Increasing microbial carbon use efficiency with warming predicts soil heterotrophic respiration globally

The degree to which climate warming will stimulate soil organic carbon (SOC) losses via heterotrophic respiration remains uncertain, in part because different or even opposite microbial physiology and temperature relationships have been proposed in SOC models. We incorporated competing microbial carbon use efficiency (CUE)–mean annual temperature (MAT) and enzyme kinetic–MAT relationships into SOC models, and compared the simulated mass‐specific soil heterotrophic respiration rates with multiple published datasets of measured respiration. The measured data included 110 dryland soils globally distributed and two continental to global‐scale cross‐biome datasets. Model–data comparisons suggested that a positive CUE–MAT relationship best predicts the measured mass‐specific soil heterotrophic respiration rates in soils distributed globally. These results are robust when considering models of increasing complexity and competing mechanisms driving soil heterotrophic respiration–MAT relationships (e.g., carbon substrate availability). Our findings suggest that a warmer climate selects for microbial communities with higher CUE, as opposed to the often hypothesized reductions in CUE by warming based on soil laboratory assays. Our results help to build the impetus for, and confidence in, including microbial mechanisms in soil biogeochemical models used to forecast changes in global soil carbon stocks in response to warming.J.‐S.Y. was funded by the Second Tibetan Plateau Scientific Expedition and Research Program (2019QZKK0305) and the Fundamental Research Funds for the Central Universities (lzujbky‐2019‐kb36). This research was supported by the European Research Council (ERC Grant Agreements 242658 [BIOCOM] and 647038 [BIODESERT]). M. D. is supported by a FPU fellowship from the Spanish Ministry of Education, Culture and Sports (Ref. FPU‐15/00392). P.G.P. acknowledges the Spanish Ministry of Economy and Competitiveness for financial support via the Juan de la Cierva Incorporación Program (IJCI‐2014‐20058)

Temperature Increases Soil Respiration Across Ecosystem Types and Soil Development, But Soil Properties Determine the Magnitude of This Effect

Soil carbon losses to the atmosphere, via soil heterotrophic respiration, are expected to increase in response to global warming, resulting in a positive carbon-climate feedback. Despite the well-known suite of abiotic and biotic factors controlling soil respiration, much less is known about how the magnitude of soil respiration responses to temperature changes over soil development and across contrasting soil properties. Here we investigated the role of soil development stage and soil properties in driving the responses of soil heterotrophic respiration to temperature. We incubated soils from eight chronosequences ranging in soil age from hundreds to million years, and encompassing a wide range of vegetation types, climatic conditions and chronosequences origins, at three assay temperatures (5 °C, 15 °C and 25 °C). We found a consistent positive effect of assay temperature on soil respiration rates across the eight chronosequences evaluated. However, chronosequences parent materials (sedimentary/sand dunes or volcanic) and soil properties (pH, phosphorus content and microbial biomass) determined the magnitude of this temperature effect. Finally, we observed a positive effect of soil development stage on soil respiration across chronosequences that did not alter the magnitude of assay temperature effects. Our work reveals that key soil properties alter the magnitude of the positive effect of temperature on soil respiration found across ecosystem types and soil development stages. This information is essential to better understand the magnitude of the carbon-climate feedback and thus to establish accurate greenhouse gas emission targets.This research received funding from the European Union’s Horizon 2020 research and innovation program under Marie Sklodowska-Curie Grant Agreement 702057. M.D. was supported by an FPU fellowship from the Spanish Ministry of Education, Culture and Sports (FPU-15/00392). M.D. and F.T.M. are supported by the European Research Council (Consolidator Grant Agreement No 647038, BIODESERT). M.D-B. is supported by a Large Research Grant from the British Ecological Society (grant agreement n° LRA17\1193, MUSGONET). F.T.M and M.D-B. acknowledge support from the Spanish Ministry (project CGL2017-88124-R). PGP and M.D-B. are supported by a Ramón y Cajal grant from the Spanish Ministry of Science and Innovation (RYC2018-024766-I and RYC2018-025483-I, respectively). F.T.M. acknowledges support from the Generalitat Valenciana (CIDEGENT/2018/041)

