Local soil quality assessment of north-central Namibia: integrating farmers' and technical knowledge

Soil degradation is a major threat for farmers of semi-arid north-central Namibia. Soil conservationpractices can be promoted by the development of soil quality (SQ) evaluation toolboxes that provide ways to evaluate soil degradation. However, such toolboxes must be adapted to local conditions to reach farmers. Based on qualitative (interviews and soil descriptions) and quantitative (laboratory analyses) data, we developed a set of SQ indicators relevant for our study area that integrates farmers’ field experiences (FFEs) and technical knowledge. We suggest using participatory mapping to delineate soil units (Oshikwanyama soil units, KwSUs) based on FFEs, which highlight mostly soil properties that integrate long-term productivity and soil hydrological characteristics (i.e. internal SQ). The actual SQ evaluation of a location depends on the KwSU described and is thereafter assessed by field soil texture (i.e. chemical fertility potential) and by soil colour shade (i.e. SOC status). This three-level information aims to reveal SQ improvement potential by comparing, for any location, (a) estimated clay content against median clay content (specific to KwSU) and (b) soil organic status against calculated optimal values (depends on clay content). The combination of farmers’ and technical assessment cumulates advantages of both systems of knowledge, namely the integrated long-term knowledge of the farmers and a short- and medium-term SQ status assessment. The toolbox is a suggestion for evaluating SQ and aims to help farmers, rural development planners and researchers from all fields of studies understanding SQ issues in north-central Namibia. This suggested SQ toolbox is adapted to a restricted area of north-central Namibia, but similar tools could be developed in most areas where small-scale agriculture prevails

Mapping decadal land cover changes in the woodlands of north eastern Namibia from 1975 to 2014 using the Landsat satellite archived data

Woodlands and savannahs provide essential ecosystem functions and services to communities. On the African continent, they are widely utilized and converted to subsistence and intensive agriculture or urbanized. This study investigates changes in land cover over four administrative regions of North Eastern Namibia within the Kalahari woodland savannah biome, covering a total of 107,994 km2. Land cover is mapped using multi-sensor Landsat imagery at decadal intervals from 1975 to 2014, with a post-classification change detection method. The dominant change observed was a reduction in the area of woodland savannah due to the expansion of agriculture, primarily in the form of small-scale cereal and pastoral production. More specifically, woodland savannah area decreased from 90% of the study area in 1975 to 83% in 2004, and then increased to 86% in 2014, while agricultural land increased from 6% to 12% between 1975 and 2014. We assess land cover changes in relation to towns, villages, rivers and roads and find most changes occurred in proximity to these. In addition, we find that most land cover changes occur within land designated as communally held, followed by state protected land. With widespread changes occurring across the African continent, this study provides important data for understanding drivers of change in the region and their impacts on the distribution of woodland savannahs

Deciphering the porcine intestinal microRNA transcriptome

<p>Abstract</p> <p>Background</p> <p>While more than 700 microRNAs (miRNAs) are known in human, a comparably low number has been identified in swine. Because of the close phylogenetic distance to humans, pigs serve as a suitable model for studying e.g. intestinal development or disease. Recent studies indicate that miRNAs are key regulators of intestinal development and their aberrant expression leads to intestinal malignancy.</p> <p>Results</p> <p>Here, we present the identification of hundreds of apparently novel miRNAs in the porcine intestine. MiRNAs were first identified by means of deep sequencing followed by miRNA precursor prediction using the miRDeep algorithm as well as searching for conserved miRNAs. Second, the porcine miRNAome along the entire intestine (duodenum, proximal and distal jejunum, ileum, ascending and transverse colon) was unraveled using customized miRNA microarrays based on the identified sequences as well as known porcine and human ones. In total, the expression of 332 intestinal miRNAs was discovered, of which 201 represented assumed novel porcine miRNAs. The identified hairpin forming precursors were in part organized in genomic clusters, and most of the precursors were located on chromosomes 3 and 1, respectively. Hierarchical clustering of the expression data revealed subsets of miRNAs that are specific to distinct parts of the intestine pointing to their impact on cellular signaling networks.</p> <p>Conclusions</p> <p>In this study, we have applied a straight forward approach to decipher the porcine intestinal miRNAome for the first time in mammals using a piglet model. The high number of identified novel miRNAs in the porcine intestine points out their crucial role in intestinal function as shown by pathway analysis. On the other hand, the reported miRNAs may share orthologs in other mammals such as human still to be discovered.</p

Genomic and Phenotypic Analysis of an ESBL-Producing E. coli ST1159 Clonal Lineage From Wild Birds in Mongolia

