Association of insularity and body condition to cloacal bacteria prevalence in a small shorebird

Do islands harbour less diverse disease communities than mainland? The island biogeography theory predicts more diverse communities on mainland than on islands due to more niches, more diverse habitats and availability of greater range of hosts. We compared bacteria prevalences ofCampylobacter,ChlamydiaandSalmonellain cloacal samples of a small shorebird, the Kentish plover (Charadrius alexandrinus) between two island populations of Macaronesia and two mainland locations in the Iberian Peninsula. Bacteria were found in all populations but, contrary to the expectations, prevalences did not differ between islands and mainland. Females had higher prevalences than males forSalmonellaand when three bacteria genera were pooled together. Bacteria infection was unrelated to bird's body condition but females from mainland were heavier than males and birds from mainland were heavier than those from islands. Abiotic variables consistent throughout breeding sites, like high salinity that is known to inhibit bacteria growth, could explain the lack of differences in the bacteria prevalence between areas. We argue about the possible drivers and implications of sex differences in bacteria prevalence in Kentish plovers

The Hoopoe's Uropygial Gland Hosts a Bacterial Community Influenced by the Living Conditions of the Bird

Molecular methods have revealed that symbiotic systems involving bacteria are mostly based on whole bacterial communities. Bacterial diversity in hoopoe uropygial gland secretion is known to be mainly composed of certain strains of enterococci, but this conclusion is based solely on culture-dependent techniques. This study, by using culture-independent techniques (based on the 16S rDNA and the ribosomal intergenic spacer region) shows that the bacterial community in the uropygial gland secretion is more complex than previously thought and its composition is affected by the living conditions of the bird. Besides the known enterococci, the uropygial gland hosts other facultative anaerobic species and several obligated anaerobic species (mostly clostridia). The bacterial assemblage of this community was largely invariable among study individuals, although differences were detected between captive and wild female hoopoes, with some strains showing significantly higher prevalence in wild birds. These results alter previous views on the hoopoe-bacteria symbiosis and open a new window to further explore this system, delving into the possible sources of symbiotic bacteria (e.g. nest environments, digestive tract, winter quarters) or the possible functions of different bacterial groups in different contexts of parasitism or predation of their hoopoe host.This work was supported by the Ministerio de Ciencia y Tecnología (projects CGL2005-06975/BOSFEDER; CGL2007-61251/BOSFEDER), the Ministerio de Ciencia e Innovación (projects CGL2009-14006/BOSFEDER; CGL2010-19233-C03-01/BOSFEDER; CGL2010-19233-C03-03/BOSFEDER), the Ministerio de Economía y Competitividad (projects CGL2013-48193-C3-1-P/BOSFEDER; CGL2013-48193-C3-2-P/BOSFEDER), and the Junta de Andalucía (RNM 345, P09-RNM-4557). SMRR received a grant from the Ministerio de Ciencia e Innovación (FPI program, BES-2011-047677)

The Navy's Earth System Prediction Capability: A New Global Coupled Atmosphere-Ocean-Sea Ice Prediction System Designed for Daily to Subseasonal Forecasting

This paper describes the new global Navy Earth System Prediction Capability (Navy-ESPC) coupled atmosphere-ocean-sea ice prediction system developed at the Naval Research Laboratory (NRL) for operational forecasting for timescales of days to the subseasonal. Two configurations of the system are validated: (1) a low-resolution 16-member ensemble system and (2) a high-resolution deterministic system. The Navy-ESPC ensemble system became operational in August 2020, and this is the first time the NRL operational partner, Fleet Numerical Meteorology and Oceanography Center, will provide global coupled atmosphere-ocean-sea ice forecasts, with atmospheric forecasts extending past 16 days, and ocean and sea ice ensemble forecasts. A unique aspect of the Navy-ESPC is that the global ocean model is eddy resolving at 1/12° in the ensemble and at 1/25° in the deterministic configurations. The component models are current Navy operational systems: NAVy Global Environmental Model (NAVGEM) for the atmosphere, HYbrid Coordinate Ocean Model (HYCOM) for the ocean, and Community Ice CodE (CICE) for the sea ice. Physics updates to improve the simulation of equatorial phenomena, particularly the Madden-Julian Oscillation (MJO), were introduced into NAVGEM. The low-resolution ensemble configuration and high-resolution deterministic configuration are evaluated based on analyses and forecasts from January 2017 to January 2018. Navy-ESPC ensemble forecast skill for large-scale atmospheric phenomena, such as the MJO, North Atlantic Oscillation (NAO), Antarctic Oscillation (AAO), and other indices, is comparable to that of other numerical weather prediction (NWP) centers. Ensemble forecasts of ocean sea surface temperatures perform better than climatology in the tropics and midlatitudes out to 60 days. In addition, the Navy-ESPC Pan-Arctic and Pan-Antarctic sea ice extent predictions perform better than climatology out to about 45 days, although the skill is dependent on season