Differential responses of carbon-degrading enzyme activities to warming: implications for soil respiration

Extracellular enzymes catalyze rate‐limiting steps in soil organic matter decomposi-tion, and their activities (EEAs) play a key role in determining soil respiration (SR).Both EEAs and SR are highly sensitive to temperature, but their responses to cli-mate warming remain poorly understood. Here, we present a meta‐analysis on theresponse of soil cellulase and ligninase activities and SR to warming, synthesizingdata from 56 studies. We found that warming significantly enhanced ligninase activ-ity by 21.4% but had no effect on cellulase activity. Increases in ligninase activitywere positively correlated with changes in SR, while no such relationship was foundfor cellulase. The warming response of ligninase activity was more closely related tothe responses of SR than a wide range of environmental and experimental method-ological factors. Furthermore, warming effects on ligninase activity increased withexperiment duration. These results suggest that soil microorganisms sustain long‐term increases in SR with warming by gradually increasing the degradation of therecalcitrant carbon pool

Soils in warmer and less developed countries have less micronutrients globally

Soil micronutrients are capital for the delivery of ecosystem functioning and food provision worldwide. Yet, despite their importance, the global biogeography and ecological drivers of soil micronutrients remain virtually unknown, limiting our capacity to anticipate abrupt unexpected changes in soil micronutrients in the face of climate change. Here, we analyzed >1300 topsoil samples to examine the global distribution of six metallic micronutrients (Cu, Fe, Mn, Zn, Co and Ni) across all continents, climates and vegetation types. We found that warmer arid and tropical ecosystems, present in the least developed countries, sustain the lowest contents of multiple soil micronutrients. We further provide evidence that temperature increases may potentially result in abrupt and simultaneous reductions in the content of multiple soil micronutrients when a temperature threshold of 12–14°C is crossed, which may be occurring on 3% of the planet over the next century. Altogether, our findings provide fundamental understanding of the global distribution of soil micronutrients, with direct implications for the maintenance of ecosystem functioning, rangeland management and food production in the warmest and poorest regions of the planet.The sampling included in this study were supported by the European Research Council (ERC) grant 647038 (BIODESERT), the BES grant agreement No. LRB17\1019 (MUSGONET) and the Marie Skłodowska-Curie grant agreement 702057 (CLIMIFUN). We would like to thank the researchers originally involved in the BIODESERT, CLIMIFUN and MUSGONET projects for their help with samplings. E.M.-J. acknowledges the Humboldt Foundation for supporting his research stay in Germany (Fellowship for Experienced Researchers) and a project from the Spanish Ministry of Science and Innovation (PID2020-116578RB-I00). M.D.-B. is supported by a Ramón y Cajal grant (RYC2018-025483-I), a project from the Spanish Ministry of Science and Innovation (PID2020-115813RA-I00) and a project PAIDI 2020 from the Junta de Andalucía (P20_00879). E.G. is supported by the Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital de la Generalitat Valenciana, and the European Social Fund grant APOSTD/2021/188 and European Research Council (ERC) grant 647038. F.T.M. is supported by European Research Council (ERC) grant 647038 and Generalitat Valenciana grant CIDEGENT/2018/041. M.D. and T.W.C. were funded by the Marc R. Benioff Revocable Trust and in collaboration with the World Economic Forum. This article is part of the contract between ETH Zurich and University of Alicante “Mapping terrestrial ecosystem structure at the global scale”. R.O.H. is supported by the Ramón y Cajal program from the MICINN (RYC-2017 22032), a PAIDI 2020 project from the Junta de Andalucía (Ref. 20_00323) and a project from the Spanish Ministry of Science and Innovation (PID2019-106004RA-I00/AEI/10.13039/501100011033). Authors acknowledge support by the Open Access Publication Initiative of Freie Universität Berlin. Open Access funding enabled and organized by Projekt DEAL

