Interactions between natural and anthropogenic impacts on the genetic diversity and population genetic structure of European beech forests

The accurate assessment of forest persistence under environmental change is dependent on the fundamental understanding of the genetic consequences of human intervention and its comparison to that of natural processes, as declines in genetic diversity and changes in its structuring can compromise the adaptive ability of a population. The European beech, Fagus sylvatica, has experienced prolonged human impact over its 14 million ha range with contemporary forests harbouring high ecological, economic, and cultural value. Historical traditional management practices, such as coppicing and pollarding, have impacted a large portion of Europe’s forests. This form of management encouraged vegetative regeneration, prolonging the longevity of individual trees. In several cases, the structure and function of managed trees and their associated ecosystems were significantly altered. Specifically, coppiced beech forests in Europe displayed significantly larger extents of spatial genetic structuring compared to their natural counterparts, revealing a change in the genetic composition of the population due to decades of management. Humans have also aided in the dispersal of beech within and outside of its natural range. In Great Britain, the putative native range retained signals of past colonisation dynamics. However, these signals were obscured by the wide-spread translocation of the species throughout the country. Evidence of post-glacial colonisation dynamics can be found in Sweden as well. In contrast to Britain, the structure of this natural leading range edge displays a gradual reduction in population size where isolation was found to have acted as an effective barrier to gene flow reducing the genetic diversity of populations

Coppice management of forests impacts spatial genetic structure but not genetic diversity in European beech (Fagus sylvatica L.)

Coppice management of forests was historically common in Europe. Actively managed coppice persists through vegetative regeneration prolonging the lifespan of trees and reducing flowering, seed production, and establishment. As coppicing alters the primary regeneration pathway within a stand, it is expected to alter the level and structuring of genetic diversity within populations. The study species, European beech (Fagus sylvatica L.), has historically experienced widespread coppicing throughout the range of the species. Genetic material was obtained from paired coppiced and high forest stands, in each of three study sites across Europe located in Germany, France, and Italy. Trees were genotyped at 11 microsatellite loci. Estimates of genetic diversity were found to be equally high as those found in natural forests. Significant spatial genetic structure of coppice stands extended 10-20m further than their paired high forest indicating that local-scale patterns of geneflow have been significantly altered by generations of forest management in the coppice stands. Understanding the implications of such changes for the structure and level of diversity within traditionally managed populations can assist with management planning for conservation and resource use into the future

Understanding the legacy of widespread population translocations on the post-glacial genetic 2 structure of the European beech, Fagus sylvatica L.

Aim  Human impacts have shaped species ranges throughout the Holocene. The putative native range of beech, Fagus sylvatica, in Britain was obscured by its late post-glacial arrival and subsequent extensive management. We sought to differentiate the interacting effects of post-glacial colonization and anthropic impacts on the current genetic structure and diversity of beech by contrasting phylogeographic signals from putatively natural and translocated populations.  Location  Samples were obtained from 42 sites throughout Great Britain.  Methods  Chloroplast and nuclear microsatellite marker data were interpreted alongside palynological, historical and anecdotal evidence. Genetic structure was analysed using individual-based Bayesian assignment methods and colonization history was analysed using an approximate Bayesian computation framework.  Results  Phylogeographic patterns suggested contemporary forests originated from putative native south-eastern populations. High haplotypic diversity was found near the entry point of beech into Britain. Cryptic signals of isolation-by-distance persisted in the putative native range, together with higher levels of gene diversity in nuclear markers. Weak regional nuclear genetic structure suggested high levels of contemporary gene flow throughout the country.  Main conclusions  Genetic patterns driven by natural colonization persist despite widespread anthropic intervention. Forests in northerly regions were established from forests in the putative native range, diminishing the credibility of any present boundary between the native and non-native range of beech in Britain

Veterinary syndromic surveillance using swine production data for farm health management and early disease detection

Research Areas: Veterinary SciencesThe use of syndromic surveillance (SyS) has grown in animal health since the 2010s, but the use of production data has been underexplored due to methodological and practical challenges. This paper aimed to tackle some of those challenges by developing a SyS system using production data routinely collected in pig breeding farms. Health-related indicators were created from the recorded data, and two different time-series types emerged: the weekly counts of events traditionally used in SyS; and continuous time-series, where every new event is a new observation, and grouping by time-unit is not applied. Exponentially Weighted Moving Average (EWMA) and Shewhart control charts were used for temporal aberration detection, using three detection limits to create a “severity” score. The system performance was evaluated using simulated outbreaks of porcine respiratory and reproduction syndrome (PRRS) as a disease introduction scenario. The system proved capable of providing early detection of unexpected trends, serving as a useful health and management decision support tool for farmers. Further research is needed to combine results of monitoring multiple parallel time-series into an overall assessment of the risk of reproduction failure.info:eu-repo/semantics/publishedVersio

