The development and sea trials of a subsea holographic camera for large volume in-situ recording of marine organisms

We describe the development, construction and sea testing of an underwater holographic camera (HoloCam) for in situ recording of marine organisms and particles in large volumes of sea water. HoloCam comprises a laser, power supply, holographic recording optics and plate holders, a water-tight housing and a support frame. Added to this are control electronics such that the entire camera is remotely operable and controllable from ship or dock-side. Uniquely the camera can simultaneously record both in-line and off-axis holograms using a pulsed frequency doubled Nd-YAG laser. In-line holography is capable of producing images of organisms with a resolution of better than 10 Pm (at concentrations up to a few thousand per cubic centimetre at the smallest sizes). Off-axis holograms of aquatic systems of up to 50,000 cm3 volume, have been recorded. Following initial laboratory testing, the holo-camera was evaluated in an observation tank and ultimately was tested in Loch Etive, Scotland. In-line and off-axis holograms were recorded to a depth of 100 m. We will present results on the test dives and evaluation of the camera performance

HoloCam: A subsea holographic camera for recording marine organisms and particles

The HoloCam system is a major component of a multi-national multi-discipline project known as HoloMar (funded by the European Commission under the MAST III initiative). The project is concerned with the development of pulsed laser holography to analyse and monitor the populations of living organisms and inanimate particles within the world's oceans. We describe here the development, construction and evaluation of a prototype underwater camera, the purpose of which is to record marine organisms and particles, in-situ. Recording using holography provides several advantages over conventional sampling methods in that it allows non-intrusive, non-destructive, high-resolution imaging of large volumes (up to 10^5 cm^3) in three dimensions. The camera incorporates both in-line and off-axis holographic techniques, which allows particles from a few micrometres to tens of centimetres to be captured. In tandem with development of the HoloCam, a dedicated holographic replay system and an automated data extraction and image processing facility are being developed. These will allow, optimisation of the images recorded by the camera, identification of species and particle concentration plotting

A holographic system for subsea recording and analysis of plankton and other marine particles

We report here details of the design, development, initial testing and field-deployment of the HOLOMAR system for in-situ subsea holography and analysis of marine plankton and nonliving particles. HOLOMAR comprises a submersible holographic camera ("HoloCam") able to record in-line and off-axis holograms at depths down to 100 m, together with specialised reconstruction hardware ("HoloScan") linked to custom image processing and classification software. The HoloCam consists of a laser and power supply, holographic recording optics and holographic plate holders, a water-tight housing and a support frame. It utilises two basic holographic geometries, in-line and off-axis such that a wide range of species, sizes and concentrations can be recorded. After holograms have been recorded and processed they are reconstructed in full three-dimensional detail in air in a dedicated replay facility. A computer-controlled microscope, using video cameras to record the image at a given depth, is used to digitise the scene. Specially written software extracts a binarised image of an object in its true focal plane and is classified using a neural network. The HoloCam was deployed on two separate cruises in a Scottish sea loch (Loch Etive) to a depth of 100 m and over 300 holograms were recorded

A comparison of the galaxy peculiar velocity field with the PSCz gravity field-- A Bayesian hyper-parameter method

We constructed a Bayesian hyper-parameter statistical method to quantify the difference between predicted velocities derived from the observed galaxy distribution in the \textit{IRAS}-PSC$z$ redshift survey and peculiar velocities measured using different distance indicators. In our analysis we find that the model--data comparison becomes unreliable beyond 70 \hmpc because of the inadequate sampling by \textit{IRAS} survey of prominent, distant superclusters, like the Shapley Concentration. On the other hand, the analysis of the velocity residuals show that the PSC$z$ gravity field provides an adequate model to the local, \le 70 \hmpc, peculiar velocity field. The hyper-parameter combination of ENEAR, SN, A1SN and SFI++ catalogues in the Bayesian framework constrains the amplitude of the linear flow to be $\beta=0.53 \pm 0.014$. For an rms density fluctuations in the PSC$z$ galaxy number density $\sigma_8^{\rm gal}=0.42\pm0.03$, we obtain an estimate of the growth rate of density fluctuations $f\sigma_{8}(z\sim0) = 0.42 \pm 0.033$, which is in excellent agreement with independent estimates based on different techniques.Comment: 14 pages, 32 figures, MNRAS in press, matched the MNRAS published versio

Detecting Sunyaev-Zel'dovich clusters with PLANCK: I. Construction of all-sky thermal and kinetic SZ-maps

All-sky thermal and kinetic Sunyaev-Zel'dovich (SZ) maps are presented for assessing how well the PLANCK-mission can find and characterise clusters of galaxies, especially in the presence of primary anisotropies of the cosmic microwave background (CMB) and various galactic and ecliptic foregrounds. The maps have been constructed from numerical simulations of structure formation in a standard LCDM cosmology and contain all clusters out to redshifts of z = 1.46 with masses exceeding 5e13 M_solar/h. By construction, the maps properly account for the evolution of cosmic structure, the halo-halo correlation function, the evolving mass function, halo substructure and adiabatic gas physics. The velocities in the kinetic map correspond to the actual density environment at the cluster positions. We characterise the SZ-cluster sample by measuring the distribution of angular sizes, the integrated thermal and kinetic Comptonisations, the source counts in the three relevant PLANCK-channels, and give the angular power-spectra of the SZ-sky. While our results are broadly consistent with simple estimates based on scaling relations and spherically symmetric cluster models, some significant differences are seen which may affect the number of cluster detectable by PLANCK.Comment: 14 pages, 16 figures, 3 tables, submitted to MNRAS, 05.Jul.200