Soils in warmer and less developed countries have less micronutrients globally

Soil micronutrients are capital for the delivery of ecosystem functioning and food provision worldwide. Yet, despite their importance, the global biogeography and ecological drivers of soil micronutrients remain virtually unknown, limiting our capacity to anticipate abrupt unexpected changes in soil micronutrients in the face of climate change. Here, we analyzed >1300 topsoil samples to examine the global distribution of six metallic micronutrients (Cu, Fe, Mn, Zn, Co and Ni) across all continents, climates and vegetation types. We found that warmer arid and tropical ecosystems, present in the least developed countries, sustain the lowest contents of multiple soil micronutrients. We further provide evidence that temperature increases may potentially result in abrupt and simultaneous reductions in the content of multiple soil micronutrients when a temperature threshold of 12–14°C is crossed, which may be occurring on 3% of the planet over the next century. Altogether, our findings provide fundamental understanding of the global distribution of soil micronutrients, with direct implications for the maintenance of ecosystem functioning, rangeland management and food production in the warmest and poorest regions of the planet

Arabidopsis immune responses triggered by cellulose‐ and mixed‐linked glucan‐derived oligosaccharides require a group ofleucine‐rich repeat malectinreceptor kinases

[EN] The plant immune system perceives a diversity of carbohydrate ligands from plant and microbial cell walls through the extracellular ectodomains (ECDs) of pattern recognition receptors (PRRs), which activate pattern-triggered immunity (PTI). Among these ligands are oligosaccharides derived from mixed-linked b- 1,3/b-1,4-glucans (MLGs; e.g. b-1,4-D-(Glc)2-b-1,3-D-Glc, MLG43) and cellulose (e.g. b-1,4-D-(Glc)3, CEL3). The mechanisms behind carbohydrate perception in plants are poorly characterized except for fungal chitin oligosaccharides (e.g. b-1,4-D-(GlcNAc)6, CHI6), which involve several receptor kinase proteins (RKs) with LysM-ECDs. Here, we describe the isolation and characterization of Arabidopsis thaliana mutants impaired in glycan perception (igp) that are defective in PTI activation mediated by MLG43 and CEL3, but not by CHI6. igp1–igp4 are altered in three RKs – AT1G56145 (IGP1), AT1G56130 (IGP2/IGP3) and AT1G56140 (IGP4) – with leucine-rich-repeat (LRR) and malectin (MAL) domains in their ECDs. igp1 harbors point mutation E906K and igp2 and igp3 harbor point mutation G773E in their kinase domains, whereas igp4 is a T-DNA insertional loss-of-function mutant. Notably, isothermal titration calorimetry (ITC) assays with purified ECDRKs of IGP1 and IGP3 showed that IGP1 binds with high affinity to CEL3 (with dissociation constant KD = 1.19 0.03 lM) and cellopentaose (KD = 1.40 0.01 lM), but not to MLG43, supporting its function as a plant PRR for cellulose-derived oligosaccharides. Our data suggest that these LRR-MAL RKs are components of a recognition mechanism for both cellulose- and MLG-derived oligosaccharide perception and downstream PTI activation in Arabidopsis.SIGrant PID-2021-126006OB-100 from the Spanish Ministry of Science and Innovation to AMThis work has also been financially supported by the ‘Severo Ochoa (SO) Programme for Centres of Excellence in R&D’ from the Agencia Estatal de Investigaci on (AEI) of Spain (grants SEV-2016-0672 (2017-2021) and CEX2020-000999-S (2022-2025) to the CBGP). In the frame of the SO program, HM and PF-C were supported with postdoctoral fellowships. MM-D, DJB and DR were recipients of PhD Fellows PRE2019-088120 and PRE2019-091276 (SEV-2016- 0672) from AEI, and IND2017/BIO-7800 from Madrid Regional Government, respectively. Research in the lab of JS was financially supported by the University of Lausanne, the European Research Council (ERC) (grant agreement no. 716358) and the Swiss National Science Foundation (grant no. 310030_204526)

Contrasting mechanisms underlie short‐ and longer‐term soil respiration responses to experimental warming in a dryland ecosystem

