96 research outputs found
A multiscale framework for disentangling the roles of evenness, density, and aggregation on diversity gradients
Ecology published by Wiley Periodicals LLC on behalf of Ecological Society of America Disentangling the drivers of diversity gradients can be challenging. The Measurement of Biodiversity (MoB) framework decomposes scale-dependent changes in species diversity into three components of community structure: species abundance distribution (SAD), total community abundance, and within-species spatial aggregation. Here we extend MoB from categorical treatment comparisons to quantify variation along continuous geographic or environmental gradients. Our approach requires sites along a gradient, each consisting of georeferenced plots of abundance-based species composition data. We demonstrate our method using a case study of ants sampled along an elevational gradient of 28 sites in a mixed deciduous forest of the Great Smoky Mountains National Park, USA. MoB analysis revealed that decreases in ant species richness along the elevational gradient were associated with decreasing evenness and total number of species, which counteracted the modest increase in richness associated with decreasing spatial aggregation along the gradient. Total community abundance had a negligible effect on richness at all but the finest spatial grains, SAD effects increased in importance with sampling effort, and the aggregation effect had the strongest effect at coarser spatial grains. These results do not support the more-individuals hypothesis, but they are consistent with a hypothesis of stronger environmental filtering at coarser spatial grains. Our extension of MoB has the potential to elucidate how components of community structure contribute to changes in diversity along environmental gradients and should be useful for a variety of assemblage-level data collected along gradients
Measurement of Biodiversity (MoB): A method to separate the scale-dependent effects of species abundance distribution, density, and aggregation on diversity change
Little consensus has emerged regarding how proximate and ultimate drivers such as productivity, disturbance and temperature may affect species richness and other aspects of biodiversity. Part of the confusion is that most studies examine species richness at a single spatial scale and ignore how the underlying components of species richness can vary with spatial scale. We provide an approach for the measurement of biodiversity that decomposes changes in species rarefaction curves into proximate components attributed to: (a) the species abundance distribution, (b) density of individuals and (c) the spatial arrangement of individuals. We decompose species richness by comparing spatial and nonspatial sample- and individual-based species rarefaction curves that differentially capture the influence of these components to estimate the relative importance of each in driving patterns of species richness change. We tested the validity of our method on simulated data, and we demonstrate it on empirical data on plant species richness in invaded and uninvaded woodlands. We integrated these methods into a new r package (mobr). The metrics that mobr provides will allow ecologists to move beyond comparisons of species richness in response to ecological drivers at a single spatial scale toward a dissection of the proximate components that determine species richness across scales
Si3AlP: A new promising material for solar cell absorber
First-principles calculations are performed to study the structural and
optoelectronic properties of the newly synthesized nonisovalent and
lattice-matched (Si2)0.6(AlP)0.4 alloy [T. Watkins et al., J. Am. Chem. Soc.
2011, 133, 16212.] We find that the ordered CC-Si3AlP with a basic unit of one
P atom surrounded by three Si atoms and one Al atom is the most stable one
within the experimentally observed unit cell.1 Si3AlP has a larger fundamental
band gap and a smaller direct band gap than Si, thus it has much higher
absorption in the visible light region. The calculated properties of Si3AlP
suggest that it is a promising candidate for improving the performance of the
existing Si-based solar cells. The understanding on the stability and band
structure engineering obtained in this study is general and can be applied for
future study of other nonisovalent and lattice-matched semiconductor alloys
β-diversity scaling patterns are consistent across metrics and taxa
We thank the University of St Andrews Bioinformatics Unit (Wellcome Trust ISSF grant 105621/Z/14/Z). L.H.A.was supported by Fundação para a Ciência e Tecnologia, Portugal (POPH/FSE SFRH/BD/90469/2012), A.E.M. by the ERC BioTIME (250189) and BioCHANGE (727440), and B.J.M. by USDA Hatch grant to MAFES #1011538 and NSF ABI grant #1660000. The BioTIME database was funded by ERC AdG BioTIME (250189) and ERC PoC BioCHANGE (727440).