Reply to discussion on 'A high-precision U-Pb age constraint on the Rhynie Chert Konservat-Lagerstatte: time scale and other implications': Journal, 168, 863-872

We welcome the opportunity to address the points raised by Mark et al. in their discussion of the chemical abrasion isotope dilution thermal ionization mass spectrometry (CA–ID–TIMS) U–Pb age constraint on the Rhynie Chert Konservat-Lagerstätte presented by Parry et al. (2011) and also to make some further observations of our own. We begin by briefly providing some context for the benefit of the wider readership. Two radio-isotopic age constraints on the Rhynie Chert Konservat-Lagerstätte and, by corollary, its parental hydrothermal (hot-spring) system have recently been published. The first of these is a weighted mean 40Ar/39Ar plateau age of 403.9 ± 2.1 Ma (2σ) derived from the analysis of two samples of vein-hosted hydrothermal K-feldspar and a single sample of hydrothermally altered andesite (Mark et al. 2011). In order to account for systematic uncertainties associated with the 40Ar/39Ar geochronometer, Mark et al. (2011) recalculated their individual sample ages with reference to the Fish Canyon Tuff sanidine (FCs) age of 28.201 Ma (Kuiper et al. 2008), thereby producing a ‘U–Pb comparable’ mean age of 407.1 ± 2.2 Ma (2σ). An alternative ‘preferred age’ for the Rhynie hot-spring activity (407.6 ± 2.2 Ma (2σ)) has now been produced from the ‘raw’ data using the optimization model of Renne et al. (2010, 2011) (this discussion). The 40Ar/39Ar system calibrations on which these various ages are based are summarized in Table 1. The second radio-isotopic age constraint in question is a weighted mean 206Pb/238U zircon age of 411.5 ± 1.3 Ma (2σ, including decay constant- and tracer calibration-related uncertainties; MSWD = 0.12, n = 4) yielded by the Milton of Noth Andesite, a moderately altered basaltic andesite lava flow (cum near-surface sill?) that lies along the northwestern margin of the Rhynie Outlier (Parry et al. 2011). U–Pb titanite data corroborate the zircon data, and c. 411.5 Ma is interpreted as the crystallization-eruption age of the Milton of Noth Andesite. Lavas and tuffs of andesitic composition occur elsewhere within the northern half of the Rhynie Outlier (Rice & Ashcroft 2004) and a holistic view of the available evidence would suggest that these volcanic rocks represent the surficial expression of the thermal drive for the Rhynie hot-spring system. Parry et al. (2011) therefore concluded that that the U–Pb zircon age yielded by the Milton of Noth Andesite dates the Rhynie hydrothermal activity within error [our italics]

Reconstruction of MIS 5 climate in the central Levant using a stalagmite from Kanaan Cave, Lebanon

Lying at the transition between the temperate Mediterranean domain and subtropical deserts, the Levant is a key area to study the palaeoclimatic response over glacial–interglacial cycles. This paper presents a precisely dated last interglacial (MIS 5) stalagmite (129–84 ka) from the Kanaan Cave, Lebanon. Variations in growth rate and isotopic records indicate a warm humid phase at the onset of the last interglacial at ~ 129 ka that lasted until ~ 125 ka. A gradual shift in speleothem isotopic composition (125–122 ka) is driven mainly by the δ18O source effect of the eastern Mediterranean surface waters during sapropel 5 (S5). The onset of glacial inception began after ~ 122 ka, interrupted by a short wet pulse during the sapropel 4 (S4) event. Low growth rates and enriched oxygen and carbon values until ~ 84 ka indicate a transition to drier conditions during Northern Hemisphere glaciation

Rapid thermal rejuvenation of high-crystallinity magma linked to porphyry copper deposit formation; evidence from the Koloula Porphyry Prospect, Solomon Islands