Soil carbon losses to the atmosphere through soil respiration are expected to rise with ongoing temperature increases, but available evidence from mesic biomes suggests that such response disappears after a few years of experimental warming. However, there is lack of empirical basis for these temporal dynamics in soil respiration responses, and for the mechanisms underlying them, in drylands, which collectively form the largest biome on Earth and store 32% of the global soil organic carbon pool. We coupled data from a 10 year warming experiment in a biocrust‐dominated dryland ecosystem with laboratory incubations to confront 0–2 years (short‐term hereafter) versus 8–10 years (longer‐term hereafter) soil respiration responses to warming. Our results showed that increased soil respiration rates with short‐term warming observed in areas with high biocrust cover returned to control levels in the longer‐term. Warming‐induced increases in soil temperature were the main drivers of the short‐term soil respiration responses, whereas longer‐term soil respiration responses to warming were primarily driven by thermal acclimation and warming‐induced reductions in biocrust cover. Our results highlight the importance of evaluating short‐ and longer‐term soil respiration responses to warming as a mean to reduce the uncertainty in predicting the soil carbon–climate feedback in drylands.This research was funded by the European Research Council (ERC Grant agreements 242658 [BIOCOM] and 647038 [BIODESERT]). M.D. is supported by an FPU fellowship from the Spanish Ministry of Education, Culture and Sports (FPU-15/00392). P.G.-P. is supported by a Ramón y Cajal grant from the Spanish Ministry of Science and Innovation (RYC2018-024766-I). S.A. acknowledges the Spanish MINECO for financial support via the DIGGING_DEEPER project through the 2015–2016 BiodivERsA3/FACCE-JPI joint call for research proposals. F.T.M. and S.A. acknowledge support from the Generalitat Valenciana (CIDEGENT/2018/041). C.C.-D. acknowledges support from the European Research Council (ERC Grant 647038 [BIODESERT])

The Response to Biologics is Better in Patients with Severe Asthma Than in Patients with Asthma–COPD Overlap Syndrome

Although biologics have demonstrated to be effective in T2-high asthma patients, there is little experience with these drugs in asthma-COPD overlap (ACO). The aim of this study was to compare the effectiveness of biologics in these two conditions. We included 318 patients (24 ACO and 297 asthma) treated with monoclonal antibodies and followed for at least 12 months Omalizumab was the most frequently employed biologic agent both in patients with ACO and asthma. Asthma control test (ACT) scores after at least 12 months of biologic therapy were not significantly different between groups. The percentage of patients with >= 1 exacerbation and >= 1 corticosteroid burst was significantly higher in ACO patients (70.8 vs 27.3 and 83.3% vs 37.5%, respectively), whereas the percentage of controlled patients (with no exacerbations, no need for corticosteroids and ACT >= 20) was significantly lower (16.7% vs 39.7%). In conclusion, this report suggests that patients with ACO treated with biologics reach worse outcomes than asthma patients

Functional rarity and evenness are key facets of biodiversity to boost multifunctionality