Background In addition to the broad dissemination of pathogenic extended-spectrum beta-lactamase (ESBL)-producing Escherichia (E.) coli in human and veterinary medicine and the community, their occurrence in wildlife and the environment is a growing concern. Wild birds in particular often carry clinically relevant ESBL-producing E. coli. Objectives We analyzed ESBL-producing and non-ESBL-producing E. coli obtained from wild birds in Mongolia to identify phylogenetic and functional characteristics that would explain the predominance of a particular E. coli clonal lineage in this area. Methods We investigated ESBL-producing E. coli using whole-genome sequencing and phylogenetics to describe the population structure, resistance and virulence features and performed phenotypic experiments like biofilm formation and adhesion to epithelial cells. We compared the phenotypic characteristics to non-ESBL-producing E. coli from the same background (Mongolian wild birds) and genomic results to publicly available genomes. Results and Conclusion We found ESBL-producing E. coli sequence type (ST) 1159 among wild birds in Mongolia. This clonal lineage carried virulence features typical for extra-intestinal pathogenic or enterotoxigenic E. coli. Comparative functional experiments suggested no burden of resistance in the ST1159 isolates, which is despite their carriage of ESBL-plasmids. Wild birds will likely disseminate these antibiotic-resistant pathogens further during migration

Pikachu und Co: soziologische Perspektiven auf Pokémon Go

Das Trendspiel Pokémon Go erreichte im Sommer 2016 hohe Downloadzahlen und eine breite mediale Aufmerksamkeit. In der vorliegenden explorativen Studie wird der von Pokémon Go angesprochene Personenkreis charakterisiert und die Gründe für den großen Erfolg des Spiels untersucht. Zudem leistet dieses Paper eine kritische Prüfung der Nachhaltigkeit des Phänomens Pokémon Go. Die Autorengruppe zeigt, dass Pokémon Go überwiegend die jüngere Generation anspricht, was wiederum mit dem zentralen Motiv für das Spielen von Pokémon Go zusammenhängt: nostalgische Kindheitserinnerungen an Pokémon. Die Probandinnen und Probanden benennen abgesehen von dem klar identifizierten Nostalgieaspekt eine unübersichtliche Gemengelage aus Augmented Reality, Mobilitätsanreiz, Alltagsintegration und Gemeinschaftsfaktor, üben aber auch Kritik an der Spielmechanik. Der Medienhype und der erfolgreich gewählte Veröffentlichungszeitraum des Spiels verstärkten den Erfolg

The second workshop on lists of commercial fish and shellfish species for reporting of MSFD D3 (WKD3Lists2)

WKD3Lists2 created lists of regionally relevant commercial fish and shellfish species (and higher order taxa) for the use of Article 8 reporting by EU member states under Descriptor 3 of the Marine Strategy Framework Directive (MSFD). The regional taxa lists were based on landings data from the Fisheries Dependent Information data base (FDI) provided by EU member states and compiled by the Joint Research Centre (JRC). The taxonomy of landings data was consolidated by regional experts and the consolidated data were combined to obtain absolute and proportional landing weights and values for each (sub)re-gion, which were used to apply dual (weight and vale) selection thresholds to compile (sub)re-gional D3-taxa-lists. Regional D3-taxa-lists were produced for two MSFD regions (Baltic Sea & Black Sea) and eight MSFD subregions: The Greater North Sea, Celtic Seas, the Bay of Biscay and Iberian Coast, Mac-aronesia, Western Mediterranean, the Ionian Sea & Central Mediterranean, the Adriatic Sea and the Aegean-Levantine Sea. To exclude taxa with very low landing weights or value from the final lists, two types of thresh-olds (cumulative and minimum) with differing cut-off values were evaluated (90%, 95%, 98% and 99% for cumulative and 0.1% and 1% for minimum thresholds). Depending on the cut-off value, the number of taxa included varied substantially and in most (sub)regions the application of thresholds reduced the initial number of taxa by more than 50%. WKD3Lists2 did not recommend any threshold type or cut-off value to be applied generically in all (sub)regions, but identified trade-offs between inclusiveness and parsimony of relevant con-tent i.e. higher cut-off values will lead to longer lists including many taxa with relatively low landings weights/values. In some (sub)regions, thresholds with lower cut-off values (90% to 95%) were considered feasible by regional experts (Mediterranean subregions, Bay of Biscay and Iberian Coast, Macaronesia), whereas in other MSFD (sub)regions cut-off values in the range of 98-99% were considered as appropriate (Baltic Sea, Greater North Sea, Celtic Seas). The regional D3-taxa lists by WKD3Lists2 were created without considering the availability of data or assessments i.e. many species are included, for which no assessment information is avail-able. WKD3Lists2 decided on this approach because a representative selection of commercially targeted taxa was considered to indicate knowledge and data gaps in current data collection and assessment schemes. Regional species lists shall be used by EU member states for the national reporting of D3. Stocks and species from the regional lists shall be considered by member states, and additional stocks/species can be added where appropriate (e.g. those stocks/species of national or local of importance that do not appear on the regional lists). x WKD3Lists2 discussed and compiled recommendations on how Member States can complement the regional lists of D3-taxa. A key recommendation is to maintain taxa reported in 2018 under D3, even if they are not part of the regional D3-taxa list for 2024. Wherever possible, Member States should report on stock level. WKD3Lists2 also discussed linkages between D1 and D3-reporting of commercial taxa.info:eu-repo/semantics/publishedVersio