β‐diversity (variation in community composition) is a fundamental component of biodiversity, with implications for macroecology, community ecology and conservation. However, its scaling properties are poorly understood. Here, we systematically assessed the spatial scaling of β‐diversity using 12 empirical large‐scale datasets including different taxonomic groups, by examining two conceptual types of β‐diversity and explicitly considering the turnover and nestedness components. We found highly consistent patterns across datasets. Multiple‐site β‐diversity (i.e. variation across multiple sites) scaling curves were remarkably consistent, with β‐diversity decreasing with sampled area according to a power law. For pairwise dissimilarities, the rates of increase of dissimilarity with geographic distance remained largely constant across scales, while grain size (or scale level) had a stronger effect on overall dissimilarity. In both analyses, turnover was the main contributor to β‐diversity, following total β‐diversity patterns closely, while the nestedness component was largely insensitive to scale changes. Our results highlight the importance of integrating both inter‐ and intraspecific aggregation patterns across spatial scales, which underpin substantial differences in community structure from local to regional scales.PostprintPeer reviewe
Mediterranean marine protected areas have higher biodiversity via increased evenness, not abundance
1. Protected areas are central to biodiversity conservation. For marine fish, marine protected areas (MPAs) often harbour more individuals, especially of species targeted by fisheries. But precise pathways of biodiversity change remain unclear. For example, how local-scale responses combine to affect regional biodiversity, important for managing spatial networks of MPAs, is not well known. Protection potentially influences three components of fish assemblages that determine how species accumulate with sampling effort and spatial scale: the total number of individuals, the relative abundance of species and within-species aggregation. Here, we examined the contributions of each component to species richness changes inside MPAs as a function of spatial scale. 2. Using standardized underwater visual survey data, we measured the abundance and species richness of reef fishes in 43 protected and 41 fished sites in the Mediterranean Sea. 3. At both local and regional scales, increased species evenness caused by added common species in MPAs compared to fished sites was the most important proximate driver of higher diversity. 4. Site-to-site variation in the composition (i.e. β-diversity) of common species was also higher among protected sites, and depended on sensitivity to exploitation. There were more abundant exploited species at regional scales than at local scales, reflecting a tendency for different protected sites to harbour different exploited species. In contrast, fewer abundant unexploited species were found at the regional scale than at the local scale, meaning that relative abundances at the regional scale were less even than at the local scale. 5. Synthesis and applications. Although marine protected areas (MPAs) are known to strongly influence fish community abundance and biomass, we found that changes to the relative abundance of species (i.e. increased evenness) dominated the biodiversity response to protection. MPAs had more relatively common species, which in turn led to higher diversity for a given sampling effort. Moreover, higher β-diversity of common species meant that local-scale responses were magnified at the regional scale due to site-to-site variation inside protected areas for exploited species. Regional conservation efforts can be strengthened by examining how multiple components of biodiversity respond to protection across spatial scales
Some anisotropic universes in the presence of imperfect fluid coupling with spatial curvature
We consider Bianchi VI spacetime, which also can be reduced to Bianchi types
VI0-V-III-I. We initially consider the most general form of the energy-momentum
tensor which yields anisotropic stress and heat flow. We then derive an
energy-momentum tensor that couples with the spatial curvature in a way so as
to cancel out the terms that arise due to the spatial curvature in the
evolution equations of the Einstein field equations. We obtain exact solutions
for the universes indefinetly expanding with constant mean deceleration
parameter. The solutions are beriefly discussed for each Bianchi type. The
dynamics of the models and fluid are examined briefly, and the models that can
approach to isotropy are determined. We conclude that even if the observed
universe is almost isotropic, this does not necessarily imply the isotropy of
the fluid (e.g., dark energy) affecting the evolution of the universe within
the context of general relativity.Comment: 17 pages, no figures; to appear in International Journal of
Theoretical Physics; in this version (which is more concise) an equation
added, some references updated and adde
Nr6a1 controls Hox expression dynamics and is a master regulator of vertebrate trunk development
The vertebrate main-body axis is laid down during embryonic stages in an anterior-to-posterior (head-to-tail) direction, driven and supplied by posteriorly located progenitors. Whilst posterior expansion and segmentation appears broadly uniform along the axis, there is developmental and evolutionary support for at least two discrete modules controlling processes within different axial regions: a trunk and a tail module. Here, we identify Nuclear receptor subfamily 6 group A member 1 (Nr6a1) as a master regulator of trunk development in the mouse. Specifically, Nr6a1 was found to control vertebral number and segmentation of the trunk region, autonomously from other axial regions. Moreover, Nr6a1 was essential for the timely progression of Hox signatures, and neural versus mesodermal cell fate choice, within axial progenitors. Collectively, Nr6a1 has an axially-restricted role in all major cellular and tissue-level events required for vertebral column formation, supporting the view that changes in Nr6a1 levels may underlie evolutionary changes in axial formulae.Yi-Cheng Chang, Jan Manent, Jan Schroeder, Siew Fen Lisa Wong, Gabriel M. Hauswirth, Natalia A. Shylo, Emma L. Moore, Annita Achilleos, Victoria Garside, Jose M. Polo, Paul Trainor, Edwina McGlin