The functional traits of organisms within multispecies assemblages regulate biodiversity effects on ecosystem functioning. Yet how traits should assemble to boost multiple ecosystem functions simultaneously (multifunctionality) remains poorly explored. In a multibiome litter experiment covering most of the global variation in leaf trait spectra, we showed that three dimensions of functional diversity (dispersion, rarity, and evenness) explained up to 66% of variations in multifunctionality, although the dominant species and their traits remained an important predictor. While high dispersion impeded multifunctionality, increasing the evenness among functionally dissimilar species was a key dimension to promote higher multifunctionality and to reduce the abundance of plant pathogens. Because too-dissimilar species could have negative effects on ecosystems, our results highlight the need for not only diverse but also functionally even assemblages to promote multifunctionality. The effect of functionally rare species strongly shifted from positive to negative depending on their trait differences with the dominant species. Simultaneously managing the dispersion, evenness, and rarity in multispecies assemblages could be used to design assemblages aimed at maximizing multifunctionality independently of the biome, the identity of dominant species, or the range of trait values considered. Functional evenness and rarity offer promise to improve the management of terrestrial ecosystems and to limit plant disease risks.This work was funded by the British Ecological Society (SR17\1297 grant, PI: P.G.-P.) and by the European Research Council (ERC Grant Agreement #647038, BIODESERT, PI: F.T.M.). Y.L.B.-P. was supported by a Marie Sklodowska-Curie Actions Individual Fellowship within the European Program Horizon 2020 (DRYFUN Project #656035). H.S. was supported by a Juan de la Cierva-Formación grant from the Spanish Ministry of Economy and Competitiveness (FJCI-2015-26782). F.T.M. and S.A. were supported from the Generalitat Valenciana (CIDEGENT/2018/041). M.D. was supported by a Formación del Profesorado Universitario (FPU) fellowship from the Spanish Ministry of Education, Culture and Sports (FPU-15/00392). S.A. was supported by the Spanish MINECO for financial support via the DIGGING_DEEPER project through the 2015 to 2016 BiodivERsA3/FACCE‐JPI joint call for research proposals. B.K.S. research on biodiversity-ecosystem functions was supported by the Australian Research Council (DP170104634 and DP190103714). P.G.-P. was supported by a Ramón y Cajal grant from the Spanish Ministry of Science and Innovation (RYC2018-024766-I). R.M. was supported by MINECO (Grants CGL2014-56567-R and CGL2017-83855-R)

Differential Expression of Fungal Genes Determines the Lifestyle of Plectosphaerella Strains During Arabidopsis thaliana Colonization

16 Päg.The fungal genus Plectosphaerella comprises species and strains with different lifestyles on plants, such as P. cucumerina, which has served as model for the characterization of Arabidopsis thaliana basal and nonhost resistance to necrotrophic fungi. We have sequenced, annotated, and compared the genomes and transcriptomes of three Plectosphaerella strains with different lifestyles on A. thaliana, namely, PcBMM, a natural pathogen of wild-type plants (Col-0), Pc2127, a nonpathogenic strain on Col-0 but pathogenic on the immunocompromised cyp79B2 cyp79B3 mutant, and P0831, which was isolated from a natural population of A. thaliana and is shown here to be nonpathogenic and to grow epiphytically on Col-0 and cyp79B2 cyp79B3 plants. The genomes of these Plectosphaerella strains are very similar and do not differ in the number of genes with pathogenesis-related functions, with the exception of secreted carbohydrate-active enzymes (CAZymes), which are up to five times more abundant in the pathogenic strain PcBMM. Analysis of the fungal transcriptomes in inoculated Col-0 and cyp79B2 cyp79B3 plants at initial colonization stages confirm the key role of secreted CAZymes in the necrotrophic interaction, since PcBMM expresses more genes encoding secreted CAZymes than Pc2127 and P0831. We also show that P0831 epiphytic growth on A. thaliana involves the transcription of specific repertoires of fungal genes, which might be necessary for epiphytic growth adaptation. Overall, these results suggest that in-planta expression of specific sets of fungal genes at early stages of colonization determine the diverse lifestyles and pathogenicity of Plectosphaerella strains.This work was supported by the Spanish Ministry of Economy and Competitiveness (MINECO) grant BIO2015-64077-R and the Spanish Research Agency (AEI) grant RTI2018-096975-B-I00 to A. Molina and by the “Severo Ochoa Programme for Centers of Excellence in R&D” grant SEV-2016-0672 (2017-2021) to the CBGP (UPM-INIA). In the frame of SEV-2016-0672 program, H. Mélida was supported with a postdoctoral contract. A. Muñoz-Barrios was financially supported by the Universidad Politécnica de Madrid (UPM) Ph.D. students PIF program, I. del Hierro was a FPU fellow (Spanish Ministry of Education, Culture and Sports grant FPU16/07118), V. Fernández-Calleja was supported by the Consejería de Educacíon e Investigacíon of Comunidad de Madrid YEI program for postdoctoral researchers (PEJD-2016/BIO-3327), and the work was further supported through a Comunidad de Madrid YEI program for laboratory technicians grant (PEJ16/BIO/TL-1570).Peer reviewe