3,033 research outputs found

    Extensive horizontal gene transfer during Staphylococcus aureus co-colonization in vivo.

    Get PDF
    Staphylococcus aureus is a commensal and major pathogen of humans and animals. Comparative genomics of S. aureus populations suggests that colonization of different host species is associated with carriage of mobile genetic elements (MGE), particularly bacteriophages and plasmids capable of encoding virulence, resistance, and immune evasion pathways. Antimicrobial-resistant S. aureus of livestock are a potential zoonotic threat to human health if they adapt to colonize humans efficiently. We utilized the technique of experimental evolution and co-colonized gnotobiotic piglets with both human- and pig-associated variants of the lineage clonal complex 398, and investigated growth and genetic changes over 16 days using whole genome sequencing. The human isolate survived co-colonization on piglets more efficiently than in vitro. During co-colonization, transfer of MGE from the pig to the human isolate was detected within 4 h. Extensive and repeated transfer of two bacteriophages and three plasmids resulted in colonization with isolates carrying a wide variety of mobilomes. Whole genome sequencing of progeny bacteria revealed no acquisition of core genome polymorphisms, highlighting the importance of MGE. Staphylococcus aureus bacteriophage recombination and integration into novel sites was detected experimentally for the first time. During colonization, clones coexisted and diversified rather than a single variant dominating. Unexpectedly, each piglet carried unique populations of bacterial variants, suggesting limited transmission of bacteria between piglets once colonized. Our data show that horizontal gene transfer occurs at very high frequency in vivo and significantly higher than that detectable in vitro

    On-sky wide field adaptive optics correction using multiple laser guide stars at the MMT

    Get PDF
    We describe results from the first astronomical adaptive optics system to use multiple laser guide stars, located at the 6.5-m MMT telescope in Arizona. Its initial operational mode, ground-layer adaptive optics (GLAO), provides uniform stellar wavefront correction within the 2 arc minute diameter laser beacon constellation, reducing the stellar image widths by as much as 53%, from 0.70 to 0.33 arc seconds at lambda = 2.14 microns. GLAO is achieved by applying a correction to the telescope's adaptive secondary mirror that is an average of wavefront measurements from five laser beacons supplemented with image motion from a faint stellar source. Optimization of the adaptive optics system in subsequent commissioning runs will further improve correction performance where it is predicted to deliver 0.1 to 0.2 arc second resolution in the near-infrared during a majority of seeing conditions.Comment: 13 pages, 1 table, 7 figures. Accepted for publication in Astrophysical Journal. Expected March 200

    Ship traffic connects Antarctica's fragile coasts to worldwide ecosystems.

    Get PDF
    Antarctica, an isolated and long considered pristine wilderness, is becoming increasingly exposed to the negative effects of ship-borne human activity, and especially the introduction of invasive species. Here, we provide a comprehensive quantitative analysis of ship movements into Antarctic waters and a spatially explicit assessment of introduction risk for nonnative marine species in all Antarctic waters. We show that vessels traverse Antarctica's isolating natural barriers, connecting it directly via an extensive network of ship activity to all global regions, especially South Atlantic and European ports. Ship visits are more than seven times higher to the Antarctic Peninsula (especially east of Anvers Island) and the South Shetland Islands than elsewhere around Antarctica, together accounting for 88% of visits to Southern Ocean ecoregions. Contrary to expectations, we show that while the five recognized "Antarctic Gateway cities" are important last ports of call, especially for research and tourism vessels, an additional 53 ports had vessels directly departing to Antarctica from 2014 to 2018. We identify ports outside Antarctica where biosecurity interventions could be most effectively implemented and the most vulnerable Antarctic locations where monitoring programs for high-risk invaders should be established

    Prevalence of true vein graft aneurysms: Implications for aneurysm pathogenesis

    Get PDF
    AbstractBackground: Circumstantial evidence suggests that arterial aneurysms have a different cause than atherosclerosis and may form part of a generalized dilating diathesis. The aim of this study was to compare the rates of spontaneous aneurysm formation in vein grafts performed either for popliteal aneurysms or for occlusive disease. The hypothesis was that if arterial aneurysms form a part of a systemic process, then the rates of vein graft aneurysms should be higher for patients with popliteal aneurysms than for patients with lower limb ischemia caused by atherosclerosis. Methods: Infrainguinal vein grafting procedures performed from 1990 to 1995 were entered into a prospective audit and graft surveillance program. Aneurysmal change was defined as a focal increase in the graft diameter of 1.5 cm or greater, excluding false aneurysms and dilatations after graft angioplasty. Results: During the study period, 221 grafting procedures were performed in 200 patients with occlusive disease and 24 grafting procedures were performed in 21 patients with popliteal aneurysms. Graft surveillance revealed spontaneous aneurysm formation in 10 of the 24 bypass grafts (42%) for popliteal aneurysms but in only 4 of the 221 grafting procedures (2%) that were performed for chronic lower limb ischemia. Conclusion:This study provides further evidence that aneurysmal disease is a systemic process, and this finding has clinical implications for the treatment of popliteal aneurysms. (J Vasc Surg 1999;29:403-8.

