blodi
- Barbara Connell
- Barbara J. Ciscato
- Barbara Soderling
- Barbara Taylor
- Barry Golub
- Beau Richter
- Belinda Kosinski
- Bernard H. Doft
- Bertha Luevano
- Beth Daniels
- Beth Winder
- Bethany Sink
- Betsy Hendrix
- Blaine Cribbs
- Bob Boleman
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- Bradley Jost
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- Brenda Branchaud
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- Bridget Forke
- Brittany Ross
- Brooke Waller
- Brooks McCuen
- Brown
- Bruce Garretson
- Bruce Keyser
- Bryan Schwent
- C. Nicki Lenane
- Cameron Javid
- Candace Parker
- Candace Pereira
- Candice DuLong
- Carl C. Awh
- Carl Regillo
- Carmen Chan-Tram
- Carmen Lopez
- Carol Crooks
- Carol Slagle
- Carolyn Herbert
- Carolyn Walters
- Carrie Tarter
- Cary Stoever
- Cassandra J. Barnhart
- Cassie Cahill
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- Grunwald
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- Hayashi
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- Ying
- Publication venue
- 'Elsevier BV'
- Publication date
- Field of study