Magmas containing the components needed to form porphyry copper deposits are relatively common within arcs, yet mineralising events are uncommon within the long-lived magmatic systems that host them. Understanding what causes the transition from barren to productive intrusions is critical to the development of conceptual deposit models. We have constrained the tempo of pre- and syn-mineralisation magmatic events in relationship to the thermal evolution of the plutonic body that underlies one of the world's youngest exposed plutonic–porphyry systems, the Inamumu Zoned Pluton, Koloula Porphyry Prospect, Solomon Islands. High precision ID-TIMS U–Pb dates of texturally and chemically characterised zircons indicate pluton emplacement over 50% crystals) state, past the point of rheological lock-up. We estimate that thermal rejuvenation of the deeper high-crystallinity magma and generation of a mobile melt fraction may have occurred ≤10 kyr before its transport and emplacement within the porphyry environment. The underlying pluton likely cooled and returned to high-crystallinity states prior to subsequent remobilisation-emplacement events. Titanium-in-zircon geothermometry and whole-rock geochemistry suggest pre-mineralisation intrusions were remobilised by mixing of a silicic magma with a high-temperature, less-evolved melt. In contrast, syn-mineralisation melts were most likely remobilised by the percolation of hot volatiles exsolved from contemporaneous less-evolved intrusions cooling beneath the crystalline silicic magma. The evidence for the rapid thermal rejuvenation and long term storage of highly crystalline silicic magmas is consistent with previous studies that indicate two components of exsolved volatiles contribute to ore forming fluids. We conclude that the liberation of crystal-rich porphyry copper deposit forming magmas, and the addition of the chemical components required for ore formation, are intrinsically linked to the volatiles released during the recharge of less-evolved melt into a highly crystalline silicic magma

Nonintegrable Interaction of Ion-Acoustic and Electromagnetic Waves in a Plasma

In this paper we re-examine the one-dimensional interaction of electromagnetic and ion acoustic waves in a plasma. Our model is similar to one solved by Rao et al. (Phys. Fluids, vol. 26, 2488 (1983)) under a number of analytical approximations. Here we perform a numerical investigation to examine the stability of the model. We find that for slightly over dense plasmas, the propagation of stable solitary modes can occur in an adiabatic regime where the ion acoustic electric field potential is enslaved to the electromagnetic field of a laser. But if the laser intensity or plasma density increases or the laser frequency decreases, the adiabatic regime loses stability via a transition to chaos. New asymptotic states are attained when the adiabatic regime no longer exists. In these new states, the plasma becomes rarefied, and the laser field tends to behave like a vacuum field.Comment: 19 pages, REVTeX, 6 ps figures, accepted for publication in Phys. Rev.

The calibration of the Sudbury Neutrino Observatory using uniformly distributed radioactive sources

The production and analysis of distributed sources of 24Na and 222Rn in the Sudbury Neutrino Observatory (SNO) are described. These unique sources provided accurate calibrations of the response to neutrons, produced through photodisintegration of the deuterons in the heavy water target, and to low energy betas and gammas. The application of these sources in determining the neutron detection efficiency and response of the 3He proportional counter array, and the characteristics of background Cherenkov light from trace amounts of natural radioactivity is described.Comment: 24 pages, 13 figure

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types

The Sudbury Neutrino Observatory

The Sudbury Neutrino Observatory is a second generation water Cherenkov detector designed to determine whether the currently observed solar neutrino deficit is a result of neutrino oscillations. The detector is unique in its use of D2O as a detection medium, permitting it to make a solar model-independent test of the neutrino oscillation hypothesis by comparison of the charged- and neutral-current interaction rates. In this paper the physical properties, construction, and preliminary operation of the Sudbury Neutrino Observatory are described. Data and predicted operating parameters are provided whenever possible.Comment: 58 pages, 12 figures, submitted to Nucl. Inst. Meth. Uses elsart and epsf style files. For additional information about SNO see http://www.sno.phy.queensu.ca . This version has some new reference

On the mechanisms governing gas penetration into a tokamak plasma during a massive gas injection

A new 1D radial fluid code, IMAGINE, is used to simulate the penetration of gas into a tokamak plasma during a massive gas injection (MGI). The main result is that the gas is in general strongly braked as it reaches the plasma, due to mechanisms related to charge exchange and (to a smaller extent) recombination. As a result, only a fraction of the gas penetrates into the plasma. Also, a shock wave is created in the gas which propagates away from the plasma, braking and compressing the incoming gas. Simulation results are quantitatively consistent, at least in terms of orders of magnitude, with experimental data for a D 2 MGI into a JET Ohmic plasma. Simulations of MGI into the background plasma surrounding a runaway electron beam show that if the background electron density is too high, the gas may not penetrate, suggesting a possible explanation for the recent results of Reux et al in JET (2015 Nucl. Fusion 55 093013)

Velocity-space sensitivity of the time-of-flight neutron spectrometer at JET

The velocity-space sensitivities of fast-ion diagnostics are often described by so-called weight functions. Recently, we formulated weight functions showing the velocity-space sensitivity of the often dominant beam-target part of neutron energy spectra. These weight functions for neutron emission spectrometry (NES) are independent of the particular NES diagnostic. Here we apply these NES weight functions to the time-of-flight spectrometer TOFOR at JET. By taking the instrumental response function of TOFOR into account, we calculate time-of-flight NES weight functions that enable us to directly determine the velocity-space sensitivity of a given part of a measured time-of-flight spectrum from TOFOR