    Anthropology and the Irish Encounter

    Get PDF
    In their discussion of ancestral versus contemporary anthropology in Ireland, Keith Egan and Fiona Murphy (this issue) do not draw a parallel distinction, quite probably deliberately, between “metropolitan” and “native” anthropologies. Positing a category of “native anthropology” opens up an explosive set of issues about the claim to be “native”—all the more combustible in a place that has known settler colonialism since the 12th century, tidalwaves of out-migration (and consequently a vast and tuned-in diaspora) due to famine in the 19th and economic stagnation in the 20th century, and a total demographic makeover through in-migration in the past two decades. Nonetheless, even though they do not resort to this distinction, Egan and Murphy are likely to agree that they are describing an Irish version of a quandary that is all too familiar to native anthropologists from marginal anthropological traditions, predominantly in the postcolonial world: namely, what is to be done when the acknowledged gold standard of metropolitan ethnographic writing renders your home place in a way that is unrecognizable to you

    On preparing for the great gift of community that climate disasters can give us

    Get PDF
    There is a widespread (if rarely voiced) assumption, among those who dare to understand the future which climate chaos is likely to yield, that civility will give way and a Hobbesian war of all against all will be unleashed. Thankfully, this assumption is highly questionable. The field of ‘Disaster Studies’, as shown in Rebecca Solnit’s A Paradise Built in Hell, makes clear that it is at least as likely that, tested in the crucible of back-to-back disasters, humanity will rise to the challenge, and we will find ourselves manifesting a truer humanity than we currently think ourselves to have. Thus the post-sustainability world will offer us a tremendous gift amidst the carnage. But how well we realise this gift depends on our preparing the way for it. In order to prepare, the fantasy of sustainable development needs to be jettisoned, along with the bargain-making mentality underpinning it. Instead, the inter-personal virtues of generosity, fraternity and care-taking need fostering. One role a philosophically informed deep reframing can play in this process of virtuous preparation for disaster is in helping people to understand that, in order to care for their children, they need to care for their children in turn, and so on, ad infinitum

    Design as conversation with digital materials

    Get PDF
    This paper explores Donald Schön's concept of design as a conversation with materials, in the context of designing digital systems. It proposes material utterance as a central event in designing. A material utterance is a situated communication act that depends on the particularities of speaker, audience, material and genre. The paper argues that, if digital designing differs from other forms of designing, then accounts for such differences must be sought by understanding the material properties of digital systems and the genres of practice that surround their use. Perspectives from human-computer interaction (HCI) and the psychology of programming are used to examine how such an understanding might be constructed.</p

    Genomic insights into the rapid emergence and evolution of MDR in Staphylococcus pseudintermedius.

    Get PDF
    OBJECTIVES: MDR methicillin-resistant Staphylococcus pseudintermedius (MRSP) strains have emerged rapidly as major canine pathogens and present serious treatment issues and concerns to public health due to their, albeit low, zoonotic potential. A further understanding of the genetics of resistance arising from a broadly susceptible background of S. pseudintermedius is needed. METHODS: We sequenced the genomes of 12 S. pseudintermedius isolates of varied STs and resistance phenotypes. RESULTS: Nine distinct clonal lineages had acquired either staphylococcal cassette chromosome (SCC) mec elements and/or Tn5405-like elements carrying up to five resistance genes [aphA3, sat, aadE, erm(B), dfrG] to generate MRSP, MDR methicillin-susceptible S. pseudintermedius and MDR MRSP populations. The most successful and clinically problematic MDR MRSP clones, ST68 SCCmecV(T) and ST71 SCCmecII-III, have further accumulated mutations in gyrA and grlA conferring resistance to fluoroquinolones. The carriage of additional mobile genetic elements (MGEs) was highly variable, suggesting that horizontal gene transfer is frequent in S. pseudintermedius populations. CONCLUSIONS: Importantly, the data suggest that MDR MRSP evolved rapidly by the acquisition of a very limited number of MGEs and mutations, and that the use of many classes of antimicrobials may co-select for the spread and emergence of MDR and XDR strains. Antimicrobial stewardship will need to be comprehensive, encompassing human medicine and veterinary disciplines to successfully preserve antimicrobial efficacy
    corecore