NCBI’s virus discovery codeathon: building “FIVE” —the Federated Index of Viral Experiments API index

Viruses represent important test cases for data federation due to their genome size and the rapid increase in sequence data in publicly available databases. However, some consequences of previously decentralized (unfederated) data are lack of consensus or comparisons between feature annotations. Unifying or displaying alternative annotations should be a priority both for communities with robust entry representation and for nascent communities with burgeoning data sources. To this end, during this three-day continuation of the Virus Hunting Toolkit codeathon series (VHT-2), a new integrated and federated viral index was elaborated. This Federated Index of Viral Experiments (FIVE) integrates pre-existing and novel functional and taxonomy annotations and virus–host pairings. Variability in the context of viral genomic diversity is often overlooked in virus databases. As a proof-of-concept, FIVE was the first attempt to include viral genome variation for HIV, the most well-studied human pathogen, through viral genome diversity graphs. As per the publication of this manuscript, FIVE is the first implementation of a virus-specific federated index of such scope. FIVE is coded in BigQuery for optimal access of large quantities of data and is publicly accessible. Many projects of database or index federation fail to provide easier alternatives to access or query information. To this end, a Python API query system was developed to enhance the accessibility of FIVE

A material experiment for small satellites to characterise the behaviour of carbon nanotubes in space - development and ground validation

Over the last years, Carbon Nanotubes (CNT) drew interdisciplinary attention. Regarding space technologies a variety of potential applications were proposed and investigated. However, no complex data on the behaviour and degradation process of carbon nanotubes under space environment exist. Therefore, it is necessary to investigate the performance of these new materials in space environment and to revaluate the application potential of CNTs in space technologies. Hence, CiREX (Carbon Nanotubes – Resistance Experiment) was developed as a part of a student project. It is a small and compact experiment, which is designed for CubeSat class space satellites. These are a class of nanosatellites with a standardized size and shape. The CiREX design, electrical measurements and the satellites interfaces will be discussed in detail. CiREX is the first in-situ space material experiment for CNTs. To evaluate the data obtained from CiREX, ground validation tests are mandatory. As part of an extensive test series the behaviour of CNTs under solar ultra violet light (UV) and vacuum ultraviolet light (VUV) was examined. Single-walled carbon nanotubes (SWNT), multi-walled carbon nanotubes (MWNT) and MWNT/resin composite (ME) were exposed to different light sources. After the exposure, the defect density was investigated with Raman spectroscopy. There is a clear indication that UV and VUV light can increase the defect density of untreated CNTs and influence the electrical behaviour