Intestinal fructose and glucose metabolism in health and disease

The worldwide epidemics of obesity and diabetes have been linked to increased sugar consumption in humans. Here, we review fructose and glucose metabolism, as well as potential molecular mechanisms by which excessive sugar consumption is associated to metabolic diseases and insulin resistance in humans. To this end, we focus on understanding molecular and cellular mechanisms of fructose and glucose transport and sensing in the intestine, the intracellular signaling effects of dietary sugar metabolism, and its impact on glucose homeostasis in health and disease. Finally, the peripheral and central effects of dietary sugars on the gut–brain axis will be reviewed.Spanish MINISTERIO DE ECONOMÍA, INDUSTRIA Y COMPETITIVIDAD, grant numbers SAF2016-77871-C2-1-R and SAF2016-77871-C2-2-R to I.C-C. and G.P. respectively; the EFSD European Research Programme on New Targets for Type 2 Diabetes supported by an educational research grant from MSD to I.C-C. and G.P.; the FUNDACIÓN LA-CAIXA Y FUNDACIÓN CAJA DE BURGOS, grant number CAIXA-UBU001 to G.P

Performance of chemically modified reduced graphene oxide (CMrGO) in electrodynamic dust shield (EDS) applications

Electrodynamic Dust Shield (EDS) technology is a dust mitigation strategy that is commonly studied for applications such as photovoltaics or thermal radiators where soiling of the surfaces can reduce performance. The goal of the current work was to test the performance of a patterned nanocomposite EDS system produced through spray-coating and melt infiltration of chemically modified reduced graphene oxide (CMrGO) traces with thermoplastic high-density polyethylene (HDPE). The EDS performance was tested for a dusting of lunar regolith simulant under high vacuum conditions (~10-6 Torr) using both 2-phase and 3-phase configurations. Uncapped (bare) devices showed efficient dust removal at moderate voltages (1000 V) for both 2-phase and 3-phase designs, but the performance of the devices degraded after several sequential tests due to erosion of the traces caused by electric discharges. Further tests carried out while illuminating the dust surface with a UV excimer lamp showed that the EDS voltage needed to reach the maximum cleanliness was reduced by almost 50% for the 2-phase devices (500 V minimum for rough and 1000 V for smooth), while the 3-phase devices were unaffected by the application of UV. Capping the CMrGO traces with low-density polyethylene (LDPE) eliminated breakdown of the materials and device degradation, but larger voltages (3000 V) coupled with UV illumination were required to remove the grains from the capped devices.Comment: 22 pages, 7 figure

A diagnostic real-time PCR assay for the rapid identification of the tomato-potato psyllid, Bactericera cockerelli (Sulc, 1909) and development of a psyllid barcoding database

The accurate and rapid identification of insect pests is an important step in the prevention and control of outbreaks in areas that are otherwise pest free. The potato-tomato psyllid Bactericera cockerelli (Sulc, 1909) is the main vector of 'Candidatus Liberibacter solanacearum' on potato and tomato crops in North America and New Zealand; and is considered a threat for introduction in Europe and other pest-free regions. This study describes the design and validation of the first species-specific TaqMan probe-based real-time PCR assay, targeting the ITS2 gene region of B. cockerelli. The assay detected B. cockerelli genomic DNA from adults, immatures, and eggs, with 100% accuracy. This assay also detected DNA from cloned plasmids containing the ITS2 region of B. cockerelli with 100% accuracy. The assay showed 0% false positives when tested on genomic and cloned DNA from 73 other psyllid species collected from across Europe, New Zealand, Mexico and the USA. This included 8 other species in the Bactericera genus and the main vectors of 'Candidatus Liberibacter solanacearum' worldwide. The limit of detection for this assay at optimum conditions was 0.000001ng DNA (similar to 200 copies) of ITS2 DNA which equates to around a 1:10000 dilution of DNA from one single adult specimen. This assay is the first real-time PCR based method for accurate, robust, sensitive and specific identification of B. cockerelli from all life stages. It can be used as a surveillance and monitoring tool to further study this important crop pest and to aid the prevention of outbreaks, or to prevent their spread after establishment in new areas

Obesity, starch digestion and amylase: association between copy number variants at human salivary (AMY1) and pancreatic (AMY2) amylase genes

The human salivary amylase genes display extensive copy number variation (CNV), and recent work has implicated this variation in adaptation to starch-rich diets, and in association with body mass index. In this work, we use paralogue ratio tests, microsatellite analysis, read depth and fibre-FISH to demonstrate that human amylase CNV is not a smooth continuum, but is instead partitioned into distinct haplotype classes. There is a fundamental structural distinction between haplotypes containing odd or even numbers of AMY1 gene units, in turn coupled to CNV in pancreatic amylase genes AMY2A and AMY2B. Most haplotypes have one copy each of AMY2A and AMY2B and contain an odd number of copies of AMY1; consequently, most individuals have an even total number of AMY1. In contrast, haplotypes carrying an even number of AMY1 genes have rearrangements leading to CNVs ofAMY2A/AMY2B. Read-depth and experimental data showthat different populations harbour different proportions of these basic haplotype classes. In Europeans, the copy numbers of AMY1 and AMY2A are correlated, so that phenotypic associations caused by variation in pancreatic amylase copy number could be detected indirectly as weak association with AMY1 copy number.We showthat the quantitative polymerase chain reaction (qPCR) assay previously applied to the high-throughput measurement of AMY1 copy number is less accurate than the measures we use and that qPCR data in other studies have been further compromised by systematic miscalibration. Our results uncover new patterns in human amylase variation and imply a potential role for AMY2 CNV in functional associations