The mitochondrial import protein Mim1 promotes biogenesis of multispanning outer membrane proteins

The Mim1 complex imports α-helical mitochondrial outer membrane proteins with multiple transmembrane segments

Coulomb dissociation of O-16 into He-4 and C-12

We measured the Coulomb dissociation of O-16 into He-4 and C-12 within the FAIR Phase-0 program at GSI Helmholtzzentrum fur Schwerionenforschung Darmstadt, Germany. From this we will extract the photon dissociation cross section O-16(alpha,gamma)C-12, which is the time reversed reaction to C-12(alpha,gamma)O-16. With this indirect method, we aim to improve on the accuracy of the experimental data at lower energies than measured so far. The expected low cross section for the Coulomb dissociation reaction and close magnetic rigidity of beam and fragments demand a high precision measurement. Hence, new detector systems were built and radical changes to the (RB)-B-3 setup were necessary to cope with the high-intensity O-16 beam. All tracking detectors were designed to let the unreacted O-16 ions pass, while detecting the C-12 and He-4

Ruxolitinib for Glucocorticoid-Refractory Acute Graft-versus-Host Disease

BACKGROUND: Acute graft-versus-host disease (GVHD) remains a major limitation of allogeneic stem-cell transplantation; not all patients have a response to standard glucocorticoid treatment. In a phase 2 trial, ruxolitinib, a selective Janus kinase (JAK1 and JAK2) inhibitor, showed potential efficacy in patients with glucocorticoid-refractory acute GVHD. METHODS: We conducted a multicenter, randomized, open-label, phase 3 trial comparing the efficacy and safety of oral ruxolitinib (10 mg twice daily) with the investigator's choice of therapy from a list of nine commonly used options (control) in patients 12 years of age or older who had glucocorticoid-refractory acute GVHD after allogeneic stem-cell transplantation. The primary end point was overall response (complete response or partial response) at day 28. The key secondary end point was durable overall response at day 56. RESULTS: A total of 309 patients underwent randomization; 154 patients were assigned to the ruxolitinib group and 155 to the control group. Overall response at day 28 was higher in the ruxolitinib group than in the control group (62% [96 patients] vs. 39% [61]; odds ratio, 2.64; 95% confidence interval [CI], 1.65 to 4.22; P<0.001). Durable overall response at day 56 was higher in the ruxolitinib group than in the control group (40% [61 patients] vs. 22% [34]; odds ratio, 2.38; 95% CI, 1.43 to 3.94; P<0.001). The estimated cumulative incidence of loss of response at 6 months was 10% in the ruxolitinib group and 39% in the control group. The median failure-free survival was considerably longer with ruxolitinib than with control (5.0 months vs. 1.0 month; hazard ratio for relapse or progression of hematologic disease, non-relapse-related death, or addition of new systemic therapy for acute GVHD, 0.46; 95% CI, 0.35 to 0.60). The median overall survival was 11.1 months in the ruxolitinib group and 6.5 months in the control group (hazard ratio for death, 0.83; 95% CI, 0.60 to 1.15). The most common adverse events up to day 28 were thrombocytopenia (in 50 of 152 patients [33%] in the ruxolitinib group and 27 of 150 [18%] in the control group), anemia (in 46 [30%] and 42 [28%], respectively), and cytomegalovirus infection (in 39 [26%] and 31 [21%]). CONCLUSIONS: Ruxolitinib therapy led to significant improvements in efficacy outcomes, with a higher incidence of thrombocytopenia, the most frequent toxic effect, than that observed with control therapy