Effects of beta-alanine supplementation on brain homocarnosine/carnosine signal and cognitive function: an exploratory study

Objectives: Two independent studies were conducted to examine the effects of 28 d of beta-alanine supplementation at 6.4 g d-1 on brain homocarnosine/carnosine signal in omnivores and vegetarians (Study 1) and on cognitive function before and after exercise in trained cyclists (Study 2). Methods: In Study 1, seven healthy vegetarians (3 women and 4 men) and seven age- and sex-matched omnivores undertook a brain 1H-MRS exam at baseline and after beta-alanine supplementation. In study 2, nineteen trained male cyclists completed four 20-Km cycling time trials (two pre supplementation and two post supplementation), with a battery of cognitive function tests (Stroop test, Sternberg paradigm, Rapid Visual Information Processing task) being performed before and after exercise on each occasion. Results: In Study 1, there were no within-group effects of beta-alanine supplementation on brain homocarnosine/carnosine signal in either vegetarians (p = 0.99) or omnivores (p = 0.27); nor was there any effect when data from both groups were pooled (p = 0.19). Similarly, there was no group by time interaction for brain homocarnosine/carnosine signal (p = 0.27). In study 2, exercise improved cognitive function across all tests (P0.05) of beta-alanine supplementation on response times or accuracy for the Stroop test, Sternberg paradigm or RVIP task at rest or after exercise. Conclusion: 28 d of beta-alanine supplementation at 6.4g d-1 appeared not to influence brain homocarnosine/ carnosine signal in either omnivores or vegetarians; nor did it influence cognitive function before or after exercise in trained cyclists

From Food to Offspring Down: Tissue-Specific Discrimination and Turn-Over of Stable Isotopes in Herbivorous Waterbirds and Other Avian Foraging Guilds

Isotopic discrimination and turn-over are fundamental to the application of stable isotope ecology in animals. However, detailed information for specific tissues and species are widely lacking, notably for herbivorous species. We provide details on tissue-specific carbon and nitrogen discrimination and turn-over times from food to blood, feathers, claws, egg tissues and offspring down feathers in four species of herbivorous waterbirds. Source-to-tissue discrimination factors for carbon (δ13C) and nitrogen stable isotope ratios (δ15N) showed little variation across species but varied between tissues. Apparent discrimination factors ranged between −0.5 to 2.5‰ for δ13C and 2.8 to 5.2‰ for δ15N, and were more similar between blood components than between keratinous tissues or egg tissue. Comparing these results with published data from other species we found no effect of foraging guild on discrimination factors for carbon but a significant foraging-guild effect for nitrogen discrimination factors

Simulation of non-Gaussian CMB maps

A simple method is presented for the rapid simulation of statistically-isotropic non-Gaussian maps of CMB temperature fluctuations with a given power spectrum and analytically-calculable bispectrum and higher-order polyspectra. The $n$th-order correlators of the pixel values may also be calculated analytically. The cumulants of the simulated map may be used to obtain an expression for the probability density function of the pixel temperatures. The statistical properties of the simulated map are determined by the univariate non-Gaussian distribution from which pixel values are drawn independently in the first stage of the simulation process. We illustrate the method using a non-Gaussian distribution derived from the wavefunctions of the harmonic oscillator. The basic simulation method is easily extended to produce non-Gaussian maps with a given power spectrum and diagonal bispectrum.Comment: 10 pages, 8 figures (3 coloured), replaced with version accepted by MNRAS. Figure 3 is not included but a complete version of the paper with high resolution figures can be downloaded from (http://www.mrao.cam.ac.uk/~graca/Ngsims/

Isotope Analysis Reveals Foraging Area Dichotomy for Atlantic Leatherback Turtles

Background: The leatherback turtle (Dermochelys coriacea) has undergone a dramatic decline over the last 25 years, and this is believed to be primarily the result of mortality associated with fisheries bycatch followed by egg and nesting female harvest. Atlantic leatherback turtles undertake long migrations across ocean basins from subtropical and tropical nesting beaches to productive frontal areas. Migration between two nesting seasons can last 2 or 3 years, a time period termed the remigration interval (RI). Recent satellite transmitter data revealed that Atlantic leatherbacks follow two major dispersion patterns after nesting season, through the North Gulf Stream area or more eastward across the North Equatorial Current. However, information on the whole RI is lacking, precluding the accurate identification of feeding areas where conservation measures may need to be applied. Methodology/Principal Findings: Using stable isotopes as dietary tracers we determined the characteristics of feeding grounds of leatherback females nesting in French Guiana. During migration, 3-year RI females differed from 2-year RI females in their isotope values, implying differences in their choice of feeding habitats (offshore vs. more coastal) and foraging latitude (North Atlantic vs. West African coasts, respectively). Egg-yolk and blood isotope values are correlated in nesting females, indicating that egg analysis is a useful tool for assessing isotope values in these turtles, including adults when not available. Conclusions/Significance: Our results complement previous data on turtle movements during the first year following the nesting season, integrating the diet consumed during the year before nesting. We suggest that the French Guiana leatherback population segregates into two distinct isotopic groupings, and highlight the urgent need to determine the feeding habitats of the turtle in the Atlantic in order to protect this species from incidental take by commercial fisheries. Our results also emphasize the use of eggs, a less-invasive sampling material than blood, to assess isotopic data and feeding habits for adult female leatherbacks