Synthesis reveals approximately balanced biotic differentiation and homogenization
This work was supported by the German Research Foundation (FZT 118, to S.A.B., T.E., A.S., R.v.K., W.-B.X., and J.M.C.) and ERC GA 101044975 and the Leverhulme Centre for Anthropocene Biodiversity (to M.D.). This work was also supported by the German Research Foundation (DFG) project “Establishment of the National Research Data Infrastructure (NFDI)” in the consortium NFDI4Biodiversity (project number 442032008) (to T.E.), European Union Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement no. 894644 (to I.S.M.), USDA Hatch grant MAFES #1011538 and NSF EPSCOR Track II grant #2019470 (to B.M.), and NSF Track II grant #2019470 (to N.J.G.).It is commonly thought that the biodiversity crisis includes widespread declines in the spatial variation of species composition, called biotic homogenization. Using a typology relating homogenization and differentiation to local and regional diversity changes, we synthesize patterns across 461 metacommunities surveyed for 10 to 91 years, and 64 species checklists (13 to 500+ years). Across all datasets, we found that no change was the most common outcome, but with many instances of homogenization and differentiation. A weak homogenizing trend of a 0.3% increase in species shared among communities/year on average was driven by increased numbers of widespread (high occupancy) species and strongly associated with checklist data that have longer durations and large spatial scales. At smaller spatial and temporal scales, we show that homogenization and differentiation can be driven by changes in the number and spatial distributions of both rare and common species. The multiscale perspective introduced here can help identify scale-dependent drivers underpinning biotic differentiation and homogenization.Peer reviewe
Supplementary information files for Regional occupancy increases for widespread species but decreases for narrowly distributed species in metacommunity time series
Supplementary files for article Regional occupancy increases for widespread species but decreases for narrowly distributed species in metacommunity time series
While human activities are known to elicit rapid turnover in species composition through time, the properties of the species that increase or decrease their spatial occupancy underlying this turnover are less clear. Here, we used an extensive dataset of 238 metacommunity time series of multiple taxa spread across the globe to evaluate whether species that are more widespread (large-ranged species) differed in how they changed their site occupancy over the10-90 years the metacommunities were monitored relative to species that are more narrowly distributed (small-ranged species). We found that on average, large-ranged species tended to increase in occupancy through time, whereas small-ranged species tended to decrease. These relationships were stronger in marine than in terrestrial and freshwater realms. However, in terrestrial regions, the directional changes in occupancy were less extreme in protected areas.
Our findings provide evidence for systematic decreases in occupancy of small-ranged species, and that habitat protection could mitigate these losses in the face of environmental change.</p
Biological and geophysical feedbacks with fire in the Earth system
Roughly 3% of the Earth’s land surface burns annually, representing a critical exchange of energy and
matter between the land and atmosphere via combustion. Fires range from slow smouldering peat
fires, to low-intensity surface fires, to intense crown fires, depending on vegetation structure, fuel
moisture, prevailing climate, and weather conditions. While the links between biogeochemistry,
climate and fire are widely studied within Earth system science, these relationships are also mediated
by fuels—namely plants and their litter—that are the product of evolutionary and ecological
processes. Fire is a powerful selective force and, over their evolutionary history, plants have evolved
traits that both tolerate and promote fire numerous times and across diverse clades. Here we outline a
conceptual framework of how plant traits determine the flammability of ecosystems and interact with
climate and weather to influence fire regimes. We explore how these evolutionary and ecological
processes scale to impact biogeochemical and Earth system processes. Finally, we outline several
research challenges that, when resolved, will improve our understanding of the role of plant evolution
in mediating the fire feedbacks driving Earth system processes. Understanding current patterns of fire
and vegetation, as well as patterns of fire over geological time, requires research that incorporates
evolutionary biology, ecology, biogeography, and the biogeosciences
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